BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
(107 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039800|gb|ACT56596.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120694|gb|ADV02517.1| hypothetical protein SC1_gp190 [Liberibacter phage SC1]
gi|317120737|gb|ADV02559.1| hypothetical protein SC2_gp190 [Liberibacter phage SC2]
gi|317120798|gb|ADV02619.1| hypothetical protein SC2_gp190 [Liberibacter phage SC2]
gi|317120838|gb|ADV02659.1| hypothetical protein SC1_gp190 [Liberibacter phage SC1]
Length = 107
Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60
MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM
Sbjct: 1 MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60
Query: 61 KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107
KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA
Sbjct: 61 KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107
>gi|315121962|ref|YP_004062451.1| hypothetical protein CKC_01060 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122930|ref|YP_004063419.1| hypothetical protein CKC_05930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495364|gb|ADR51963.1| hypothetical protein CKC_01060 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496332|gb|ADR52931.1| hypothetical protein CKC_05930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 72
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 1 MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAV---DPDLKKRVTVLAI 57
MSV I+EA++AKD+ +L FL+LIT GL+E + + A DPDLK RVTVLA+
Sbjct: 1 MSVQAIKEAIRAKDVAKLCEFLALITNGLKEITHSSKPQTTTAPLQGDPDLKHRVTVLAL 60
Query: 58 SY---MKRCGD 65
S +RCG+
Sbjct: 61 SLHEEARRCGE 71
>gi|219536309|gb|ACL18060.1| STK [Triticum monococcum]
Length = 476
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 54 VLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVD----CTDEDFRLV 97
V+AI + R G++G +FL E+L+ +L H+ V+ C DE+ RL+
Sbjct: 128 VVAIKQLNRDGNQGNKEFLVEVLMLSLLHHQNLVNLVGYCADEEQRLL 175
>gi|297852920|ref|XP_002894341.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297340183|gb|EFH70600.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 9 AVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEA--VDPDLKKRVTVLAISYMKRC 63
+VK KDIP++LT L+ Q + +T ++ + V+ ++KK++++ ++S +C
Sbjct: 113 SVKCKDIPEMLTLSELVGQRYGQRYVTTAIQVLPGNLVNTEIKKKLSIYSVSEHVKC 169
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039800|gb|ACT56596.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120694|gb|ADV02517.1| hypothetical protein SC1_gp190 [Liberibacter phage SC1]
gi|317120737|gb|ADV02559.1| hypothetical protein SC2_gp190 [Liberibacter phage SC2]
gi|317120798|gb|ADV02619.1| hypothetical protein SC2_gp190 [Liberibacter phage SC2]
gi|317120838|gb|ADV02659.1| hypothetical protein SC1_gp190 [Liberibacter phage SC1]
Length = 107
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60
MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM
Sbjct: 1 MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60
Query: 61 KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107
KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA
Sbjct: 61 KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107
>gi|315121962|ref|YP_004062451.1| hypothetical protein CKC_01060 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122930|ref|YP_004063419.1| hypothetical protein CKC_05930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495364|gb|ADR51963.1| hypothetical protein CKC_01060 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496332|gb|ADR52931.1| hypothetical protein CKC_05930 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 72
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 1 MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAV---DPDLKKRVTVLAI 57
MSV I+EA++AKD+ +L FL+LIT GL+E + + A DPDLK RVTVLA+
Sbjct: 1 MSVQAIKEAIRAKDVAKLCEFLALITNGLKEITHSSKPQTTTAPLQGDPDLKHRVTVLAL 60
Query: 58 SY---MKRCGD 65
S +RCG+
Sbjct: 61 SLHEEARRCGE 71
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.319 0.138 0.372
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,684,891,235
Number of Sequences: 13984884
Number of extensions: 55502730
Number of successful extensions: 132335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 132329
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 4,792,584,752
effective HSP length: 75
effective length of query: 32
effective length of database: 3,743,718,452
effective search space: 119798990464
effective search space used: 119798990464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.8 bits)