RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780124|ref|YP_003064537.1| hypothetical protein
CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62]
         (388 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 44/116 (37%)

Query: 243 HVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKG 302
           H L  A      +TT+  +K      LIK+Y+ A          A             K 
Sbjct: 102 HALA-AKLLQENDTTLVKTK-----ELIKNYITARI-------MAKRPF--------DKK 140

Query: 303 NRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYK---EQKVSDEFWEELQEL 355
           + S         L  +V    A            QL      Q  +D+++EEL++L
Sbjct: 141 SNS--------ALFRAVGEGNA------------QLVAIFGGQGNTDDYFEELRDL 176


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 12/39 (30%)

Query: 209 SLKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLE 247
           +LK  +A SL+ Y   DDS          PAL+    +E
Sbjct: 21  ALKKLQA-SLKLYA--DDSA---------PALAIKATME 47


>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
           structural genomics/proteomics initiative, RSGI, NPPSFA;
           2.50A {Thermus thermophilus HB8}
          Length = 418

 Score = 32.9 bits (74), Expect = 0.12
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 333 KELEQLYKEQKVSDEFWEELQELITRGDGKP 363
           +ELE  Y+E K    F EEL   + +  G+P
Sbjct: 47  EELEAAYREAKKDPAFLEELDHYLRQFAGRP 77


>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
           biosynthesis, structural genomics; 2.20A {Mycobacterium
           tuberculosis} PDB: 2o2j_A
          Length = 422

 Score = 32.5 bits (73), Expect = 0.18
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 333 KELEQLYKEQKVSDEFWEELQELITRGDGKP 363
           +E+   Y++++VS +F ++L  L     G+P
Sbjct: 51  EEVTAAYQKERVSQDFLDDLDRLQANYAGRP 81


>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
           and 4 calmodulin...; transferase, calcium dependent
           protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
           PDB: 3hzt_A* 3dxn_A 3l19_A*
          Length = 494

 Score = 32.3 bits (73), Expect = 0.18
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 322 EEAFKRILK------TPKELEQLYKEQKVSDEFWEE-LQELITRGDGK 362
           E AF++  +      +  EL  ++    +  + W+E +  + +  DG 
Sbjct: 429 ESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGD 476


>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus}
           SCOP: c.79.1.1 PDB: 1wdw_B*
          Length = 388

 Score = 32.1 bits (72), Expect = 0.19
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 328 ILKTP-KELEQLYKEQKVSDEFWEELQELITRGDGKP 363
            L  P KELE+ YK  K  +EF  +L   +    G+P
Sbjct: 14  TLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRP 50


>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
           tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
           PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
           1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
           2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
           1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
          Length = 396

 Score = 32.0 bits (72), Expect = 0.22
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 328 ILKTP-KELEQLYKEQKVSDEFWEELQELITRGDGKP 363
           IL     +LE+ +   +   EF  +  +L+    G+P
Sbjct: 19  ILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRP 55


>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase;
           2.80A {Escherichia coli k-12}
          Length = 265

 Score = 31.9 bits (71), Expect = 0.25
 Identities = 27/224 (12%), Positives = 54/224 (24%), Gaps = 31/224 (13%)

Query: 7   LSASSSHRWLKCPIAPTLE--SKIPQTTSIYASEGTFAHNLL------------AHCLEQ 52
           +S S        P        + +  T +     GT  H  +            A    +
Sbjct: 13  ISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNR 72

Query: 53  GVDAETVSHQKLTFENDTRIVDTEMASSVSMVLAYVRT------FSGPFLSETEVPLEPF 106
             +A     +    E  +       A     +    ++            S        +
Sbjct: 73  RTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIY 132

Query: 107 TTEPGA----TGTADILIFNSTQWIIVDFKYGAGVPVKAENN----TQLMLYACGALHQY 158
             +P          D +I      + V           A  +     Q   Y+ G   Q+
Sbjct: 133 WEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQF 192

Query: 159 GDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKE 202
           G     P  + L           P+  +++  +  L   +E+  
Sbjct: 193 GVQ---PTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHR 233


>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
           kinase, transferase, calcium-bindin binding, EF hand,
           bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
           gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3ku2_A*
           3hx4_A*
          Length = 484

 Score = 30.6 bits (69), Expect = 0.60
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 322 EEAFKRILK------TPKELEQLYKEQKVSDEFWEE-LQELITRGDGK 362
           E AF+          +  EL  ++    V  E W+  L E+    DG+
Sbjct: 421 ERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGE 468


>3hx4_A Calmodulin-domain protein kinase 1; CDPKS, calcium, protist,
           structural genomics, structural genomics consortium,
           SGC, ATP-binding; HET: ANP; 1.95A {Toxoplasma gondii}
           PDB: 3i79_A
          Length = 508

 Score = 29.6 bits (66), Expect = 1.4
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 322 EEAFKRILK------TPKELEQLYKEQKVSDEFWEE-LQELITRGDGK 362
           E AF+          +  EL  ++    V  E W+  L E+    DG+
Sbjct: 445 ERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGE 492


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.1 bits (64), Expect = 1.8
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 18/68 (26%)

Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVI--------APRDIPTNKQTQK 378
           R+ + P+ + +  +EQ+      + LQEL    D    +        A +D+    Q Q 
Sbjct: 79  RLTQEPESIRKWREEQR------KRLQEL----DAASKVMEQEWREKAKKDLEEWNQRQS 128

Query: 379 SQLSEFEV 386
            Q+ + ++
Sbjct: 129 EQVEKNKI 136


>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function;
           NMR {Thermoplasma acidophilum}
          Length = 146

 Score = 28.4 bits (63), Expect = 3.3
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 282 FKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKE 341
           F+ +N  DE    Q + G   +  F D++    +    L  + + RIL   K+L +L+ E
Sbjct: 31  FQTINGLDE-SLVQALAGVTAS-DFPDLDIKYNIFLVDLYGQKYFRILFQSKKLSELHPE 88

Query: 342 --QKVSDEF 348
             +KV ++F
Sbjct: 89  ERKKVREKF 97


>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62,
           general transcription factor IIH polypeptide 1, nuclear
           protein; NMR {Homo sapiens} SCOP: a.240.1.1
          Length = 61

 Score = 27.9 bits (62), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)

Query: 323 EAFKRILKTPKELEQLYKEQKVS-----DEFWE 350
           E   R+L+    L QLYK+  VS     +EFW 
Sbjct: 17  EEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWA 49


>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
           alpha/beta hydrolase, META-cleavage pathway; 2.1A
           {Arthrobacter nicotinovorans} SCOP: c.69.1.41
          Length = 386

 Score = 27.9 bits (61), Expect = 3.9
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 9/47 (19%)

Query: 158 YGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERG 204
           Y D+ G          + R +  +  + W+  A++  ++A+     G
Sbjct: 40  YSDMVG---------ARDRPKEITWFDYWMSLANEYEQEAERKVALG 77


>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
           targeting, GTPase, GAP, longin domain, SEDL, transport
           protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
           PDB: 2go5_1
          Length = 185

 Score = 27.9 bits (62), Expect = 4.3
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 304 RSFKDINRAQELLTSV--LGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDG 361
           +    +    +L+  V  L  + ++  ++    L  L       ++F   L+E       
Sbjct: 80  QKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKI 139

Query: 362 KPVIAPRDIPTNKQTQKSQ 380
           +   AP  +   + ++K++
Sbjct: 140 R---APTTMKKFEDSEKAK 155


>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
           SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
          Length = 336

 Score = 27.8 bits (61), Expect = 4.5
 Identities = 36/234 (15%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 150 YACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALS 209
           YA G++ +          L   +             W +++++ LE++   KERGT+   
Sbjct: 102 YAFGSVGKEKFQIPPNAELKYELH--LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159

Query: 210 LKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISL 269
              K   +L  Y        +  +     A     L  A+        ++L    ++I  
Sbjct: 160 EG-KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218

Query: 270 IKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRIL 329
               ++   +            +G   +       +  D  +  +L  +   + A  ++ 
Sbjct: 219 CNKALELDSNNEKGLSR-----RGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLA 271

Query: 330 KTPKEL-EQLYKEQKVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLS 382
              + +  QL +E+K+    +E L E   +   +   +  D PT+ + ++ Q S
Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEEENKAKAEA--SSGDHPTDTEMKEEQKS 323


>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
           protein structure initiative, joint center for
           structural genomics; 1.90A {Thermotoga maritima} SCOP:
           d.127.1.1
          Length = 262

 Score = 27.5 bits (60), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
             +KTP E+E++ K  K       E++++I  G
Sbjct: 14  IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPG 46


>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
           cytoplasm, hydrolase, manganese, metal-binding,
           metalloprotease, protease; HET: P6G; 1.60A {Homo
           sapiens}
          Length = 623

 Score = 27.2 bits (60), Expect = 6.4
 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 17/150 (11%)

Query: 223 VNDDSCRFC--RAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDE 280
           +  ++        ++  P++  H+LL+   +      V     Y SI  +      C D 
Sbjct: 228 IGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQV---HPYKSI--LSELKALCADL 282

Query: 281 MFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYK 340
             +      +   Y + E    +           +           + +K   E E + +
Sbjct: 283 SPREKVWVSDKASYAVSETIPKDHRCCMPYTPICIA----------KAVKNSAESEGMRR 332

Query: 341 EQKVSDEFWEELQELITRGDGKPVIAPRDI 370
                     EL   + +   K  +     
Sbjct: 333 AHIKDAVALCELFNWLEKEVPKGGVTEISA 362


>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
           interactions, TPR, super-helix,; 2.45A {Homo sapiens}
           SCOP: a.118.8.1 PDB: 2bug_A
          Length = 166

 Score = 27.2 bits (59), Expect = 6.6
 Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 10/152 (6%)

Query: 190 ADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLEAT 249
           AD  L++A+E K +       K     +++ Y    +            +L+        
Sbjct: 6   ADGALKRAEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYL-----R 59

Query: 250 KDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGD-EIQGYQLVEGRKGNRSFKD 308
            +       + ++A   I L K Y+K         +  G             K     KD
Sbjct: 60  TECYGYALGDATRA---IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116

Query: 309 INRAQELLTSVLGEEAFKRILKTPKELEQLYK 340
                +    ++ ++AF+R +   +    +  
Sbjct: 117 AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148


>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding
           protein, holliday junction resolvase; 1.58A
           {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A
           2wj0_A
          Length = 139

 Score = 27.2 bits (60), Expect = 6.6
 Identities = 4/24 (16%), Positives = 9/24 (37%)

Query: 343 KVSDEFWEELQELITRGDGKPVIA 366
            +S +  E+L         +  +A
Sbjct: 64  YLSADEVEQLVTFARGFGAEAYVA 87


>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, structural genomics,
           center for structural genomics of infectious diseases;
           HET: SO4; 2.89A {Bacillus anthracis}
          Length = 427

 Score = 27.0 bits (59), Expect = 7.0
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
           R+ KT +E+E + +   V+ +    + +     
Sbjct: 169 RVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKAD 201


>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
           structural genomics, niaid, center for structural
           genomics infectious diseases; 1.95A {Yersinia pestis}
          Length = 346

 Score = 26.5 bits (58), Expect = 9.2
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 14/55 (25%)

Query: 116 ADILIFNSTQWIIVDFKYGAGVPVKAENNTQLML---YACGALHQYGDIFGRPEA 167
           ADIL++ + Q           VPV  +    L L    A    + YGDIF  PE 
Sbjct: 146 ADILLYQTNQ-----------VPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEP 189


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,151,533
Number of extensions: 140581
Number of successful extensions: 567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 29
Length of query: 388
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 294
Effective length of database: 3,414,294
Effective search space: 1003802436
Effective search space used: 1003802436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)