RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780122|ref|YP_003064535.1| hypothetical protein
CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)



>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA,
           national project on protein structural and functional
           analyses; NMR {Homo sapiens} (A:)
          Length = 98

 Score = 25.7 bits (56), Expect = 2.3
 Identities = 4/44 (9%), Positives = 13/44 (29%)

Query: 59  DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGED 102
            S    +     + K+ + +L    + +  +   Y     +   
Sbjct: 2   SSGSSGEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPS 45


>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium
           cruentum} (A:1-66,A:321-496)
          Length = 242

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 48  CNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIY 107
              V    +   S I D  D+++ L     L Q       S++++ W+   + E    +Y
Sbjct: 155 IRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVY 214

Query: 108 EHPDQEHRE 116
              D + R+
Sbjct: 215 GVGDGKLRD 223


>3jux_A Protein translocase subunit SECA; protein translocation,
          ATPase, conformational change, peptide binding,
          ATP-binding, cell inner membrane; HET: ADP; 3.10A
          {Thermotoga maritima} PDB: 3din_A*
          (A:639-666,A:743-822)
          Length = 108

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 64 DKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLD 99
            L+ ++ +K  + L     K+    + E+ +E+  
Sbjct: 50 RYLEEVEHVKEAVQLRSYGQKD---PIVEFKKETYY 82


>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase;
           HET: ATP; 1.60A {Escherichia coli K12}
           (A:226-282,A:344-540)
          Length = 254

 Score = 24.1 bits (52), Expect = 7.4
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 59  DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEI 106
           D+ ILD  +     + +    Q  A+ L  L  + +++  D      +
Sbjct: 204 DTKILDPRNTYASPEQW----QEKAETLAKLFIDNFDKYTDTPAGAAL 247


>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding
           domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR
           {Homo sapiens} (A:)
          Length = 89

 Score = 23.7 bits (51), Expect = 8.9
 Identities = 6/45 (13%), Positives = 10/45 (22%)

Query: 63  LDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIY 107
              +         +  LQ         L EY      G    + +
Sbjct: 6   SGPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEF 50


>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop,
           lyase; 2.00A {Trypanosoma cruzi} (A:199-240,A:326-524)
          Length = 241

 Score = 23.6 bits (51), Expect = 9.4
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 59  DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEI 106
              +L+   A  D++ +      T+K L ++ +E +      +  +E+
Sbjct: 185 PEHLLNPRKAWKDVRQF----NETSKELVAMFQESFSARFAAKASQEM 228


>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5- carboxylate
          dehydrogenase; flavoenzyme, prodh, beta-alpha- barrel,
          suicide inhibitor; HET: LYX FAD; 1.90A {Thermus
          thermophilus} PDB: 2g37_A* (A:1-51,A:303-327)
          Length = 76

 Score = 23.5 bits (50), Expect = 9.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 6  NHFHDEINENFYFHSHPNAD 25
          +H H   +EN YF  H N D
Sbjct: 5  HHHHHHASENLYFQGHMNLD 24


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.313    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,020,578
Number of extensions: 40994
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 42
Length of query: 123
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 50
Effective length of database: 2,488,284
Effective search space: 124414200
Effective search space used: 124414200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)