Query gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 388
No_of_seqs 219 out of 911
Neff 7.5
Searched_HMMs 23785
Date Sun May 22 21:23:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780124.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0a_A Putative exonuclease; R 99.7 7.3E-16 3E-20 122.3 15.9 211 6-242 18-252 (266)
2 3h4r_A Exodeoxyribonuclease 8; 99.6 7.5E-15 3.1E-19 115.6 10.1 196 6-208 12-239 (265)
3 1w36_B RECB, exodeoxyribonucle 98.8 9.6E-09 4E-13 75.5 6.3 47 112-158 1062-1122(1180)
4 1w36_C RECC, exodeoxyribonucle 97.0 0.0091 3.8E-07 36.2 10.6 141 6-157 831-990 (1122)
5 2vld_A NUCS, UPF0286 protein p 73.4 4.1 0.00017 18.8 9.5 16 114-129 48-65 (251)
6 1ru0_A DCOH-like protein dcohm 68.3 3.8 0.00016 19.0 3.3 45 250-316 5-52 (105)
7 2elu_A Zinc finger protein 406 41.2 7.2 0.0003 17.2 1.0 13 224-236 8-20 (37)
8 1klr_A Zinc finger Y-chromosom 35.9 9.3 0.00039 16.5 0.9 10 227-236 4-13 (30)
9 2gig_A Type II restriction enz 30.6 18 0.00074 14.6 1.6 39 114-152 110-155 (257)
10 2xi5_A RNA polymerase L, L-pro 28.4 23 0.00096 13.9 1.9 21 114-134 77-97 (184)
11 2v6u_A Pterin-4A-carbinolamine 23.9 28 0.0012 13.3 2.2 28 289-316 19-49 (104)
12 1a6b_B Momulv, zinc finger pro 23.0 27 0.0011 13.4 1.4 19 223-241 8-30 (40)
13 1r5s_A GAP junction alpha-1 pr 20.2 29 0.0012 13.2 1.1 15 289-303 31-45 (132)
No 1
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale}
Probab=99.71 E-value=7.3e-16 Score=122.30 Aligned_cols=211 Identities=17% Similarity=0.138 Sum_probs=117.5
Q ss_pred CCCCCCHHHHHCCCHHH--------HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHH
Q ss_conf 61842367787183238--------86213899989889998999999999972457--653432201045645377578
Q gi|254780124|r 6 FLSASSSHRWLKCPIAP--------TLESKIPQTTSIYASEGTFAHNLLAHCLEQGV--DAETVSHQKLTFENDTRIVDT 75 (388)
Q Consensus 6 ~LSpSs~~rwl~CP~s~--------~Le~~~pd~~S~aA~~GT~~H~llE~~l~~~l--~~~~~~~~~~~~~~~~~~~~~ 75 (388)
.||.|++.+|+.||... ++....+.++++++..||++|.++|..++... ..+.. ........+ ...-.
T Consensus 18 y~S~S~ik~~~~~~~~~~~~a~~~a~~~~~~~~~~t~al~~Gt~vH~~le~~~~~~~~~~~~~~-~~~~~~~~e-~~~~~ 95 (266)
T 3l0a_A 18 YMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPEIF-TQKGELKAN-FKQAE 95 (266)
T ss_dssp CEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHTCHHHHHHHCGGGB-CTTSSBCHH-HHHHH
T ss_pred EECHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCC-CCCCHHHHH-HHHHH
T ss_conf 1269899998439311002688999860777889987998718999986574553420184201-333144899-99999
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCC--------------
Q ss_conf 899999999999850378736887755320004405899999999859979999811368876744--------------
Q gi|254780124|r 76 EMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKA-------------- 141 (388)
Q Consensus 76 e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a-------------- 141 (388)
.|.+.+...- ..... ...+.|+.+...+.+..+.|++|++..+ + .|+|+||.+......
T Consensus 96 ~m~~~~~~~~-~~~~~---~~~~~E~~~~~~~~gv~~kg~iD~i~~~-~--~ivDlKtt~~~~~~~~~~~~~~~~~~~~~ 168 (266)
T 3l0a_A 96 EIIARIERDE-YFMKY---MSGQKQVIMTGELFGAKWKIKMDSYIPG-V--AIVDLKVMASITDLKWVKDIGYLDFVRYW 168 (266)
T ss_dssp HHHHHHHTCH-HHHHH---TTSEEEEEEEEEETTEEEEEEEEEEETT-T--EEEEEEEESCSSCCEEETTTEEECHHHHT
T ss_pred HHHHHHHHCC-HHHHH---CCCCCEEEEEEEECCEEEEEEEEEEECC-C--CEEEEEEEECCCCCCCCCCCCHHHHHHHC
T ss_conf 9999999670-03555---1577247899977585874067899568-9--72676774115632244321035577752
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 66879999999999843835676513899999830488775430258988999999999999999985776530477667
Q gi|254780124|r 142 ENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHY 221 (388)
Q Consensus 142 ~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~ 221 (388)
....||.+|+.+..+.++... . ..++..-......+..+.++.+.+..-.+.+...+..+.... .++..
T Consensus 169 ~Y~~Q~a~Y~~~l~~~~g~~~---~---~~~v~v~k~~p~~~~~~~~~~~~l~~~~~~v~~~i~~i~~~~-----~~~~~ 237 (266)
T 3l0a_A 169 GYDIQGAVYQEIVRQNTGEKL---P---FFIAGATKQTEPDIRIIHVTDNYLQEALHMVEMNMPRILRVK-----NGEVE 237 (266)
T ss_dssp THHHHHHHHHHHHHHHHSCCC---C---EEEEEEECSSSCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH-----TTSSC
T ss_pred CHHHHHHHHHHHHHHHHCCCC---C---EEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH-----CCCCC
T ss_conf 889999999999999868986---3---799999788887604897798999999999999999999997-----28968
Q ss_pred CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 888666672576445620134
Q gi|254780124|r 222 GVNDDSCRFCRAKVRCPALSR 242 (388)
Q Consensus 222 ~~~g~~CrfC~~k~~Cra~a~ 242 (388)
+ ++|.+|+| ||..-+
T Consensus 238 p---~~C~~CdY---Cr~~k~ 252 (266)
T 3l0a_A 238 P---DRCELCDC---CRHNRV 252 (266)
T ss_dssp C---CCCSCSHH---HHHHCC
T ss_pred C---CCCCCCCC---CHHHHH
T ss_conf 9---98998987---720300
No 2
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12}
Probab=99.59 E-value=7.5e-15 Score=115.64 Aligned_cols=196 Identities=15% Similarity=0.049 Sum_probs=108.1
Q ss_pred CCCCCCHHHHHCCCHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHH--C-CCCCCCCC----CCCCCC----------
Q ss_conf 618423677871832388621--3899989889998999999999972--4-57653432----201045----------
Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHCLE--Q-GVDAETVS----HQKLTF---------- 66 (388)
Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~--~~pd~~S~aA~~GT~~H~llE~~l~--~-~l~~~~~~----~~~~~~---------- 66 (388)
-||+|+++.|+.||..+++.. +.+.++|+++..||++|.+++...+ . ........ ......
T Consensus 12 ~lS~S~l~~~~~cP~~~~~~~~~~~~~~~t~a~~~Gt~vH~~lle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (265)
T 3h4r_A 12 GISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECAST 91 (265)
T ss_dssp CBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC----------------------------
T ss_pred CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 83988899998699999999727899999879986499999885755523432226502331567899999999886632
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCC--
Q ss_conf -----6453775788999999999998503787368877553200044058999999998599799998113688767--
Q gi|254780124|r 67 -----ENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPV-- 139 (388)
Q Consensus 67 -----~~~~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v-- 139 (388)
.......-..|...+........-.......+++..+.....+..+.|++|++. ++...|+||||++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~~~kgriD~~~--~d~~~iiD~Kt~~~~~~~~ 169 (265)
T 3h4r_A 92 GKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PEFHWIMDVKTTADIQRFK 169 (265)
T ss_dssp ------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GGGTEEEEEEEESCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEEEE--CCCCEEEEEEECCCHHHHH
T ss_conf 77644589999999999999848556765034553799898996577758888789985--6885567640036677777
Q ss_pred ----CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----4466879999999999843835676513899999830488--77543025898899999999999999998
Q gi|254780124|r 140 ----KAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRT--GSPINEWVISADDLLEKAKEFKERGTLAL 208 (388)
Q Consensus 140 ----~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~--~~~vs~~~~s~eeL~~~~~~v~~~a~~~~ 208 (388)
....+.|+.+|+.++.+.++..+ + . ..|++..... .-.+..+.++.+.+..-...+...+....
T Consensus 170 ~~~~~~~Y~~Q~a~Y~~~~~~~~g~~~---~-f-~fi~vek~~~~~~~~v~v~~~~~~~l~~g~~~~~~~l~~~~ 239 (265)
T 3h4r_A 170 TAYYDYRYHVQDAFYSDGYEAQFGVQP---T-F-VFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLS 239 (265)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHSSCC---E-E-EEEEEESSCBTTBCCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCC---C-E-EEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 766513789999999999999629998---4-5-99999865778861389995899999999999999999999
No 3
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.78 E-value=9.6e-09 Score=75.49 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=35.0
Q ss_pred EEEEEEEEEEECCEEEEEEEECCC---CCCCC-----------CCCCHHHHHHHHHHHHHC
Q ss_conf 899999999859979999811368---87674-----------466879999999999843
Q gi|254780124|r 112 ATGTADILIFNSTQWIIVDFKYGA---GVPVK-----------AENNTQLMLYACGALHQY 158 (388)
Q Consensus 112 ~~GtiD~I~~~dg~l~IiDyKtGk---~~~v~-----------a~~n~QL~lYALgA~~~~ 158 (388)
+.|.||+|...+|.+.||||||.+ ..... .....||.+|++++.+.+
T Consensus 1062 l~G~IDlvf~~dg~~~IvDYKTd~lg~~~~~y~~~~l~~~m~~~~Y~lQ~~lY~~AL~r~L 1122 (1180)
T 1w36_B 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 (1180)
T ss_dssp EEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999997278998998410299999999887861999999999999997
No 4
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=97.04 E-value=0.0091 Score=36.22 Aligned_cols=141 Identities=11% Similarity=0.009 Sum_probs=78.6
Q ss_pred CCCCCCHHHHHCCCHHHHHHCCC----CCC-----C-----CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----CCCC
Q ss_conf 61842367787183238862138----999-----8-----9889998999999999972457653432201----0456
Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLESKI----PQT-----T-----SIYASEGTFAHNLLAHCLEQGVDAETVSHQK----LTFE 67 (388)
Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~~~----pd~-----~-----S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~----~~~~ 67 (388)
.+|+|...+|..||..++|+... ++. . -.....+++.|.+++..+...-... ..... ....
T Consensus 831 ~ls~s~L~~f~~~P~~~fl~~~L~~~~~~~~~~~~d~Ep~~ld~L~~~~l~~~ll~~~l~~~~~~~-~~~~~~~~g~LP~ 909 (1122)
T 1w36_C 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER-LFRRFRAAGDLPY 909 (1122)
T ss_dssp CEEHHHHHHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHTCSCS
T ss_pred CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCC
T ss_conf 448999999997968999997448888621224555686667706552499999999871899999-9999997599998
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHH
Q ss_conf 45-37757889999999999985037873688775532000440589999999985997999981136887674466879
Q gi|254780124|r 68 ND-TRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQ 146 (388)
Q Consensus 68 ~~-~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~Q 146 (388)
.. .....+.....++.+.+.+....... .++.++...++..+.|++|.|.- ++ ++.+++|+- .+.+-.+
T Consensus 910 g~~g~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~l~~~~~~L~G~l~~v~~--~~--~v~~~~~~~---~~~~~l~ 979 (1122)
T 1w36_C 910 GAFGEIFWETQCQEMQQLADRVIACRQPG---QSMEIDLACNGVQITGWLPQVQP--DG--LLRWRPSLL---SVAQGMQ 979 (1122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC---EEEEEEEEETTEEEEEEEEEECS--SE--EEEECSSCC---CHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEEEEEECCEEEEEEECCCCC--CC--EEEEEECCC---CHHHHHH
T ss_conf 25569999999999999999998706888---86348984098899998898626--83--599972789---8788999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999984
Q gi|254780124|r 147 LMLYACGALHQ 157 (388)
Q Consensus 147 L~lYALgA~~~ 157 (388)
+-+.-|.+...
T Consensus 980 ~wl~hL~~~a~ 990 (1122)
T 1w36_C 980 LWLEHLVYCAS 990 (1122)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999826
No 5
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=73.43 E-value=4.1 Score=18.81 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=7.1
Q ss_pred EEEEEEEE--ECCEEEEE
Q ss_conf 99999998--59979999
Q gi|254780124|r 114 GTADILIF--NSTQWIIV 129 (388)
Q Consensus 114 GtiD~I~~--~dg~l~Ii 129 (388)
+.+||+++ .||++.|.
T Consensus 48 ~~~~Rli~iK~DGsvlvH 65 (251)
T 2vld_A 48 GEGDRIIIIKPDGSFLIH 65 (251)
T ss_dssp EEEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEECCCCCEEEE
T ss_conf 888589999179728996
No 6
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=68.30 E-value=3.8 Score=18.98 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCC-CCCCC--CHHHHHHHH
Q ss_conf 22005999999999954389999999999999999978984785232058887-86116--989999999
Q gi|254780124|r 250 KDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKG-NRSFK--DINRAQELL 316 (388)
Q Consensus 250 ~~p~~l~~~e~~~~l~~~~~l~~w~~~v~~~a~~~~~~G~~~~g~Klv~gr~~-~r~~~--d~~~~~~~l 316 (388)
.+++.||.+|+.+.|...+ .|||++++++.. .|.|+ |=..+..-+
T Consensus 5 ~~~~~Lt~~ei~~~L~~l~----------------------~~GW~~~~~~~~L~r~f~F~~f~~a~~F~ 52 (105)
T 1ru0_A 5 SDAQWLTAEERDQLIPGLK----------------------AAGWSELSERDAIYKEFSFKNFNQAFGFM 52 (105)
T ss_dssp -CCSBCCHHHHHHHHHHHH----------------------HTTCEECSSSSCEEEEEECSSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCC----------------------CCCCEEECCCCEEEEEEEECCHHHHHHHH
T ss_conf 6876499999999885488----------------------89989977999499999969999999999
No 7
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=41.16 E-value=7.2 Score=17.16 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8666672576445
Q gi|254780124|r 224 NDDSCRFCRAKVR 236 (388)
Q Consensus 224 ~g~~CrfC~~k~~ 236 (388)
-..|||||+-|-.
T Consensus 8 ikqhcrfckkkys 20 (37)
T 2elu_A 8 IKQHCRFCKKKYS 20 (37)
T ss_dssp CCCEETTTTEECS
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999998878
No 8
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.88 E-value=9.3 Score=16.45 Aligned_cols=10 Identities=20% Similarity=0.966 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q ss_conf 6672576445
Q gi|254780124|r 227 SCRFCRAKVR 236 (388)
Q Consensus 227 ~CrfC~~k~~ 236 (388)
.|+||.||..
T Consensus 4 ~cqyc~yrsa 13 (30)
T 1klr_A 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred CCCCCCCCCC
T ss_conf 0441300136
No 9
>2gig_A Type II restriction enzyme hincii; protein DNA complex, indirect readout, DNA intercalation, endonuclease, hydrolase/DNA complex; 1.83A {Haemophilus influenzae} PDB: 2gih_A 2gii_A 2gij_A 3e3y_A 3e40_A 3e41_A 3e42_A 3e43_A 3e44_A 3e45_A 1tx3_A 1tw8_A 1kc6_A 1xhu_A 1xhv_A 2gie_A 2aud_A
Probab=30.58 E-value=18 Score=14.62 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=26.3
Q ss_pred EEEEEEEEECCEEEEEEEECCCCCC-------CCCCCCHHHHHHHH
Q ss_conf 9999999859979999811368876-------74466879999999
Q gi|254780124|r 114 GTADILIFNSTQWIIVDFKYGAGVP-------VKAENNTQLMLYAC 152 (388)
Q Consensus 114 GtiD~I~~~dg~l~IiDyKtGk~~~-------v~a~~n~QL~lYAL 152 (388)
-|+|.+++.|+-..|||-||-.-.+ .+|..-.|+..|-+
T Consensus 110 DtADiL~vkd~fyeiiDVKTrNisKkaq~PNIISA~kLAq~Ca~Mi 155 (257)
T 2gig_A 110 DTADILLVKDQFYELLDVKTRNISKSAFAPNIISAYKLAQTCAKMI 155 (257)
T ss_dssp CSCSEEEEETTEEEEEEEEEEETTSCCCCCEEEEHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8512788610003240011032344469974334999999999984
No 10
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=28.35 E-value=23 Score=13.87 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=17.8
Q ss_pred EEEEEEEEECCEEEEEEEECC
Q ss_conf 999999985997999981136
Q gi|254780124|r 114 GTADILIFNSTQWIIVDFKYG 134 (388)
Q Consensus 114 GtiD~I~~~dg~l~IiDyKtG 134 (388)
=|-|--++.++.+.|+|||-.
T Consensus 77 ~TPDNYi~~~~~LyIiDyKVS 97 (184)
T 2xi5_A 77 ITPDNYLYINNVLYIIDYKVS 97 (184)
T ss_dssp CCCSEEEEETTEEEEEEEEEC
T ss_pred CCCCCEEEECCEEEEEEEEEE
T ss_conf 588756998999999998887
No 11
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=23.93 E-value=28 Score=13.29 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=16.2
Q ss_pred CCCCCCEECCCCCC-CCCCC--CHHHHHHHH
Q ss_conf 84785232058887-86116--989999999
Q gi|254780124|r 289 DEIQGYQLVEGRKG-NRSFK--DINRAQELL 316 (388)
Q Consensus 289 ~~~~g~Klv~gr~~-~r~~~--d~~~~~~~l 316 (388)
+.+|||++++|+.+ .|+|+ |=..+..-+
T Consensus 19 ~~lp~W~~~~~~~~L~r~f~f~~f~~a~~F~ 49 (104)
T 2v6u_A 19 KTVPQWHLTDGHLSIKRKFQFSDFNEAWGFM 49 (104)
T ss_dssp TTSTTSEECGGGCCEEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEECCCCEEEEEEEECCHHHHHHHH
T ss_conf 6698987989905699999979999999999
No 12
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=23.00 E-value=27 Score=13.42 Aligned_cols=19 Identities=32% Similarity=0.971 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCC----CCCHHH
Q ss_conf 8866667257644----562013
Q gi|254780124|r 223 VNDDSCRFCRAKV----RCPALS 241 (388)
Q Consensus 223 ~~g~~CrfC~~k~----~Cra~a 241 (388)
...++|-||+-++ -||.+-
T Consensus 8 l~kdQCaYcke~GHW~rdCPkkp 30 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCHHHHHHHHCCCHHHHCCCCC
T ss_conf 66015366653460543186678
No 13
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=20.23 E-value=29 Score=13.18 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=11.2
Q ss_pred CCCCCCEECCCCCCC
Q ss_conf 847852320588878
Q gi|254780124|r 289 DEIQGYQLVEGRKGN 303 (388)
Q Consensus 289 ~~~~g~Klv~gr~~~ 303 (388)
..-||||||.|-.+|
T Consensus 31 msppgYkl~T~dr~n 45 (132)
T 1r5s_A 31 MSPPGYKLVTGDRNN 45 (132)
T ss_dssp CCCCCCCSCTTCCSS
T ss_pred CCCCCCEEEECCCCC
T ss_conf 788861434215677
Done!