HHsearch alignment for GI: 254780124 and conserved domain: COG4343
>COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms].
Probab=97.13 E-value=0.012 Score=36.83 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=95.6
Q ss_pred HHCCCHH--HHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCC--CCCCC---HHHHHHHHHHH
Q ss_conf 8718323--8862--1389998988999899999999997245----765343220104--56453---77578899999
Q gi|254780124|r 15 WLKCPIA--PTLE--SKIPQTTSIYASEGTFAHNLLAHCLEQG----VDAETVSHQKLT--FENDT---RIVDTEMASSV 81 (388)
Q Consensus 15 wl~CP~s--~~Le--~~~pd~~S~aA~~GT~~H~llE~~l~~~----l~~~~~~~~~~~--~~~~~---~~~~~e~~~~v 81 (388)
T Consensus 51 y~yCpt~RdvYLk~Vlg~Rge~~~~l~lG~aIHea~~~~~~e~k~~~~sg~sp~~sv~~d~~~~~~~~~k~v~~~~~~~~ 130 (281)
T COG4343 51 YGYCPTGRDVYLKRVLGVRGEGGFPLLLGAAIHEAFAKAIEEHKSLIYSGESPRESVLEDAREMANILAKRVWARLNEYC 130 (281)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26788740668999862034677430367899999999999999875045683312067899987789888889887788
Q ss_pred HH-HHHHH-----HCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEE--CCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99-99998-----5037873688775532000440589999999985--9979999811368876744668799999999
Q gi|254780124|r 82 SM-VLAYV-----RTFSGPFLSETEVPLEPFTTEPGATGTADILIFN--STQWIIVDFKYGAGVPVKAENNTQLMLYACG 153 (388)
Q Consensus 82 ~~-~~~~~-----r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~--dg~l~IiDyKtGk~~~v~a~~n~QL~lYALg 153 (388)
T Consensus 131 ~~~y~~~~~e~~~~tsds~~~~~~Pv~vE~~vDGsp-LGlS~lv~~D~~~~l~vv~elKvG~~---~e~hrLalAGYAlA 206 (281)
T COG4343 131 EISYMAVRSEKASRTSDSALSIGAPVLVEFNVDGSP-LGLSDLVRVDALVGLPVVVELKVGSY---REVHRLALAGYALA 206 (281)
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCC-CCCCCEECCHHHCCCCEEEEEECCCH---HHHHHHHHHHHHHH
T ss_conf 999999998765422441013125358981478974-55533223001036765999941652---68999887446765
Q ss_pred HHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCC
Q ss_conf 99843835676513899999830488775430258-9889999999999999999857765304776678886666-725
Q gi|254780124|r 154 ALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVI-SADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSC-RFC 231 (388)
Q Consensus 154 A~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~-s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~~~~g~~C-rfC 231 (388)
T Consensus 207 iEa~~eiPVD~G-----~li~vtvN~~vk~~~~l~~i~d~lRseFLe~RD~~~div~-------~g~DPG~a-~~C~~~C 273 (281)
T COG4343 207 IEADTEIPVDYG-----VLISVTVNSGVKIKARLVYIDDSLRSEFLEERDRVADIVE-------YGSDPGLA-KSCPSGC 273 (281)
T ss_pred HHHHHCCCCCEE-----EEEEEEECCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH-------CCCCCCCC-CCCCCCC
T ss_conf 324105873235-----7999997686068889997383788999987788999997-------38898999-8899998
Q ss_pred CCCCCCC
Q ss_conf 7644562
Q gi|254780124|r 232 RAKVRCP 238 (388)
Q Consensus 232 ~~k~~Cr 238 (388)
T Consensus 274 ~F~~~Ch 280 (281)
T COG4343 274 PFYEVCH 280 (281)
T ss_pred CHHHHCC
T ss_conf 4587518