>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..

Probab=99.39 E-value=1.1e-11 Score=96.31 Aligned_cols=166 Identities=21% Similarity=0.232 Sum_probs=92.2 Q ss_pred CCCCCCHHHHHCCC--HHHH----HHCCCCCC--C-CHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCC-CCC-HHH Q ss_conf 61842367787183--2388----62138999--8-98899989999999999724576534-322010456-453-775 Q gi|254780124|r 6 FLSASSSHRWLKCP--IAPT----LESKIPQT--T-SIYASEGTFAHNLLAHCLEQGVDAET-VSHQKLTFE-NDT-RIV 73 (388) Q Consensus 6 ~LSpSs~~rwl~CP--~s~~----Le~~~pd~--~-S~aA~~GT~~H~llE~~l~~~l~~~~-~~~~~~~~~-~~~-~~~ 73 (388) T Consensus 993 pl~PS~~~~~i~~~~~~~~~~~~llSPvl~e~~~~~~~A~~RG~~lH~LLQ~LP~~~~~~R~~aA~ryL~~~~~~w~~a~ 1072 (1190) T TIGR02784 993 PLAPSGLSAAIDSAEPGEAVRSTLLSPVLGEKTAARAFALLRGTLLHRLLQHLPDLPPEEREDAARRYLARSAADWPEAE 1072 (1190) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 42676665334467874101001010113787657689999999999999626798867779999998741024578688 Q ss_pred HHHHHHHHHHHHHHHHC---CCCCCEEEEEE--EEEEECCC-EEEEEEEEEEEEECC--EEEEEEEECCCCCCCCCCC-- Q ss_conf 78899999999999850---37873688775--53200044-058999999998599--7999981136887674466-- Q gi|254780124|r 74 DTEMASSVSMVLAYVRT---FSGPFLSETEV--PLEPFTTE-PGATGTADILIFNST--QWIIVDFKYGAGVPVKAEN-- 143 (388) Q Consensus 74 ~~e~~~~v~~~~~~~r~---~~~~~~ve~E~--~~~~~~~~-~~~~GtiD~I~~~dg--~l~IiDyKtGk~~~v~a~~-- 143 (388) T Consensus 1073 R~~l~~~v~~vL~~p~~~~~F~~~SRAEV~i~G~l~~~g~~P~avSG~IDRL~v~~~kk~V~iVDyKTNr~~P~~~~e~p 1152 (1190) T TIGR02784 1073 REKLLAAVLAVLDDPRLAPVFAEGSRAEVAIMGTLKEGGKQPLAVSGQIDRLAVDEDKKRVLIVDYKTNRPVPKTAEEVP 1152 (1190) T ss_pred HHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHH T ss_conf 99999999998416013200477773213454652358898516601688877737887899986216889888976521 Q ss_pred ---CHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE Q ss_conf ---879999999999843835676513899999830 Q gi|254780124|r 144 ---NTQLMLYACGALHQYGDIFGRPEALTLTIIQPR 176 (388) Q Consensus 144 ---n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr 176 (388) T Consensus 1153 ~~Y~~QlA~Yr~~L~~lYPg-----~~v~a~Ll~Te 1183 (1190) T TIGR02784 1153 PAYLRQLALYRALLRPLYPG-----RAVEAALLWTE 1183 (1190) T ss_pred HHHHHHHHHHHHHHHHHCCC-----CEEEEEEEECC T ss_conf 89999999999998865889-----75999888627

HHsearch alignment for GI: 254780124 and conserved domain: TIGR02784