RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>gnl|CDD|163713 cd08157, catalase_fungal, Fungal catalases similar to yeast
           catalases A and T.  Catalase is a ubiquitous enzyme
           found in both prokaryotes and eukaryotes, which is
           involved in the protection of cells from the toxic
           effects of peroxides. It catalyzes the conversion of
           hydrogen peroxide to water and molecular oxygen.
           Catalases also utilize hydrogen peroxide to oxidize
           various substrates such as alcohol or phenols. This
           family of fungal catalases has a relatively small
           subunit size, and binds a protoheme IX (heme b) group
           buried deep inside the structure. Fungal catalases also
           bind NADPH as a second redox-active cofactor. They form
           tetramers; in eukaryotic cells, catalases are typically
           located in peroxisomes. Saccharomyces cerevisiae
           catalase T is found in the cytoplasm, though.
          Length = 451

 Score = 26.9 bits (60), Expect = 1.4
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 24  LITQGLQEALITQDVKAVEAVDPDLKKRVT 53
           +   G QE  +      +    P+++KRV 
Sbjct: 403 VGKPGQQERFVKNVAGHLSGAPPEIRKRVY 432


>gnl|CDD|80319 cd04436, DEP_fRgd2, DEP (Dishevelled, Egl-10, and Pleckstrin)
          domain found in fungal RhoGAP (GTPase-activator
          protein) Rgd2-like proteins. Rgd2-like proteins share a
          common domain architecture, containing, beside the
          RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology)
          domain. Yeast Rgd2 is a GAP protein for Cdc42 and
          Rho5..
          Length = 84

 Score = 24.4 bits (53), Expect = 6.7
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 23 SLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKGKS 69
          S I   LQE +  +D+ A EA   DL      L   +++  G  G +
Sbjct: 33 SEIVSWLQENMPEKDLDAAEAFGQDL------LNQGFLRLVGGVGST 73


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,170,707
Number of extensions: 50835
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 8
Length of query: 107
Length of database: 6,263,737
Length adjustment: 74
Effective length of query: 33
Effective length of database: 4,664,671
Effective search space: 153934143
Effective search space used: 153934143
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)