HHsearch alignment for GI: 254780124 and conserved domain: COG2887
>COG2887 RecB family exonuclease [DNA replication, recombination, and repair].
Probab=99.58 E-value=1.4e-13 Score=108.67 Aligned_cols=225 Identities=19% Similarity=0.156 Sum_probs=115.2
Q ss_pred CCCCCHHHHHCCCHHHHHHC--CCCCC-----CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------CCCCCCCH
Q ss_conf 18423677871832388621--38999-----89889998999999999972457653432201--------04564537
Q gi|254780124|r 7 LSASSSHRWLKCPIAPTLES--KIPQT-----TSIYASEGTFAHNLLAHCLEQGVDAETVSHQK--------LTFENDTR 71 (388)
Q Consensus 7 LSpSs~~rwl~CP~s~~Le~--~~pd~-----~S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~--------~~~~~~~~ 71 (388)
T Consensus 1 ls~s~~~~l~r~p~~~~a~~i~~l~~~~~~~e~~~~~~~g~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (269)
T COG2887 1 LSVSRAEALRRCPYLFYARRILALPPLGTRAEEPEAAVRGTLLHAILEALVGE-RYHAAAAALAKLAWLLRKELAEAELP 79 (269)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96535756255851699998635377875100244243354799999988631-24432031677765555544310233
Q ss_pred H-----HHHHHHHHHHHHH--HHHHCCCCCCE-EEEEEE-EEEECCC-EEEEEEEEEEEEE-CCEEEEEEEECCCCCC--
Q ss_conf 7-----5788999999999--99850378736-887755-3200044-0589999999985-9979999811368876--
Q gi|254780124|r 72 I-----VDTEMASSVSMVL--AYVRTFSGPFL-SETEVP-LEPFTTE-PGATGTADILIFN-STQWIIVDFKYGAGVP-- 138 (388)
Q Consensus 72 ~-----~~~e~~~~v~~~~--~~~r~~~~~~~-ve~E~~-~~~~~~~-~~~~GtiD~I~~~-dg~l~IiDyKtGk~~~-- 138 (388)
T Consensus 80 ~~~~~~~~~r~~~~~~~~~~~~~e~~r~~~~~~~~~e~~~~~~~i~~~i~l~G~aDRid~~~~g~i~ilDYKTG~~p~~a 159 (269)
T COG2887 80 GYTDAEWLDRLRARARAFLVYDWERERGTAFHAWLEEERGAELLIDGGIRLRGRADRIDKDADGELEILDYKTGKSPSAA 159 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEECCCCEECCEEEECCCCCCCCEEEEEEECCCCCCHH
T ss_conf 34662034889986654534568761677333665552230467303402211430002478884689986348886243
Q ss_pred -CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -7446687999999999984383567651389999983048877543025898899999999999999998577653047
Q gi|254780124|r 139 -VKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVS 217 (388)
Q Consensus 139 -v~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~ 217 (388)
T Consensus 160 ~~~~~~~~ql~~~~~~l~~~~~~~~---~p~~l~~v~~~--~~~~~~~~~~~~~~~~-----~~~~~~e~~~~l~~~~~~ 229 (269)
T COG2887 160 RAPAAVSPQLALEALALIEGRFRGV---EPGQLRLVYLR--KSGRVGEAPDNREQLP-----QLALAREALAELAELLAG 229 (269)
T ss_pred HCHHCCCHHHHHHHHHHHHCCCCCC---CCCCEEEEEEC--CCCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHCCC
T ss_conf 3211105346888998871455666---78872488865--7776677850666540-----057799999999875345
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 766-7888666672576445620134
Q gi|254780124|r 218 LEH-YGVNDDSCRFCRAKVRCPALSR 242 (388)
Q Consensus 218 ~~~-~~~~g~~CrfC~~k~~Cra~a~ 242 (388)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (269)
T COG2887 230 LEVRPRGYSSRCDLCPHQDLCPAYGG 255 (269)
T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf 54344562100244444455776444