RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] (388 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 5e-05 Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 44/116 (37%) Query: 243 HVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKG 302 H L A +TT+ +K LIK+Y+ A A K Sbjct: 102 HALA-AKLLQENDTTLVKTK-----ELIKNYITARI-------MAKRPF--------DKK 140 Query: 303 NRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYK---EQKVSDEFWEELQEL 355 + S L +V A QL Q +D+++EEL++L Sbjct: 141 SNS--------ALFRAVGEGNA------------QLVAIFGGQGNTDDYFEELRDL 176 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 38.4 bits (88), Expect = 0.002 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 12/39 (30%) Query: 209 SLKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLE 247 +LK +A SL+ Y DDS PAL+ +E Sbjct: 21 ALKKLQA-SLKLYA--DDSA---------PALAIKATME 47 >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} Length = 418 Score = 32.9 bits (74), Expect = 0.12 Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 333 KELEQLYKEQKVSDEFWEELQELITRGDGKP 363 +ELE Y+E K F EEL + + G+P Sbjct: 47 EELEAAYREAKKDPAFLEELDHYLRQFAGRP 77 >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422 Score = 32.5 bits (73), Expect = 0.18 Identities = 9/31 (29%), Positives = 19/31 (61%) Query: 333 KELEQLYKEQKVSDEFWEELQELITRGDGKP 363 +E+ Y++++VS +F ++L L G+P Sbjct: 51 EEVTAAYQKERVSQDFLDDLDRLQANYAGRP 81 >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494 Score = 32.3 bits (73), Expect = 0.18 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 7/48 (14%) Query: 322 EEAFKRILK------TPKELEQLYKEQKVSDEFWEE-LQELITRGDGK 362 E AF++ + + EL ++ + + W+E + + + DG Sbjct: 429 ESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGD 476 >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388 Score = 32.1 bits (72), Expect = 0.19 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 328 ILKTP-KELEQLYKEQKVSDEFWEELQELITRGDGKP 363 L P KELE+ YK K +EF +L + G+P Sbjct: 14 TLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRP 50 >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396 Score = 32.0 bits (72), Expect = 0.22 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 328 ILKTP-KELEQLYKEQKVSDEFWEELQELITRGDGKP 363 IL +LE+ + + EF + +L+ G+P Sbjct: 19 ILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRP 55 >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} Length = 265 Score = 31.9 bits (71), Expect = 0.25 Identities = 27/224 (12%), Positives = 54/224 (24%), Gaps = 31/224 (13%) Query: 7 LSASSSHRWLKCPIAPTLE--SKIPQTTSIYASEGTFAHNLL------------AHCLEQ 52 +S S P + + T + GT H + A + Sbjct: 13 ISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNR 72 Query: 53 GVDAETVSHQKLTFENDTRIVDTEMASSVSMVLAYVRT------FSGPFLSETEVPLEPF 106 +A + E + A + ++ S + Sbjct: 73 RTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIY 132 Query: 107 TTEPGA----TGTADILIFNSTQWIIVDFKYGAGVPVKAENN----TQLMLYACGALHQY 158 +P D +I + V A + Q Y+ G Q+ Sbjct: 133 WEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQF 192 Query: 159 GDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKE 202 G P + L P+ +++ + L +E+ Sbjct: 193 GVQ---PTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHR 233 >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3ku2_A* 3hx4_A* Length = 484 Score = 30.6 bits (69), Expect = 0.60 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%) Query: 322 EEAFKRILK------TPKELEQLYKEQKVSDEFWEE-LQELITRGDGK 362 E AF+ + EL ++ V E W+ L E+ DG+ Sbjct: 421 ERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGE 468 >3hx4_A Calmodulin-domain protein kinase 1; CDPKS, calcium, protist, structural genomics, structural genomics consortium, SGC, ATP-binding; HET: ANP; 1.95A {Toxoplasma gondii} PDB: 3i79_A Length = 508 Score = 29.6 bits (66), Expect = 1.4 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%) Query: 322 EEAFKRILK------TPKELEQLYKEQKVSDEFWEE-LQELITRGDGK 362 E AF+ + EL ++ V E W+ L E+ DG+ Sbjct: 445 ERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGE 492 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 29.1 bits (64), Expect = 1.8 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 18/68 (26%) Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVI--------APRDIPTNKQTQK 378 R+ + P+ + + +EQ+ + LQEL D + A +D+ Q Q Sbjct: 79 RLTQEPESIRKWREEQR------KRLQEL----DAASKVMEQEWREKAKKDLEEWNQRQS 128 Query: 379 SQLSEFEV 386 Q+ + ++ Sbjct: 129 EQVEKNKI 136 >2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function; NMR {Thermoplasma acidophilum} Length = 146 Score = 28.4 bits (63), Expect = 3.3 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 282 FKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKE 341 F+ +N DE Q + G + F D++ + L + + RIL K+L +L+ E Sbjct: 31 FQTINGLDE-SLVQALAGVTAS-DFPDLDIKYNIFLVDLYGQKYFRILFQSKKLSELHPE 88 Query: 342 --QKVSDEF 348 +KV ++F Sbjct: 89 ERKKVREKF 97 >2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1 Length = 61 Score = 27.9 bits (62), Expect = 3.8 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Query: 323 EAFKRILKTPKELEQLYKEQKVS-----DEFWE 350 E R+L+ L QLYK+ VS +EFW Sbjct: 17 EEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWA 49 >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 Score = 27.9 bits (61), Expect = 3.9 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 9/47 (19%) Query: 158 YGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERG 204 Y D+ G + R + + + W+ A++ ++A+ G Sbjct: 40 YSDMVG---------ARDRPKEITWFDYWMSLANEYEQEAERKVALG 77 >2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Length = 185 Score = 27.9 bits (62), Expect = 4.3 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 5/79 (6%) Query: 304 RSFKDINRAQELLTSV--LGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDG 361 + + +L+ V L + ++ ++ L L ++F L+E Sbjct: 80 QKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKI 139 Query: 362 KPVIAPRDIPTNKQTQKSQ 380 + AP + + ++K++ Sbjct: 140 R---APTTMKKFEDSEKAK 155 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 Score = 27.8 bits (61), Expect = 4.5 Identities = 36/234 (15%), Positives = 81/234 (34%), Gaps = 13/234 (5%) Query: 150 YACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALS 209 YA G++ + L + W +++++ LE++ KERGT+ Sbjct: 102 YAFGSVGKEKFQIPPNAELKYELH--LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 Query: 210 LKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISL 269 K +L Y + + A L A+ ++L ++I Sbjct: 160 EG-KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 Query: 270 IKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRIL 329 ++ + +G + + D + +L + + A ++ Sbjct: 219 CNKALELDSNNEKGLSR-----RGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLA 271 Query: 330 KTPKEL-EQLYKEQKVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLS 382 + + QL +E+K+ +E L E + + + D PT+ + ++ Q S Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEEENKAKAEA--SSGDHPTDTEMKEEQKS 323 >1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1 Length = 262 Score = 27.5 bits (60), Expect = 4.9 Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359 +KTP E+E++ K K E++++I G Sbjct: 14 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPG 46 >3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens} Length = 623 Score = 27.2 bits (60), Expect = 6.4 Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 17/150 (11%) Query: 223 VNDDSCRFC--RAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDE 280 + ++ ++ P++ H+LL+ + V Y SI + C D Sbjct: 228 IGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQV---HPYKSI--LSELKALCADL 282 Query: 281 MFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYK 340 + + Y + E + + + +K E E + + Sbjct: 283 SPREKVWVSDKASYAVSETIPKDHRCCMPYTPICIA----------KAVKNSAESEGMRR 332 Query: 341 EQKVSDEFWEELQELITRGDGKPVIAPRDI 370 EL + + K + Sbjct: 333 AHIKDAVALCELFNWLEKEVPKGGVTEISA 362 >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 Score = 27.2 bits (59), Expect = 6.6 Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 10/152 (6%) Query: 190 ADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPALSRHVLLEAT 249 AD L++A+E K + K +++ Y + +L+ Sbjct: 6 ADGALKRAEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYL-----R 59 Query: 250 KDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGD-EIQGYQLVEGRKGNRSFKD 308 + + ++A I L K Y+K + G K KD Sbjct: 60 TECYGYALGDATRA---IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116 Query: 309 INRAQELLTSVLGEEAFKRILKTPKELEQLYK 340 + ++ ++AF+R + + + Sbjct: 117 AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 >2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A Length = 139 Score = 27.2 bits (60), Expect = 6.6 Identities = 4/24 (16%), Positives = 9/24 (37%) Query: 343 KVSDEFWEELQELITRGDGKPVIA 366 +S + E+L + +A Sbjct: 64 YLSADEVEQLVTFARGFGAEAYVA 87 >3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, structural genomics, center for structural genomics of infectious diseases; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 Score = 27.0 bits (59), Expect = 7.0 Identities = 6/33 (18%), Positives = 15/33 (45%) Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359 R+ KT +E+E + + V+ + + + Sbjct: 169 RVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKAD 201 >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Score = 26.5 bits (58), Expect = 9.2 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 14/55 (25%) Query: 116 ADILIFNSTQWIIVDFKYGAGVPVKAENNTQLML---YACGALHQYGDIFGRPEA 167 ADIL++ + Q VPV + L L A + YGDIF PE Sbjct: 146 ADILLYQTNQ-----------VPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEP 189 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.131 0.378 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,151,533 Number of extensions: 140581 Number of successful extensions: 567 Number of sequences better than 10.0: 1 Number of HSP's gapped: 565 Number of HSP's successfully gapped: 29 Length of query: 388 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 294 Effective length of database: 3,414,294 Effective search space: 1003802436 Effective search space used: 1003802436 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.3 bits)