Query gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 388
No_of_seqs 219 out of 911
Neff 7.5
Searched_HMMs 13730
Date Sun May 22 11:16:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780124.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w36b3 c.52.1.24 (B:899-1174) 98.6 4.6E-08 3.3E-12 69.5 5.8 49 111-159 163-225 (276)
2 d1ru0a_ d.74.1.1 (A:) DcoH-lik 50.0 6.2 0.00045 16.0 3.3 43 252-316 2-47 (100)
3 d1klra_ g.37.1.1 (A:) ZFY {Hum 36.3 5.2 0.00038 16.5 0.9 10 227-236 4-13 (30)
4 d1tx3a1 c.52.1.19 (A:2-258) Re 23.5 16 0.0012 13.3 1.6 22 114-135 110-131 (257)
5 d1a6bb_ g.40.1.1 (B:) Zinc fin 23.3 15 0.0011 13.5 1.4 19 223-241 8-30 (40)
6 d2yrka1 g.37.1.4 (A:8-55) Zinc 22.2 17 0.0012 13.1 1.5 16 223-238 4-19 (48)
7 d2ghfa2 g.37.1.1 (A:9-44) Zinc 20.1 13 0.00096 13.9 0.6 11 225-235 10-20 (36)
8 d1s14a_ d.122.1.2 (A:) Topoiso 18.2 21 0.0015 12.5 3.0 25 115-141 28-52 (168)
9 d1r5sa_ f.50.1.1 (A:) Gap junc 17.3 20 0.0014 12.7 0.9 16 288-303 30-45 (132)
10 d1dcpa_ d.74.1.1 (A:) Pterin-4 16.9 23 0.0017 12.3 3.4 25 292-316 18-45 (99)
No 1
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.56 E-value=4.6e-08 Score=69.46 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=36.6
Q ss_pred EEEEEEEEEEEECCEEEEEEEECCCCCCC-C-------------CCCCHHHHHHHHHHHHHCC
Q ss_conf 58999999998599799998113688767-4-------------4668799999999998438
Q gi|254780124|r 111 GATGTADILIFNSTQWIIVDFKYGAGVPV-K-------------AENNTQLMLYACGALHQYG 159 (388)
Q Consensus 111 ~~~GtiD~I~~~dg~l~IiDyKtGk~~~v-~-------------a~~n~QL~lYALgA~~~~~ 159 (388)
-+.|.||+|...+|.+.|+||||.+=-.. + .....|+.||++++.+.+.
T Consensus 163 ~l~G~IDlvf~~~g~~~llDYKTn~Lg~~~~~Y~~~~l~~~m~~~~Y~lQ~~lY~~AL~R~L~ 225 (276)
T d1w36b3 163 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLR 225 (276)
T ss_dssp EEEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 377788999999999999980056568873435899999999987688999999999999999
No 2
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.02 E-value=6.2 Score=16.03 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCC-CCCCC--CHHHHHHHH
Q ss_conf 005999999999954389999999999999999978984785232058887-86116--989999999
Q gi|254780124|r 252 PSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKG-NRSFK--DINRAQELL 316 (388)
Q Consensus 252 p~~l~~~e~~~~l~~~~~l~~w~~~v~~~a~~~~~~G~~~~g~Klv~gr~~-~r~~~--d~~~~~~~l 316 (388)
-+.||.+|+...|.... .+||+++.|+.+ .|.|+ |=..+..-+
T Consensus 2 a~~Lt~~ei~~~L~~L~----------------------~~gW~~~~~~~~L~r~f~f~~f~~a~~F~ 47 (100)
T d1ru0a_ 2 AQWLTAEERDQLIPGLK----------------------AAGWSELSERDAIYKEFSFKNFNQAFGFM 47 (100)
T ss_dssp CSBCCHHHHHHHHHHHH----------------------HTTCEECSSSSCEEEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCC----------------------CCCCEEECCCCEEEEEEEECCHHHHHHHH
T ss_conf 66399999999884588----------------------78989977998599999959999999999
No 3
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.26 E-value=5.2 Score=16.52 Aligned_cols=10 Identities=20% Similarity=0.966 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q ss_conf 6672576445
Q gi|254780124|r 227 SCRFCRAKVR 236 (388)
Q Consensus 227 ~CrfC~~k~~ 236 (388)
.|+||.||+.
T Consensus 4 ~cqyc~yrsa 13 (30)
T d1klra_ 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred CCCCCCCCCC
T ss_conf 0441300136
No 4
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII {Haemophilus influenzae [TaxId: 727]}
Probab=23.49 E-value=16 Score=13.27 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEEEEECCEEEEEEEECCC
Q ss_conf 9999999859979999811368
Q gi|254780124|r 114 GTADILIFNSTQWIIVDFKYGA 135 (388)
Q Consensus 114 GtiD~I~~~dg~l~IiDyKtGk 135 (388)
-|+|.+++.|.-..|||-||..
T Consensus 110 DtADiLvv~d~f~eiiDVKT~N 131 (257)
T d1tx3a1 110 DTADILLVKDQFYELLDVKTRN 131 (257)
T ss_dssp CSCSEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEHHHHHHHHHHHHCC
T ss_conf 8422687534556676243023
No 5
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=23.26 E-value=15 Score=13.47 Aligned_cols=19 Identities=32% Similarity=0.971 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCC----CCCHHH
Q ss_conf 8866667257644----562013
Q gi|254780124|r 223 VNDDSCRFCRAKV----RCPALS 241 (388)
Q Consensus 223 ~~g~~CrfC~~k~----~Cra~a 241 (388)
...++|-||+-++ .||.+-
T Consensus 8 L~kDQCAyCke~GHW~~dCPkkp 30 (40)
T d1a6bb_ 8 LDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCHHHHHHHHCCCHHHHCCCCC
T ss_conf 66016377753470543086677
No 6
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.25 E-value=17 Score=13.13 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 8866667257644562
Q gi|254780124|r 223 VNDDSCRFCRAKVRCP 238 (388)
Q Consensus 223 ~~g~~CrfC~~k~~Cr 238 (388)
.|.+-|.+|.+|-.-+
T Consensus 4 gp~~eC~lC~vKYs~~ 19 (48)
T d2yrka1 4 GTKPECTLCGVKYSAR 19 (48)
T ss_dssp CCCSCCTTTTCCCCSS
T ss_pred CCCCCCCCCCEEEEEE
T ss_conf 9834276115343010
No 7
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.12 E-value=13 Score=13.87 Aligned_cols=11 Identities=18% Similarity=0.827 Sum_probs=8.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 66667257644
Q gi|254780124|r 225 DDSCRFCRAKV 235 (388)
Q Consensus 225 g~~CrfC~~k~ 235 (388)
|=-|+||+|..
T Consensus 10 GyECKYC~f~T 20 (36)
T d2ghfa2 10 GYECKYCTFQT 20 (36)
T ss_dssp SEECSSCSCEE
T ss_pred CEEEEECCCCC
T ss_conf 70551237645
No 8
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=18.25 E-value=21 Score=12.53 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=17.0
Q ss_pred EEEEEEEECCEEEEEEEECCCCCCCCC
Q ss_conf 999999859979999811368876744
Q gi|254780124|r 115 TADILIFNSTQWIIVDFKYGAGVPVKA 141 (388)
Q Consensus 115 tiD~I~~~dg~l~IiDyKtGk~~~v~a 141 (388)
.|+..+..||.+.|.|. |+|.|+..
T Consensus 28 ~I~V~l~~D~si~V~D~--GRGIPvd~ 52 (168)
T d1s14a_ 28 RVDVILHADQSLEVIDD--GRGMPVDI 52 (168)
T ss_dssp EEEEEECTTSCEEEEEC--SSCCCCSB
T ss_pred EEEEEEECCCEEEEEEE--ECCCCEEE
T ss_conf 89999968984999998--45653566
No 9
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.26 E-value=20 Score=12.71 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=11.2
Q ss_pred CCCCCCCEECCCCCCC
Q ss_conf 9847852320588878
Q gi|254780124|r 288 GDEIQGYQLVEGRKGN 303 (388)
Q Consensus 288 G~~~~g~Klv~gr~~~ 303 (388)
-..-||||||.|-.++
T Consensus 30 pmsppgykl~t~~r~~ 45 (132)
T d1r5sa_ 30 PMSPPGYKLVTGDRNN 45 (132)
T ss_dssp CCCCCCCCSCTTCCSS
T ss_pred CCCCCCCEEEECCCCC
T ss_conf 7899871321035576
No 10
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.88 E-value=23 Score=12.32 Aligned_cols=25 Identities=40% Similarity=0.703 Sum_probs=13.2
Q ss_pred CCCEECCCCCCC-C--CCCCHHHHHHHH
Q ss_conf 852320588878-6--116989999999
Q gi|254780124|r 292 QGYQLVEGRKGN-R--SFKDINRAQELL 316 (388)
Q Consensus 292 ~g~Klv~gr~~~-r--~~~d~~~~~~~l 316 (388)
+||++++|+... | ++.|-..+..-+
T Consensus 18 ~GW~~~~~~~~L~r~f~F~~f~~a~~Fv 45 (99)
T d1dcpa_ 18 VGWNELEGRDAIFKQFHFKDFNRAFGFM 45 (99)
T ss_dssp HTCEECTTSSCEEEEEECSSHHHHHHHH
T ss_pred CCCEEECCCCEEEEEEEECCHHHHHHHH
T ss_conf 8989976987599999969999999999
Done!