Query gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 388 No_of_seqs 219 out of 911 Neff 7.5 Searched_HMMs 33803 Date Sun May 22 08:23:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780124.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3l0a_A Putative exonuclease; 99.9 3.6E-24 1.1E-28 177.9 16.3 225 5-247 17-263 (266) 2 >3h4r_A Exodeoxyribonuclease 8 99.9 2.8E-23 8.4E-28 172.0 10.4 223 3-236 9-264 (265) 3 >1w36_B RECB, exodeoxyribonucl 98.9 5.3E-10 1.6E-14 84.8 2.8 182 5-198 17-236 (246) 4 >2vld_A NUCS, UPF0286 protein 84.8 2.6 7.5E-05 21.1 10.1 61 88-159 17-79 (130) 5 >2p2w_A Citrate synthase; tran 50.0 8.7 0.00026 17.6 1.8 60 275-341 17-77 (101) 6 >3h1t_A Type I site-specific r 41.1 21 0.00062 15.1 7.2 86 110-201 70-157 (178) 7 >2elu_A Zinc finger protein 40 41.1 10 0.00031 17.1 1.0 13 224-236 8-20 (37) 8 >1ckm_A MRNA capping enzyme; n 39.4 12 0.00035 16.8 1.1 28 115-142 3-31 (78) 9 >3fov_A UPF0102 protein RPA032 37.4 24 0.0007 14.8 6.1 40 113-152 50-92 (134) 10 >3kal_A Homoglutathione synthe 35.6 25 0.00075 14.6 3.0 34 267-300 134-167 (257) 11 >2c6x_A Citrate synthase 1; tr 33.4 27 0.00081 14.4 2.7 37 275-318 18-54 (107) 12 >1aj8_A Citrate synthase; hype 32.8 22 0.00065 15.0 1.6 37 276-319 59-95 (142) 13 >1klr_A Zinc finger Y-chromoso 31.1 18 0.00052 15.6 0.9 11 227-237 4-14 (30) 14 >1kea_A Possible G-T mismatche 30.1 23 0.00067 14.9 1.3 20 224-243 89-108 (110) 15 >2ebb_A Pterin-4-alpha-carbino 27.3 28 0.00083 14.3 1.4 28 290-317 14-43 (101) 16 >1csh_A Citrate synthase; lyas 26.7 35 0.001 13.6 4.5 39 273-318 24-62 (117) 17 >1a6b_B Momulv, zinc finger pr 22.1 43 0.0013 13.1 1.9 21 222-242 7-31 (40) 18 >3jst_A Putative pterin-4-alph 20.9 46 0.0014 12.9 4.8 28 290-317 17-47 (97) 19 >1u6p_A GAG polyprotein; MLV, 20.6 46 0.0014 12.9 2.1 21 221-241 19-43 (56) 20 >2hc4_A Vitamin D receptor; al 20.2 32 0.00095 13.9 0.5 10 226-235 27-36 (251) No 1 >>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} (A:) Probab=99.93 E-value=3.6e-24 Score=177.86 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=146.2 Q ss_pred CCCCCCCHHHHHC------CCHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 5618423677871------83238862--138999898899989999999999724576534322010456453775788 Q gi|254780124|r 5 AFLSASSSHRWLK------CPIAPTLE--SKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTE 76 (388) Q Consensus 5 A~LSpSs~~rwl~------CP~s~~Le--~~~pd~~S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~~~~~~~~~~~e 76 (388) ..||||++++|+. ||.++.+. .++|...+.++..||++|.++|........... .......+.....+. T Consensus 17 ~~~S~S~l~~~~~~~~~~~cp~~~~~~~~~~~~~~~~~a~~~Gt~iH~~le~~~~~~~~~~~---~~~~~~~~~~~~~~~ 93 (266) T 3l0a_A 17 EYXSVSGYKDFAGTYGKXPCEFYGXEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNP---EIFTQKGELKANFKQ 93 (266) T ss_dssp HCEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHTCHHHHHHHCG---GGBCTTSSBCHHHHH T ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHHHHHH T ss_conf 65478689998449510007799999861767888987899978999998727676544173---100212056899999 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCC-------------- Q ss_conf 999999999998503787368877553200044058999999998599799998113688767446-------------- Q gi|254780124|r 77 MASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAE-------------- 142 (388) Q Consensus 77 ~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~-------------- 142 (388) ....+..+..... .......+.|+.+....++..+.|++|+|+ +.+.|+|||||+.+..... T Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~E~~~~~~~~g~~l~GriD~id---~~~~IiDyKT~~~~~~~~~~~~~~~~~~~~~~~ 169 (266) T 3l0a_A 94 AEEIIARIERDEY-FXKYXSGQKQVIXTGELFGAKWKIKXDSYI---PGVAIVDLKVXASITDLKWVKDIGYLDFVRYWG 169 (266) T ss_dssp HHHHHHHHHTCHH-HHHHTTSEEEEEEEEEETTEEEEEEEEEEE---TTTEEEEEEEESCSSCCEEETTTEEECHHHHTT T ss_pred HHHHHHHHHHCCH-HHHHCCCCEEEEEEEEECCEEEEEEEEEEE---CCCEEEEEEECCCCCHHHCCCCHHHHHHHHHCC T ss_conf 9999999995704-566435763789999876937651467993---687599954336565221244112355788608 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 68799999999998438356765138999998304887754302589889999999999999999857765304776678 Q gi|254780124|r 143 NNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYG 222 (388) Q Consensus 143 ~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~~ 222 (388) ...||.+|++++.+.++.. +.+.++..+......+.+.+++.+.+....+.+...+..+... ..+.+++ T Consensus 170 y~~Ql~~Y~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~-----~~~~~~p 238 (266) T 3l0a_A 170 YDIQGAVYQEIVRQNTGEK------LPFFIAGATKQTEPDIRIIHVTDNYLQEALHXVEXNXPRILRV-----KNGEVEP 238 (266) T ss_dssp HHHHHHHHHHHHHHHHSCC------CCEEEEEEECSSSCCEEEEEECHHHHHHHHHHHHHHHHHHHHH-----HTTSSCC T ss_pred HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH-----HCCCCCC T ss_conf 3999999999999986898------7359999977898732388479899999999999999999999-----7598479 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 8866667257644562013467876 Q gi|254780124|r 223 VNDDSCRFCRAKVRCPALSRHVLLE 247 (388) Q Consensus 223 ~~g~~CrfC~~k~~Cra~a~~~l~~ 247 (388) .++++|+||+|+..|...-..+... T Consensus 239 ~~~~~C~~C~~~~~c~~~~~~~~~~ 263 (266) T 3l0a_A 239 DRCELCDCCRHNRVLKKPISIXDLT 263 (266) T ss_dssp CCCSCSHHHHHHCCCCSCCCHHHHH T ss_pred CCCCCCCCCCCCCHHCCCCCHHHHH T ss_conf 9999798861011011201199983 No 2 >>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} (A:) Probab=99.90 E-value=2.8e-23 Score=171.99 Aligned_cols=223 Identities=13% Similarity=0.040 Sum_probs=140.4 Q ss_pred CCCCCCCCCHHHHHCCCHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------C------- Q ss_conf 775618423677871832388621--389998988999899999999997245765343220104-------5------- Q gi|254780124|r 3 HHAFLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVSHQKLT-------F------- 66 (388) Q Consensus 3 ~HA~LSpSs~~rwl~CP~s~~Le~--~~pd~~S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~-------~------- 66 (388) .+..||+|++.+|+.||.+++|+. +++.+.++++.+||++|.+++.+.+.............. . T Consensus 9 ~~~~~S~S~l~~~~~Cp~~~~~~~~~~~~~~~~~~~~~G~~~H~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (265) T 3h4r_A 9 AGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFLMEC 88 (265) T ss_dssp --CCBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC------------------------- T ss_pred CCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 89983988999998599999999737899999779987299999874722321233246630234566667999998655 Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCC Q ss_conf -64537757889999999999985-------0378736887755320004405899999999859979999811368876 Q gi|254780124|r 67 -ENDTRIVDTEMASSVSMVLAYVR-------TFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVP 138 (388) Q Consensus 67 -~~~~~~~~~e~~~~v~~~~~~~r-------~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~ 138 (388) ........+.+...+..++.... ..........|+.+.....+..+.|++|+|+ +|.+.|||||||+.+. T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~G~iD~i~--~~~~~IiDyKTg~~~~ 166 (265) T 3h4r_A 89 ASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PEFHWIMDVKTTADIQ 166 (265) T ss_dssp ---------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GGGTEEEEEEEESCHH T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEEEE--CCCCEEEEEEECCCHH T ss_conf 53165421299999999999999829546766542023147899997676648888899997--7997488983026777 Q ss_pred CC------CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 74------46687999999999984383567651389999983048--87754302589889999999999999999857 Q gi|254780124|r 139 VK------AENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVR--TGSPINEWVISADDLLEKAKEFKERGTLALSL 210 (388) Q Consensus 139 v~------a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~--~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~ 210 (388) .. ....+||.+|++++.+.++... ....++..... ....+.....+.+.+....+.+...+..+... T Consensus 167 ~~~~~~~~~~~~~Ql~lY~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265) T 3h4r_A 167 RFKTAYYDYRYHVQDAFYSDGYEAQFGVQP-----TFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDC 241 (265) T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHSSCC-----EEEEEEEESSCBTTBCCEEEEECCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCCCCC-----CEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH T ss_conf 653201233779999999999998429998-----639999983356776227999689999999999999999999999 Q ss_pred HHHHHCCCCCC-CCCCCCCCCCCCCCC Q ss_conf 76530477667-888666672576445 Q gi|254780124|r 211 KSKRAVSLEHY-GVNDDSCRFCRAKVR 236 (388) Q Consensus 211 ~a~~~~~~~~~-~~~g~~CrfC~~k~~ 236 (388) .. ++.++ ++++++|+||+||+. T Consensus 242 ~~----~~~~~~~~~~~~C~~C~~k~~ 264 (265) T 3h4r_A 242 LN----TDEWPAIKTLSLPRWAKEYAN 264 (265) T ss_dssp HH----TCCCCCCCCCCCCTTCTTCC- T ss_pred HH----CCCCCCCCCCCCCCCCCCCCC T ss_conf 96----697999864678845110005 No 3 >>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:886-964,B:1014-1180) Probab=98.91 E-value=5.3e-10 Score=84.79 Aligned_cols=182 Identities=13% Similarity=0.046 Sum_probs=91.4 Q ss_pred CCCCCCCHHHHHCCCHHHHHHC---------CCCCCC-C-HH-----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 5618423677871832388621---------389998-9-88-----999899999999997245765343220104564 Q gi|254780124|r 5 AFLSASSSHRWLKCPIAPTLES---------KIPQTT-S-IY-----ASEGTFAHNLLAHCLEQGVDAETVSHQKLTFEN 68 (388) Q Consensus 5 A~LSpSs~~rwl~CP~s~~Le~---------~~pd~~-S-~a-----A~~GT~~H~llE~~l~~~l~~~~~~~~~~~~~~ 68 (388) +..|.|+..|-.+-+..-.+.. ..|+.+ | .+ |.-||+.|.++|..-- ..+........... T Consensus 17 ~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~h~~~e~~~~---~~~~l~E~e~~~~l 93 (246) T 1w36_B 17 RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDF---ARNKQVEMEFYLPI 93 (246) T ss_dssp EEESSCSSSCSSCTTHHHHCTTSCTTCCCCCCSCCCSSCCGGGSCCSHHHHHHHHHHTTSCCS---GGGEEEEEEEEEEE T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---HHCCEECCCCCCCC T ss_conf 013714543223555444455545554344321027767800057648669999999984889---20325412555234 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCC------ Q ss_conf 53775788999999999998503787368877553200044058999999998599799998113688767446------ Q gi|254780124|r 69 DTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAE------ 142 (388) Q Consensus 69 ~~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~------ 142 (388) ......+.+...+.. ...... .+..+.+......+.|+||||...+|++.|||||||+-...... T Consensus 94 ~~~~~~~~l~~~l~~-------e~~~~~--~e~~l~~~~~~~~i~G~IDlv~~~dd~~~IIDYKT~~~~~~~~~~~~~al 164 (246) T 1w36_B 94 SEPLIASQLDTLIRQ-------FDPLSA--GCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAM 164 (246) T ss_dssp CSCCCHHHHHHHHHH-------HCSSTT--SCCCCCSCCCEEEEEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHH T ss_pred CCCCCHHHHHHHHHH-------CCCCCC--CCCCCCCCCCEEEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHH T ss_conf 631008789999973-------262001--25432344540269999999999999999997178998998300289999 Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCC----CCEEEEEEEEEECCCC----CCCCCCCCCHHHHHHHHH Q ss_conf --------6879999999999843835676----5138999998304887----754302589889999999 Q gi|254780124|r 143 --------NNTQLMLYACGALHQYGDIFGR----PEALTLTIIQPRVRTG----SPINEWVISADDLLEKAK 198 (388) Q Consensus 143 --------~n~QL~lYALgA~~~~~~~~~~----~~~v~~~I~qpr~~~~----~~vs~~~~s~eeL~~~~~ 198 (388) ..+||.+|++++.+.++..... .....+.-+.+|..+. ..+-.+..+.+.+..+.+ T Consensus 165 ~~~~~~~~Y~~QL~lYa~AL~~~~~~~V~~~ly~l~~G~vi~iflrg~~~~~~~~G~~~~~~~~e~i~~l~~ 236 (246) T 1w36_B 165 AAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDE 236 (246) T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCCCCEEEESSSCCTTCTTBSCCBCCCCSSHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHH T ss_conf 999987863999999999999997072679866650781799995798999999976841799999999999 No 4 >>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} (A:122-251) Probab=84.81 E-value=2.6 Score=21.14 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=40.6 Q ss_pred HHCCC-CCCEEEEEEEEEEECCCEEEEEEEEEEEEE-CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 85037-873688775532000440589999999985-9979999811368876744668799999999998438 Q gi|254780124|r 88 VRTFS-GPFLSETEVPLEPFTTEPGATGTADILIFN-STQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYG 159 (388) Q Consensus 88 ~r~~~-~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~-dg~l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~~ 159 (388) ..... +..++..|.++. -|+||.+.++ +|.++||.+|.|+... +.--|+..|+-....... T Consensus 17 ~~~l~~g~~~v~~E~~~~--------~g~IDll~~d~~~~~ViIElK~~~~~~---~~i~Ql~~Y~~~~~~~~~ 79 (130) T 2vld_A 17 PRVIEEGFKPIYREKPIR--------HGIVDVXGVDKDGNIVVLELKRRKADL---HAVSQXKRYVDSLKEEYG 79 (130) T ss_dssp GGGTCTTCEEEEEEEEET--------TEEEEEEEECTTSCEEEEEECSSCBCH---HHHHHHHHHHHHHHHHHC T ss_pred HHHHCCCCEEEEEEEECC--------CCCEEEEEEECCCCEEEEEEEECCCCH---HHHHHHHHHHHHHHHCCC T ss_conf 998678968999999718--------886689999179999999997047987---489999999999861259 No 5 >>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima} (A:213-313) Probab=49.98 E-value=8.7 Score=17.63 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=36.0 Q ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCC-CHHHHHHHHHH Q ss_conf 99999999999789847852320588878611698999999986165100000138-98899997400 Q gi|254780124|r 275 KACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILK-TPKELEQLYKE 341 (388) Q Consensus 275 ~~v~~~a~~~~~~G~~~~g~Klv~gr~~~r~~~d~~~~~~~l~~~~~~~~~~~~l~-~~~~~ek~~~~ 341 (388) .++++++...+.+|+.+||| |.|.|++.|--...|.+...+.....+++ .-.++|+++.+ T Consensus 17 ~~~~~~i~~~l~~~~~i~Gf-------GH~vy~~~DPR~~~l~~~~~~~~~~~~~~~~a~~ie~~~~~ 77 (101) T 2p2w_A 17 DRVEEFVQKCLKEKRKIMGF-------GHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIVS 77 (101) T ss_dssp GGHHHHHHHHHHHTCCCTTB-------CCSSCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 12799999999638766676-------75321013420577887888751147899999999999985 No 6 >>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:1-169,A:362-370) Probab=41.12 E-value=21 Score=15.15 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=49.9 Q ss_pred EEEEEEEEEEEE-ECCE-EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCC Q ss_conf 058999999998-5997-99998113688767446687999999999984383567651389999983048877543025 Q gi|254780124|r 110 PGATGTADILIF-NSTQ-WIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWV 187 (388) Q Consensus 110 ~~~~GtiD~I~~-~dg~-l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~ 187 (388) ....|++|.+.. .++. +.||.-|.-.... .+.-.|+.-||...-..|..+.++.. ..++.........++. - T Consensus 70 ~~~~~r~Dy~l~~~~~~p~~viEaK~~~~~l--~~~~~Q~~~Ya~~~~~~~~ilTNG~~---~~~~~~~~~~~~~~~~-~ 143 (178) T 3h1t_A 70 RGEQKRADYLLKYTRDFPIAVVEAKPENSPV--GQGXQQAKDYAEILGLKFAYSTNGHE---ILEFDYTTGEEQLLSR-F 143 (178) T ss_dssp ECCCCEEEEEEEEETTEEEEEEEECCTTSCG--GGSHHHHHHHHHHHTCSEEEEECSSC---EEEEETTTCCEEEESS-C T ss_pred CCCCCCCCEEEECCCCCEEEEEECCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCE---EEEEECCCCCCCCCCC-C T ss_conf 6887875089987799089999637897799--99999999978866887799979964---8986469997313356-6 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 89889999999999 Q gi|254780124|r 188 ISADDLLEKAKEFK 201 (388) Q Consensus 188 ~s~eeL~~~~~~v~ 201 (388) .+.++|..+..... T Consensus 144 ~~~~~l~~~~~~~k 157 (178) T 3h1t_A 144 PTPDELFKRLCGDE 157 (178) T ss_dssp CCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 78368999997420 No 7 >>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A (A:) Probab=41.06 E-value=10 Score=17.15 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=9.4 Q ss_pred CCCCCCCCCCCCC Q ss_conf 8666672576445 Q gi|254780124|r 224 NDDSCRFCRAKVR 236 (388) Q Consensus 224 ~g~~CrfC~~k~~ 236 (388) -..|||||+-|-. T Consensus 8 ikqhcrfckkkys 20 (37) T 2elu_A 8 IKQHCRFCKKKYS 20 (37) T ss_dssp CCCEETTTTEECS T ss_pred HHHHHHHHHHHHH T ss_conf 8999999998878 No 8 >>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} (A:240-317) Probab=39.36 E-value=12 Score=16.80 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=23.8 Q ss_pred EEEEEEEE-CCEEEEEEEECCCCCCCCCC Q ss_conf 99999985-99799998113688767446 Q gi|254780124|r 115 TADILIFN-STQWIIVDFKYGAGVPVKAE 142 (388) Q Consensus 115 tiD~I~~~-dg~l~IiDyKtGk~~~v~a~ 142 (388) |+|.|+.+ +|++-|.|=|-++.+++... T Consensus 3 TvDFiim~~~GTiGi~DP~~rkNv~vgK~ 31 (78) T 1ckm_A 3 TIDFIIMSEDGTIGIFDPNLRKNVPVGKL 31 (78) T ss_dssp CEEEEECSTTCCEEEEETTTTEEEECCCC T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 17999993478644215543235754545 No 9 >>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009} (A:) Probab=37.42 E-value=24 Score=14.78 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=27.7 Q ss_pred EEEEEEEEEECCEEEEEEEECCCC--CCCCCCCCH-HHHHHHH Q ss_conf 999999998599799998113688--767446687-9999999 Q gi|254780124|r 113 TGTADILIFNSTQWIIVDFKYGAG--VPVKAENNT-QLMLYAC 152 (388) Q Consensus 113 ~GtiD~I~~~dg~l~IiDyKtGk~--~~v~a~~n~-QL~lYAL 152 (388) .|=||.|..++++|+.|.-||.++ .+.++-+.. |-.+... T Consensus 50 ~GEIDlIa~~~~~LvFVEVK~R~~~~~~~eav~~~K~~ri~~a 92 (134) T 3fov_A 50 CGEIDLVAQRDALVAFVEVKARGNVDDAAYAVTPRQQSRIVAA 92 (134) T ss_dssp TEEEEEEEEETTEEEEEEEEEC------CCCCCHHHHHHHHHH T ss_pred CCCCCEEEECCCEEEEEEEEEECCCCCHHHCCCHHHHHHHHHH T ss_conf 9960679981999999998874488997673999999999999 No 10 >>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A* (A:1-100,A:144-229,A:429-499) Probab=35.58 E-value=25 Score=14.59 Aligned_cols=34 Identities=6% Similarity=0.120 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC Q ss_conf 3899999999999999999789847852320588 Q gi|254780124|r 267 ISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR 300 (388) Q Consensus 267 ~~~l~~w~~~v~~~a~~~~~~G~~~~g~Klv~gr 300 (388) -..|-.++..+..|.+++.-....+..-.+.++. T Consensus 134 FggLst~v~~lHkyll~~~g~~~~l~~k~iPeN~ 167 (257) T 3kal_A 134 FALIGCLMTGLHKSLLSQYGKFLGLNSNRVPANN 167 (257) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCGGGSCCCC T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 1026789999999999852433345545588871 No 11 >>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis} (A:213-319) Probab=33.41 E-value=27 Score=14.36 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999999999789847852320588878611698999999986 Q gi|254780124|r 275 KACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTS 318 (388) Q Consensus 275 ~~v~~~a~~~~~~G~~~~g~Klv~gr~~~r~~~d~~~~~~~l~~ 318 (388) +++++|..+.+.+|+.+||| |.|.|++.|-=...|+. T Consensus 18 ~~~~~~i~~~l~~~~~i~Gf-------GHrvyk~~DPRa~~l~~ 54 (107) T 2c6x_A 18 EHAEAYLKEKLEKGERLMGF-------GHRVYKTKDPRAEALRQ 54 (107) T ss_dssp TTHHHHHHHHHHTTCCCTTB-------CCSSCSSCCHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCCC-------CCCCCCCCHHHHHHHHH T ss_conf 01799999999669945145-------66425566067889999 No 12 >>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} (A:1-39,A:218-320) Probab=32.80 E-value=22 Score=15.01 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 99999999997898478523205888786116989999999861 Q gi|254780124|r 276 ACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSV 319 (388) Q Consensus 276 ~v~~~a~~~~~~G~~~~g~Klv~gr~~~r~~~d~~~~~~~l~~~ 319 (388) +++++....+.+|+.+||| |.|.|++.|-=+..|.+. T Consensus 59 ~~~~~i~~~l~~~~~ipGF-------GHrvyk~~DPRa~~L~~~ 95 (142) T 1aj8_A 59 KVEEWFFKALQQKRKIMGA-------GHRVYKTYDPRARIFKKY 95 (142) T ss_dssp GHHHHHHHHHHHTCCCTTB-------CCSSCSSCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCC-------CCCCCCCCCHHHHHHHHH T ss_conf 0699999861257654334-------763356653068899998 No 13 >>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} (A:) Probab=31.06 E-value=18 Score=15.62 Aligned_cols=11 Identities=18% Similarity=0.781 Sum_probs=8.6 Q ss_pred CCCCCCCCCCC Q ss_conf 66725764456 Q gi|254780124|r 227 SCRFCRAKVRC 237 (388) Q Consensus 227 ~CrfC~~k~~C 237 (388) .|++|.||..= T Consensus 4 ~Cq~C~~r~ad 14 (30) T 1klr_A 4 QCQYCEFRSAD 14 (30) T ss_dssp CCSSSSCCCSC T ss_pred CCCCCCCCCCC T ss_conf 04413001366 No 14 >>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} (A:1-28,A:140-221) Probab=30.13 E-value=23 Score=14.89 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=16.5 Q ss_pred CCCCCCCCCCCCCCCHHHHH Q ss_conf 86666725764456201346 Q gi|254780124|r 224 NDDSCRFCRAKVRCPALSRH 243 (388) Q Consensus 224 ~g~~CrfC~~k~~Cra~a~~ 243 (388) ....|.-|+.+..|++..+. T Consensus 89 k~P~C~~CPL~~~C~~~~~g 108 (110) T 1kea_A 89 RKPKCEKCGMSKLCSYYEKC 108 (110) T ss_dssp SSCCGGGCTTTTTCHHHHTC T ss_pred CCCCCCCCCCCCCCCCCCCC T ss_conf 89999889891019372776 No 15 >>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus} (A:) Probab=27.28 E-value=28 Score=14.30 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=17.3 Q ss_pred CCCCCEECCCCCCCCCCC--CHHHHHHHHH Q ss_conf 478523205888786116--9899999998 Q gi|254780124|r 290 EIQGYQLVEGRKGNRSFK--DINRAQELLT 317 (388) Q Consensus 290 ~~~g~Klv~gr~~~r~~~--d~~~~~~~l~ 317 (388) ++|||+++.|+.=.|.|. |-..+...+. T Consensus 14 ~lpgW~~~d~~~l~r~f~f~~f~~a~~f~~ 43 (101) T 2ebb_A 14 KADGWKLADERWIVKKYRFQDYLQGIEFVR 43 (101) T ss_dssp TSTTCEEETTTEEEEEEECSSHHHHHHHHH T ss_pred CCCCCEECCCCCEEEEEEECCHHHHHHHHH T ss_conf 498977628970999999799999999999 No 16 >>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} (A:272-388) Probab=26.72 E-value=35 Score=13.63 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHH Q ss_conf 9999999999999789847852320588878611698999999986 Q gi|254780124|r 273 YVKACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTS 318 (388) Q Consensus 273 w~~~v~~~a~~~~~~G~~~~g~Klv~gr~~~r~~~d~~~~~~~l~~ 318 (388) ..++++++....+..|+.+||| |.|.|++.|-=...|++ T Consensus 24 ~~~~a~~~v~~~l~~~~~i~Gf-------GH~vy~~~DPRa~~L~~ 62 (117) T 1csh_A 24 SDEKLRDYIWNTLNSGRVVPGY-------GHAVLRKTDPRYTCQRE 62 (117) T ss_dssp CHHHHHHHHHHHHHTTCCCTTB-------CCSSCCSCCHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCEEECC-------CCCCCCCCCCCHHHHHH T ss_conf 8899999999744368776323-------76556788852389999 No 17 >>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus; HET: DNA; NMR {Synthetic} (B:) Probab=22.09 E-value=43 Score=13.06 Aligned_cols=21 Identities=33% Similarity=0.963 Sum_probs=14.8 Q ss_pred CCCCCCCCCCCCC----CCCCHHHH Q ss_conf 8886666725764----45620134 Q gi|254780124|r 222 GVNDDSCRFCRAK----VRCPALSR 242 (388) Q Consensus 222 ~~~g~~CrfC~~k----~~Cra~a~ 242 (388) ....++|-||+-+ ..||.+-. T Consensus 7 ~L~kDQCAyCke~GHW~~dCPk~~~ 31 (40) T 1a6b_B 7 QLDRDQCAYCKEKGHWAKDCPKKPR 31 (40) T ss_dssp SCCSSSCSSSCCTTCCTTSCSSSCC T ss_pred CCCCHHHHHHHHCCCHHHHCCCCCC T ss_conf 6660163777534705430866778 No 18 >>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics center for infectious disease; 2.10A {Brucella melitensis} (A:) Probab=20.88 E-value=46 Score=12.90 Aligned_cols=28 Identities=39% Similarity=0.744 Sum_probs=16.4 Q ss_pred CCCCCEECCCCCC-CCCC--CCHHHHHHHHH Q ss_conf 4785232058887-8611--69899999998 Q gi|254780124|r 290 EIQGYQLVEGRKG-NRSF--KDINRAQELLT 317 (388) Q Consensus 290 ~~~g~Klv~gr~~-~r~~--~d~~~~~~~l~ 317 (388) ++|||++++|+.. .|.| .|-..+...+. T Consensus 17 ~l~~W~~~~d~~~l~r~f~f~~f~~a~~f~~ 47 (97) T 3jst_A 17 ALDGWQKVDGREAITRSFKFKDFSTAFGFMA 47 (97) T ss_dssp TSTTCEECTTSSCEEEEEECSSHHHHHHHHH T ss_pred CCCCCEEECCCCEEEEEEECCCHHHHHHHHH T ss_conf 2999767479764999998598899999999 No 19 >>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A mismatch, U-U mismatch, A-C mismatch, zinc finger, NC; HET: AP7; NMR {Moloney murine leukemia virus} (A:) Probab=20.59 E-value=46 Score=12.86 Aligned_cols=21 Identities=29% Similarity=0.858 Sum_probs=14.7 Q ss_pred CCCCCCCCCCCCCC----CCCCHHH Q ss_conf 78886666725764----4562013 Q gi|254780124|r 221 YGVNDDSCRFCRAK----VRCPALS 241 (388) Q Consensus 221 ~~~~g~~CrfC~~k----~~Cra~a 241 (388) ..-..++|-||+-+ .-||.+- T Consensus 19 ppL~KDQCAyCKe~GHW~~dCPkk~ 43 (56) T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKKP 43 (56) T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTCC T ss_pred CCCCCCHHHHHHHCCCHHHHCCCCC T ss_conf 9655116055511473020086667 No 20 >>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* (A:1-150,A:202-302) Probab=20.17 E-value=32 Score=13.90 Aligned_cols=10 Identities=20% Similarity=0.291 Sum_probs=6.2 Q ss_pred CCCCCCCCCC Q ss_conf 6667257644 Q gi|254780124|r 226 DSCRFCRAKV 235 (388) Q Consensus 226 ~~CrfC~~k~ 235 (388) ..|+||+|+- T Consensus 27 n~Cq~CRlqK 36 (251) T 2hc4_A 27 SYSDFVRFRP 36 (251) T ss_dssp TCGGGGGSCC T ss_pred CHHHHCCCCC T ss_conf 5524304788 Done!