BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039800|gb|ACT56596.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120694|gb|ADV02517.1| hypothetical protein SC1_gp190 [Liberibacter phage SC1]
 gi|317120737|gb|ADV02559.1| hypothetical protein SC2_gp190 [Liberibacter phage SC2]
 gi|317120798|gb|ADV02619.1| hypothetical protein SC2_gp190 [Liberibacter phage SC2]
 gi|317120838|gb|ADV02659.1| hypothetical protein SC1_gp190 [Liberibacter phage SC1]
          Length = 107

 Score =  205 bits (521), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60
           MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM
Sbjct: 1   MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60

Query: 61  KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107
           KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA
Sbjct: 61  KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107


>gi|315121962|ref|YP_004062451.1| hypothetical protein CKC_01060 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|315122930|ref|YP_004063419.1| hypothetical protein CKC_05930 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495364|gb|ADR51963.1| hypothetical protein CKC_01060 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496332|gb|ADR52931.1| hypothetical protein CKC_05930 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 72

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 6/71 (8%)

Query: 1  MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAV---DPDLKKRVTVLAI 57
          MSV  I+EA++AKD+ +L  FL+LIT GL+E   +   +   A    DPDLK RVTVLA+
Sbjct: 1  MSVQAIKEAIRAKDVAKLCEFLALITNGLKEITHSSKPQTTTAPLQGDPDLKHRVTVLAL 60

Query: 58 SY---MKRCGD 65
          S     +RCG+
Sbjct: 61 SLHEEARRCGE 71


>gi|297852920|ref|XP_002894341.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297340183|gb|EFH70600.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 5   FIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEA--VDPDLKKRVTVLAISYMKR 62
            I  +VK KDIP++LT   L+ Q   +  +T  ++ +    V+ ++KK++++ ++S   +
Sbjct: 109 LIYASVKCKDIPEMLTLSELVGQRYGQRYVTTAIQVLPGNLVNTEIKKKLSIYSVSEHVK 168

Query: 63  C 63
           C
Sbjct: 169 C 169


>gi|219536309|gb|ACL18060.1| STK [Triticum monococcum]
          Length = 476

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 54  VLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVD----CTDEDFRLV 97
           V+AI  + R G++G  +FL E+L+ +L  H+  V+    C DE+ RL+
Sbjct: 128 VVAIKQLNRDGNQGNKEFLVEVLMLSLLHHQNLVNLVGYCADEEQRLL 175


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.319    0.135    0.368 

Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,065,601,050
Number of Sequences: 13984884
Number of extensions: 41003926
Number of successful extensions: 79757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 79753
Number of HSP's gapped (non-prelim): 5
length of query: 107
length of database: 4,792,584,752
effective HSP length: 75
effective length of query: 32
effective length of database: 3,743,718,452
effective search space: 119798990464
effective search space used: 119798990464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.8 bits)