RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] (123 letters) >1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Length = 98 Score = 25.7 bits (56), Expect = 2.3 Identities = 4/44 (9%), Positives = 13/44 (29%) Query: 59 DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGED 102 S + + K+ + +L + + + Y + Sbjct: 2 SSGSSGEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS 45 >1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:1-66,A:321-496) Length = 242 Score = 24.3 bits (52), Expect = 5.9 Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 48 CNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIY 107 V + S I D D+++ L L Q S++++ W+ + E +Y Sbjct: 155 IRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVY 214 Query: 108 EHPDQEHRE 116 D + R+ Sbjct: 215 GVGDGKLRD 223 >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* (A:639-666,A:743-822) Length = 108 Score = 24.4 bits (53), Expect = 6.0 Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 3/36 (8%) Query: 64 DKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLD 99 L+ ++ +K + L K+ + E+ +E+ Sbjct: 50 RYLEEVEHVKEAVQLRSYGQKD---PIVEFKKETYY 82 >2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} (A:226-282,A:344-540) Length = 254 Score = 24.1 bits (52), Expect = 7.4 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 59 DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEI 106 D+ ILD + + + Q A+ L L + +++ D + Sbjct: 204 DTKILDPRNTYASPEQW----QEKAETLAKLFIDNFDKYTDTPAGAAL 247 >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 89 Score = 23.7 bits (51), Expect = 8.9 Identities = 6/45 (13%), Positives = 10/45 (22%) Query: 63 LDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIY 107 + + LQ L EY G + + Sbjct: 6 SGPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 50 >1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} (A:199-240,A:326-524) Length = 241 Score = 23.6 bits (51), Expect = 9.4 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 59 DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEI 106 +L+ A D++ + T+K L ++ +E + + +E+ Sbjct: 185 PEHLLNPRKAWKDVRQF----NETSKELVAMFQESFSARFAAKASQEM 228 >2ekg_A Proline dehydrogenase/delta-1-pyrroline-5- carboxylate dehydrogenase; flavoenzyme, prodh, beta-alpha- barrel, suicide inhibitor; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A* (A:1-51,A:303-327) Length = 76 Score = 23.5 bits (50), Expect = 9.8 Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 6 NHFHDEINENFYFHSHPNAD 25 +H H +EN YF H N D Sbjct: 5 HHHHHHASENLYFQGHMNLD 24 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.313 0.132 0.377 Gapped Lambda K H 0.267 0.0601 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,020,578 Number of extensions: 40994 Number of successful extensions: 135 Number of sequences better than 10.0: 1 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 42 Length of query: 123 Length of database: 4,956,049 Length adjustment: 73 Effective length of query: 50 Effective length of database: 2,488,284 Effective search space: 124414200 Effective search space used: 124414200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.3 bits)