RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation,
           ATP-binding, heat shock,; 2.3A {Homo sapiens} SCOP:
           a.205.1.1 PDB: 2k5b_B 2w0g_A
          Length = 265

 Score = 30.6 bits (69), Expect = 0.097
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 7   EEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDK 66
           ++ +    +  +  + SL  + LQ+    +DV+ ++     +       A  +M+RC D 
Sbjct: 171 KKRLGPGGLDPVEVYESL-PEELQKCFDVKDVQMLQDAISKMDPTD---AKYHMQRCIDS 226

Query: 67  G 67
           G
Sbjct: 227 G 227


>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU;
           2.64A {Bacteroides thetaiotaomicron}
          Length = 325

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 4/32 (12%), Positives = 10/32 (31%)

Query: 14  DIPQLLTFLSLITQGLQEALITQDVKAVEAVD 45
            +P     L L+   + +A         + + 
Sbjct: 223 ALPGKGNGLELVLDSVLDATFIYPTNGDKVLQ 254


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 860,572
Number of extensions: 34638
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 6
Length of query: 107
Length of database: 5,693,230
Length adjustment: 71
Effective length of query: 36
Effective length of database: 3,971,906
Effective search space: 142988616
Effective search space used: 142988616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)