Query gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 262
No_of_seqs 191 out of 1100
Neff 7.2
Searched_HMMs 23785
Date Sun May 22 09:57:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780125.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b73_A PHIH1 repressor-like pr 93.7 0.13 5.3E-06 29.3 5.7 54 170-223 21-77 (111)
2 2h09_A Transcriptional regulat 93.1 0.13 5.4E-06 29.3 5.0 63 162-226 42-105 (155)
3 1on2_A Transcriptional regulat 93.0 0.14 5.9E-06 29.0 5.1 56 171-226 17-73 (142)
4 1fx7_A Iron-dependent represso 92.4 0.28 1.2E-05 27.0 5.9 45 26-76 25-71 (230)
5 3hrs_A Metalloregulator SCAR; 92.2 0.36 1.5E-05 26.2 6.3 47 25-77 20-68 (214)
6 2x4h_A Hypothetical protein SS 91.8 0.36 1.5E-05 26.2 6.0 55 171-226 26-81 (139)
7 2qq9_A Diphtheria toxin repres 91.1 0.47 2E-05 25.4 5.9 43 26-74 25-69 (226)
8 1xmk_A Double-stranded RNA-spe 84.7 1.8 7.6E-05 21.4 5.6 46 175-222 24-75 (79)
9 3cta_A Riboflavin kinase; stru 83.5 1.7 7E-05 21.6 4.9 51 22-75 24-76 (230)
10 2o0y_A Transcriptional regulat 83.4 2.1 8.9E-05 20.9 6.5 65 24-95 37-108 (260)
11 1mkm_A ICLR transcriptional re 82.9 2.2 9.3E-05 20.8 6.5 49 25-80 23-73 (249)
12 3nrv_A Putative transcriptiona 82.7 2.1 9E-05 20.9 5.3 60 168-227 46-112 (148)
13 3hsr_A HTH-type transcriptiona 82.7 2.3 9.5E-05 20.7 7.4 71 153-226 30-107 (140)
14 2nnn_A Probable transcriptiona 82.0 1.7 7.3E-05 21.5 4.6 66 161-226 37-109 (140)
15 2nyx_A Probable transcriptiona 78.5 3 0.00013 19.9 4.8 62 165-226 48-116 (168)
16 2fbk_A Transcriptional regulat 77.5 3.3 0.00014 19.6 6.7 83 144-226 54-143 (181)
17 1p4x_A Staphylococcal accessor 75.7 3.7 0.00015 19.3 15.5 171 26-226 51-231 (250)
18 2a61_A Transcriptional regulat 75.4 3.7 0.00016 19.3 4.6 55 172-226 43-104 (145)
19 2pex_A Transcriptional regulat 74.2 4 0.00017 19.0 5.5 58 168-225 53-117 (153)
20 2fa5_A Transcriptional regulat 72.9 4.3 0.00018 18.8 5.4 63 165-227 52-121 (162)
21 1z91_A Organic hydroperoxide r 71.1 3.9 0.00016 19.1 3.9 54 171-224 49-109 (147)
22 1y0u_A Arsenical resistance op 69.7 3 0.00013 19.9 3.1 46 177-223 44-90 (96)
23 2wte_A CSA3; antiviral protein 69.0 5.2 0.00022 18.3 5.2 55 171-225 161-217 (244)
24 2ia2_A Putative transcriptiona 67.5 5.5 0.00023 18.1 5.0 30 24-53 35-66 (265)
25 3cdh_A Transcriptional regulat 66.7 5.7 0.00024 17.9 8.6 75 149-226 33-114 (155)
26 2fbi_A Probable transcriptiona 65.6 6 0.00025 17.8 4.9 74 150-226 27-107 (142)
27 3bro_A Transcriptional regulat 65.5 6 0.00025 17.8 8.1 77 149-226 24-107 (141)
28 3ech_A MEXR, multidrug resista 65.1 6.1 0.00026 17.7 5.3 63 164-226 39-108 (142)
29 2eth_A Transcriptional regulat 64.9 6.2 0.00026 17.7 5.2 57 170-226 52-115 (154)
30 2qww_A Transcriptional regulat 63.4 6.6 0.00028 17.5 5.7 71 153-226 35-114 (154)
31 1s3j_A YUSO protein; structura 63.2 6.6 0.00028 17.5 7.8 66 161-226 36-108 (155)
32 2fxa_A Protease production reg 62.7 6.8 0.00028 17.5 8.5 70 155-227 44-120 (207)
33 2g7u_A Transcriptional regulat 61.5 7.1 0.0003 17.3 5.5 70 23-103 27-98 (257)
34 1qbj_A Protein (double-strande 61.3 7.2 0.0003 17.3 6.2 49 171-222 22-76 (81)
35 1g4d_A Repressor protein C; pr 61.1 7 0.0003 17.3 3.6 37 174-210 2-38 (69)
36 2gxg_A 146AA long hypothetical 60.6 7.4 0.00031 17.2 8.0 70 154-227 32-108 (146)
37 2bv6_A MGRA, HTH-type transcri 60.3 7.5 0.00031 17.2 6.6 58 169-226 44-108 (142)
38 1r1t_A Transcriptional repress 59.8 7.6 0.00032 17.1 4.1 44 174-217 57-101 (122)
39 3boq_A Transcriptional regulat 59.6 7.6 0.00032 17.1 9.5 73 153-227 41-120 (160)
40 1tns_A MU-transposase; DNA-bin 58.3 5.5 0.00023 18.1 2.6 36 174-209 2-37 (76)
41 3neu_A LIN1836 protein; struct 58.0 8.1 0.00034 16.9 4.7 44 174-217 34-79 (125)
42 3eco_A MEPR; mutlidrug efflux 55.8 8.8 0.00037 16.7 8.0 71 155-226 27-104 (139)
43 3k0l_A Repressor protein; heli 55.6 8.9 0.00037 16.6 8.3 71 153-226 40-117 (162)
44 3e6m_A MARR family transcripti 55.6 8.9 0.00037 16.6 7.0 72 153-227 47-125 (161)
45 1u2w_A CADC repressor, cadmium 54.0 9.4 0.0004 16.5 4.4 47 171-217 51-98 (122)
46 3bpv_A Transcriptional regulat 53.1 9.7 0.00041 16.4 7.7 66 161-226 28-100 (138)
47 3deu_A Transcriptional regulat 52.9 9.8 0.00041 16.4 5.0 56 171-226 63-125 (166)
48 2fbh_A Transcriptional regulat 52.7 9.8 0.00041 16.3 5.8 56 171-226 47-109 (146)
49 3f6v_A Possible transcriptiona 52.4 8.4 0.00035 16.8 2.8 43 174-216 69-112 (151)
50 3f6o_A Probable transcriptiona 50.7 9.5 0.0004 16.4 2.8 43 175-217 30-73 (118)
51 1jgs_A Multiple antibiotic res 49.9 11 0.00046 16.1 5.2 57 170-226 42-105 (138)
52 2zkz_A Transcriptional repress 49.5 11 0.00045 16.1 2.9 41 175-217 40-82 (99)
53 3fxq_A LYSR type regulator of 49.4 11 0.00046 16.0 4.3 44 27-74 18-63 (305)
54 3bwg_A Uncharacterized HTH-typ 48.8 11 0.00047 15.9 3.8 29 22-50 26-56 (239)
55 2hr3_A Probable transcriptiona 48.7 11 0.00048 15.9 7.8 56 171-226 45-107 (147)
56 3eyi_A Z-DNA-binding protein 1 48.4 11 0.00048 15.9 3.4 47 171-218 19-69 (72)
57 2oqg_A Possible transcriptiona 46.7 12 0.00051 15.7 3.7 43 175-217 33-76 (114)
58 3bja_A Transcriptional regulat 46.4 12 0.00051 15.7 9.3 58 169-226 40-104 (139)
59 3jth_A Transcription activator 46.1 12 0.00052 15.7 4.3 44 174-217 34-78 (98)
60 1ku9_A Hypothetical protein MJ 46.1 12 0.00052 15.7 6.8 63 144-208 11-74 (152)
61 3fm5_A Transcriptional regulat 45.6 13 0.00053 15.6 6.2 57 170-226 48-111 (150)
62 3kp7_A Transcriptional regulat 44.4 13 0.00055 15.5 9.6 74 149-226 28-110 (151)
63 3oop_A LIN2960 protein; protei 44.3 13 0.00055 15.5 8.6 56 171-226 46-108 (143)
64 1r1u_A CZRA, repressor protein 44.3 13 0.00055 15.5 3.9 43 175-217 38-81 (106)
65 3by6_A Predicted transcription 44.2 13 0.00056 15.5 4.7 42 175-216 33-76 (126)
66 3g3z_A NMB1585, transcriptiona 43.5 14 0.00057 15.4 8.0 57 170-226 39-102 (145)
67 2kfs_A Conserved hypothetical 42.8 14 0.00058 15.3 3.7 26 22-49 28-53 (148)
68 3bdd_A Regulatory protein MARR 42.2 14 0.00059 15.3 6.9 51 172-222 41-98 (142)
69 3edp_A LIN2111 protein; APC883 42.0 14 0.0006 15.2 3.9 33 22-54 30-64 (236)
70 3cuo_A Uncharacterized HTH-typ 41.8 14 0.0006 15.2 5.1 47 171-217 33-80 (99)
71 2hzt_A Putative HTH-type trans 41.4 15 0.00061 15.2 5.3 53 174-227 25-86 (107)
72 1sfx_A Conserved hypothetical 41.2 15 0.00061 15.2 4.9 58 149-209 10-68 (109)
73 1fy7_A ESA1 histone acetyltran 39.1 16 0.00066 14.9 4.3 70 173-247 207-278 (278)
74 2p8t_A Hypothetical protein PH 38.3 16 0.00068 14.9 4.7 51 177-228 31-82 (200)
75 1j5y_A Transcriptional regulat 37.2 17 0.00071 14.7 3.0 14 25-38 36-49 (187)
76 3cjn_A Transcriptional regulat 36.5 17 0.00072 14.7 7.4 70 154-226 47-123 (162)
77 2kko_A Possible transcriptiona 36.0 18 0.00074 14.6 3.3 44 174-217 36-80 (108)
78 3jw4_A Transcriptional regulat 35.8 18 0.00074 14.6 6.2 53 174-226 55-114 (148)
79 2frh_A SARA, staphylococcal ac 35.2 18 0.00076 14.5 4.5 55 172-226 49-110 (127)
80 2jsc_A Transcriptional regulat 35.0 15 0.00063 15.1 1.8 41 175-217 33-76 (118)
81 2ek5_A Predicted transcription 33.7 19 0.0008 14.4 4.7 30 22-51 25-56 (129)
82 1qgp_A Protein (double strande 33.4 19 0.00081 14.3 5.9 44 171-217 26-75 (77)
83 3f3x_A Transcriptional regulat 32.6 20 0.00083 14.3 8.3 51 176-226 50-107 (144)
84 2ra5_A Putative transcriptiona 31.0 11 0.00048 15.9 0.7 33 21-53 36-70 (247)
85 1nd9_A Translation initiation 30.8 21 0.00089 14.1 2.2 38 176-218 2-39 (49)
86 1z7u_A Hypothetical protein EF 30.4 21 0.0009 14.0 5.5 54 174-228 33-95 (112)
87 2fsw_A PG_0823 protein; alpha- 30.2 22 0.00091 14.0 5.9 54 173-227 35-97 (107)
88 3hhg_A Transcriptional regulat 29.8 22 0.00092 14.0 4.3 44 28-75 20-65 (306)
89 3e7l_A Transcriptional regulat 29.7 22 0.00093 13.9 3.4 28 177-206 33-60 (63)
90 1v4r_A Transcriptional repress 29.2 19 0.00082 14.3 1.6 45 173-217 31-77 (102)
91 2wv0_A YVOA, HTH-type transcri 29.0 23 0.00095 13.9 4.3 33 21-53 30-64 (243)
92 2rdp_A Putative transcriptiona 28.4 23 0.00097 13.8 9.0 57 170-226 50-113 (150)
93 2d1h_A ST1889, 109AA long hypo 28.3 23 0.00098 13.8 5.0 39 170-208 30-69 (109)
94 3nqo_A MARR-family transcripti 28.2 23 0.00098 13.8 5.1 54 173-226 54-114 (189)
95 1u78_A TC3 transposase, transp 28.2 23 0.00098 13.8 3.9 47 176-222 77-124 (141)
96 3dp7_A SAM-dependent methyltra 27.6 24 0.001 13.7 5.4 13 26-38 51-63 (363)
97 3f8m_A GNTR-family protein tra 27.2 24 0.001 13.6 3.4 32 22-53 33-66 (248)
98 3df8_A Possible HXLR family tr 25.9 26 0.0011 13.5 6.5 53 175-228 41-98 (111)
99 3mcz_A O-methyltransferase; ad 25.5 26 0.0011 13.4 5.6 15 27-42 58-72 (352)
100 3bj6_A Transcriptional regulat 25.0 27 0.0011 13.4 10.0 58 170-227 48-112 (152)
101 1r7j_A Conserved hypothetical 24.8 27 0.0011 13.4 5.2 48 177-227 21-71 (95)
102 2r3s_A Uncharacterized protein 24.5 27 0.0011 13.3 5.9 16 26-42 40-55 (335)
103 1lj9_A Transcriptional regulat 23.8 28 0.0012 13.2 5.5 53 174-226 41-100 (144)
104 3lwf_A LIN1550 protein, putati 23.8 28 0.0012 13.2 5.6 46 173-218 41-89 (159)
105 2obp_A Putative DNA-binding pr 23.4 28 0.0012 13.2 6.2 59 172-230 32-95 (96)
106 1wa9_A Period circadian protei 23.1 29 0.0012 13.1 2.3 29 10-39 7-35 (368)
107 2f2e_A PA1607; transcription f 23.1 29 0.0012 13.1 6.5 53 173-227 34-94 (146)
108 1ixc_A CBNR, LYSR-type regulat 22.4 30 0.0012 13.1 2.9 65 28-103 18-84 (294)
109 1ub9_A Hypothetical protein PH 22.3 30 0.0013 13.0 8.8 57 169-225 23-86 (100)
110 3fzv_A Probable transcriptiona 22.1 30 0.0013 13.0 4.3 26 28-53 21-48 (306)
111 3ic7_A Putative transcriptiona 21.7 31 0.0013 13.0 2.3 44 178-221 37-81 (126)
112 3dbw_A Transcriptional regulat 20.9 32 0.0013 12.9 4.1 50 61-110 36-85 (226)
No 1
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.66 E-value=0.13 Score=29.30 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf 4155873239999997389988899999---99978976853799443657897543
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVSKVSGGYRPTPKGEERG 223 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262)
++...+..+...||+.+++..|...+.. -|.+.|+..+..++.+.+|.+|+.|-
T Consensus 21 ~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve~~g~G~Y~iT~~G~~yL 77 (111)
T 3b73_A 21 IIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYL 77 (111)
T ss_dssp HHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH
T ss_conf 999849999999999868884799999999999878795666870079896689999
No 2
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.14 E-value=0.13 Score=29.26 Aligned_cols=63 Identities=21% Similarity=0.075 Sum_probs=46.4
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf 01346665415587323999999738998-889999999978976853799443657897543553
Q gi|254780125|r 162 AMDIKHLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262)
Q Consensus 162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262)
-++.|.. ....+...+++||+.||+.. |...+-+.|.+.|+......+.+.||++|...+...
T Consensus 42 Le~Iy~L--~~~~~~vr~~dIA~~L~vs~~sVs~~l~~L~~~GlI~~~~~~~i~LT~~G~~~A~~i 105 (155)
T 2h09_A 42 VELISDL--IREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQES 105 (155)
T ss_dssp HHHHHHH--HHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHH
T ss_pred HHHHHHH--HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
T ss_conf 9999999--853897709999999698978999999999778898754998755898599999999
No 3
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=93.00 E-value=0.14 Score=29.01 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=41.6
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf 155873239999997389988-89999999978976853799443657897543553
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262)
....+..+.++||+.||+..+ ....-+.|.+.|+..+...+.+.||++|...+...
T Consensus 17 ~~~~~~v~~~dlA~~L~vs~~sv~~~lk~L~~~GlI~~~~~~~i~LT~~G~~~A~~l 73 (142)
T 1on2_A 17 IEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp HHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH
T ss_conf 853798869999999698878999999999857984406998667778899999999
No 4
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=92.37 E-value=0.28 Score=26.96 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=29.1
Q ss_pred EEHHHHHHHHCCCCHH--HHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHH
Q ss_conf 6799999882896889--99998456743288722799831068971877999
Q gi|254780125|r 26 FVAKDVATALGYENSN--EAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYR 76 (262)
Q Consensus 26 F~a~dva~~LGy~~~~--~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~ 76 (262)
....|+|+.|+.+.++ .+++++.+.....+.- - ....+++.|.-.
T Consensus 25 ~~~~~lA~~L~vs~~sv~~~l~~L~~~Glv~~~~--~----~~i~LT~~G~~~ 71 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG--D----RHLELTEKGRAL 71 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT--T----SCEEECHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--C----CCEEECHHHHHH
T ss_conf 6199999987889289999999998888989818--9----888988899999
No 5
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.21 E-value=0.36 Score=26.19 Aligned_cols=47 Identities=6% Similarity=0.002 Sum_probs=30.4
Q ss_pred EEEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHHH
Q ss_conf 6679999988289688--9999984567432887227998310689718779999
Q gi|254780125|r 25 WFVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYRL 77 (262)
Q Consensus 25 wF~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~L 77 (262)
....+|+|+.|+.+.+ ..+++++.+....... ......+++.|....
T Consensus 20 ~v~~~~iA~~l~vs~~sv~~~l~rL~~~g~i~~~------~~~~i~LT~~G~~~A 68 (214)
T 3hrs_A 20 KITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD------KKAGYLLTDLGLKLV 68 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTTEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC------CCCCEEECHHHHHHH
T ss_conf 7789999998689957999999999978998973------897776578799999
No 6
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=91.83 E-value=0.36 Score=26.17 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=42.0
Q ss_pred HCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf 1558732399999973899-8889999999978976853799443657897543553
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262)
....+...+++||+.|++. -|...+-+.|.+.|+..+. .+...||++|...+..+
T Consensus 26 ~~~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~~-~~gi~LT~~G~~~A~~i 81 (139)
T 2x4h_A 26 NDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK-EDGVWITNNGTRSINYL 81 (139)
T ss_dssp HTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE-CCCCEECHHHHHHHHHH
T ss_conf 975998669999999688907999999999988995450-47715788899999999
No 7
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=91.12 E-value=0.47 Score=25.40 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=27.5
Q ss_pred EEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHH
Q ss_conf 679999988289688--9999984567432887227998310689718779
Q gi|254780125|r 26 FVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDV 74 (262)
Q Consensus 26 F~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gl 74 (262)
....|+|+.||.+.+ ..+++++.+.....+.- .....+++.|.
T Consensus 25 v~~~~iA~~L~vs~~svt~~l~~L~~~Gli~~~~------~~~v~LT~~G~ 69 (226)
T 2qq9_A 25 PLRARIAERLEQSGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGR 69 (226)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC------CCCEEECHHHH
T ss_conf 5199999996899179999999999889989728------97879898899
No 8
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.68 E-value=1.8 Score=21.37 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCCC---EEECHHHHHH
Q ss_conf 7323999999738998889999999---9789768537994---4365789754
Q gi|254780125|r 175 EYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSGG---YRPTPKGEER 222 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~~---W~lt~kg~~~ 222 (262)
+.-++-+|||.||+. +++.+|+.| .+.|-.++ ++.. |.+|.+..+.
T Consensus 24 ~~stAl~iAk~LGl~-kakeVN~~LY~L~k~g~v~k-~~~tPP~W~l~~~~~Er 75 (79)
T 1xmk_A 24 SDSSALNLAKNIGLT-KARDINAVLIDMERQGDVYR-QGTTPPIWHLTDKKRER 75 (79)
T ss_dssp CCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEE-ECSSSCEEEECHHHHTT
T ss_pred CCCHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCEEC-CCCCCCCEEEHHHHHHH
T ss_conf 995399999992997-26777499999997678122-79989963410737878
No 9
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=83.45 E-value=1.7 Score=21.62 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=25.5
Q ss_pred CEEEEEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHH
Q ss_conf 9086679999988289688--99999845674328872279983106897187799
Q gi|254780125|r 22 QNIWFVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVY 75 (262)
Q Consensus 22 ge~wF~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly 75 (262)
+.......++|+.||.+.+ ++.++++.+........ .+......+++.|.-
T Consensus 24 ~~~~ls~~eLa~~l~is~~tvsr~l~~Le~~GlI~R~~---d~R~~~v~LTekG~~ 76 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV---TKRGQILNITEKGLD 76 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---CCCEEEEEECHHHHH
T ss_conf 79985899999998878889999999999889879811---598447898887999
No 10
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=83.38 E-value=2.1 Score=20.90 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=34.0
Q ss_pred EEEEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHH-----CCCHHHHHHHHHHHH
Q ss_conf 86679999988289688--9999984567432887227998310689718779999985-----799657999998889
Q gi|254780125|r 24 IWFVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYRLLVK-----STLPSAQKFERWVFE 95 (262)
Q Consensus 24 ~wF~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~Li~~-----s~~p~A~~F~~Wv~~ 95 (262)
.-..+.|+|+.+|+..+ ++.++.++....... +..| .|.-=+.+++|... .-...+.++-+++.+
T Consensus 37 ~~~~l~eia~~lgl~~sT~~RlL~tL~~~G~l~~--~~~g-----~Y~lG~~~~~l~~~~~~~~~~~~~a~~~l~~L~~ 108 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS--RADG-----SYSLGPEMLRWVRLAGRTWAPPEEVVDIMRQLSA 108 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE--CTTS-----CEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEE--ECCC-----CEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9989999999979199999999999997887898--0554-----2653789999887640001489999999999998
No 11
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=82.87 E-value=2.2 Score=20.77 Aligned_cols=49 Identities=8% Similarity=-0.079 Sum_probs=28.9
Q ss_pred EEEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 6679999988289688--9999984567432887227998310689718779999985
Q gi|254780125|r 25 WFVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYRLLVK 80 (262)
Q Consensus 25 wF~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~Li~~ 80 (262)
-....|+|+.+|+..+ ++.++.+++...... +..+ .|.-=+.++.|...
T Consensus 23 ~~tl~eia~~lglpksT~~Rll~tL~~~G~l~~--~~~~-----~Y~lG~~~~~l~~~ 73 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR--KKDK-----RYVPGYKLIEYGSF 73 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--CTTS-----CEEECTHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--CCCC-----CHHHHHHHHHHHHH
T ss_conf 989999999879199999999999997798653--2553-----20132465444676
No 12
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=82.73 E-value=2.1 Score=20.88 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=41.2
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHHC
Q ss_conf 654155873239999997389988-8999999997897685379------94436578975435530
Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKMC 227 (262)
Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~~ 227 (262)
...+...+-+++++||+.+++..+ .-.+-+.|.+.|+..|... ....+|++|.+.-....
T Consensus 46 L~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
T 3nrv_A 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp HHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 9999977997999999998969989999999985079364247998888300433988999999999
No 13
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=82.69 E-value=2.3 Score=20.72 Aligned_cols=71 Identities=24% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHH
Q ss_conf 983023420013466654155873239999997389988-89999999978976853799------44365789754355
Q gi|254780125|r 153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGK 225 (262)
Q Consensus 153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~ 225 (262)
...++...+-.. ...+...+-+++++||+.+++..+ ...+-+.|.+.|+..|.... .+.||++|.+.-..
T Consensus 30 ~~~glt~~q~~v---L~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~ 106 (140)
T 3hsr_A 30 KEYDLTYTGYIV---LMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp GGGTCCHHHHHH---HHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred HHCCCCHHHHHH---HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf 885999999999---99998679989999999989786479999999972797798215888886888889889999999
Q ss_pred H
Q ss_conf 3
Q gi|254780125|r 226 M 226 (262)
Q Consensus 226 ~ 226 (262)
.
T Consensus 107 ~ 107 (140)
T 3hsr_A 107 L 107 (140)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 14
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=82.02 E-value=1.7 Score=21.51 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 0013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
.+........+...+-.++++||+.+++..+ ..+.-+-|.+.|+..|.... .+.||++|.+.-...
T Consensus 37 t~~q~~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 37 TPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9999999999998799099999998785735299999999738966972279998867888898899999999
No 15
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=78.52 E-value=3 Score=19.89 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf 466654155873239999997389988-8999999997897685379--9----443657897543553
Q gi|254780125|r 165 IKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262)
Q Consensus 165 ~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262)
.....++...+-+++++||+.+++..+ ....-+.|.+.|+..|..+ + .+.||++|.......
T Consensus 48 ~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~~~~D~R~~~i~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 999999996799699999999896988999999998164427865337788547887788799999999
No 16
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=77.51 E-value=3.3 Score=19.60 Aligned_cols=83 Identities=18% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEEC
Q ss_conf 999999999983023420013466654155873239999997389988-8999999997897685379------944365
Q gi|254780125|r 144 LLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPT 216 (262)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt 216 (262)
+...........|+...+-..............+++++||+.+++..+ .-..-+.|.+.|+..|... ..-.+|
T Consensus 54 l~~~~~~~l~~~GLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 133 (181)
T 2fbk_A 54 LGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLT 133 (181)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEEC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCC
T ss_conf 99999999988697999999999998509999909999999978787579999999998788243578778862211328
Q ss_pred HHHHHHHHHH
Q ss_conf 7897543553
Q gi|254780125|r 217 PKGEERGGKM 226 (262)
Q Consensus 217 ~kg~~~g~~~ 226 (262)
++|...-...
T Consensus 134 ~~G~~l~~~~ 143 (181)
T 2fbk_A 134 PQGRALVTHL 143 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 8899999999
No 17
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=75.66 E-value=3.7 Score=19.27 Aligned_cols=171 Identities=12% Similarity=0.072 Sum_probs=89.6
Q ss_pred EEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999988289688--999998456743288722799831068971877999998579965799999888978999996
Q gi|254780125|r 26 FVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRK 103 (262)
Q Consensus 26 F~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~Li~~s~~p~A~~F~~Wv~~eVLPsIRk 103 (262)
....++|+.++++.+ .+.++.+.+........+...+......++|.|-=.+.- .-..|.+.+ +.
T Consensus 51 ~~~~~la~~l~~~ks~vs~~l~~L~~~g~I~r~~~~~D~R~~~i~lTe~g~~~i~~-----~~~~~~~~i--------~~ 117 (250)
T 1p4x_A 51 LPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAE-----RVTLFDQII--------KQ 117 (250)
T ss_dssp EEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHH-----HHHHHHHHH--------HH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHH-----HHHHHHHHH--------HH
T ss_conf 78999999968881069999999998889886579888885899989999999999-----999999999--------98
Q ss_pred HC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHH
Q ss_conf 07-75775332222342579999878999988640366899999999999983023420013466654155873239999
Q gi|254780125|r 104 TG-SYSVEAPKLRATSASTVLRVHKHLEELAKQAGLKDNQLLLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQI 182 (262)
Q Consensus 104 tG-~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~i 182 (262)
.+ .+..+... -................ ....+....++...+-...++.. .+..+.+++++|
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~l~k~~~Ls~~e~~vL~~L~-~~~~~~~~~~~l 180 (250)
T 1p4x_A 118 FNLADQSESQM-IPKDSKEFLNLMMYTMY---------------FKNIIKKHLTLSFVEFTILAIIT-SQNKNIVLLKDL 180 (250)
T ss_dssp HHHHTTCCSSC-SCCSHHHHHHHHHHHHH---------------HHHHHHHHCSSCHHHHHHHHHHH-TTTTCCEEHHHH
T ss_pred HCCCCHHHHCC-CCCCHHHHHHHHHHHHH---------------HHHHHHHHCCCCHHHHHHHHHHH-HCCCCCCCHHHH
T ss_conf 27001222213-50128999999999999---------------99999887498999999999998-699996769999
Q ss_pred HHHHCCCCCH-HHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf 9973899888-999999997897685379--9----443657897543553
Q gi|254780125|r 183 GERLNPPQRA-RFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262)
Q Consensus 183 ak~l~~~~sa-~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262)
|+.+++..++ -..-.-|.+.|+..|... + .-.+|++|.+.-...
T Consensus 181 a~~l~~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT~~g~~~~~~~ 231 (250)
T 1p4x_A 181 IETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 999788850699999999988998961799888727989898899999999
No 18
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.40 E-value=3.7 Score=19.25 Aligned_cols=55 Identities=20% Similarity=-0.008 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 55873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
...+-+++++||+.+++..+ ...+-+.|.+.|+..|..+. ...+|++|.+.-...
T Consensus 43 ~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~DkR~~~i~lT~~G~~~~~~~ 104 (145)
T 2a61_A 43 YFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 87799899999999897987899999998528937996758898867878898999999999
No 19
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=74.19 E-value=4 Score=19.02 Aligned_cols=58 Identities=22% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHH
Q ss_conf 654155873239999997389988-8999999997897685379------944365789754355
Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGK 225 (262)
Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~ 225 (262)
...+...+-+++++||+.+++..+ .-.+-..|.+.|+..|... ....||++|...-..
T Consensus 53 L~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~r~~~~~D~R~~~l~LT~~G~~~~~~ 117 (153)
T 2pex_A 53 MLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHH
T ss_conf 99998479989999999989688689999999998899898118998874787889899999999
No 20
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=72.95 E-value=4.3 Score=18.83 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHHC
Q ss_conf 466654155873239999997389988-89999999978976853799------4436578975435530
Q gi|254780125|r 165 IKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKMC 227 (262)
Q Consensus 165 ~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~ 227 (262)
......+...+-+++++||..+++..+ ....-+.|.+.|+..|.... ...||++|........
T Consensus 52 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~ 121 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 9999999867998999999997878715999999998579873045789888566578988999999999
No 21
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=71.10 E-value=3.9 Score=19.09 Aligned_cols=54 Identities=24% Similarity=0.151 Sum_probs=36.7
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHH
Q ss_conf 155873239999997389988-89999999978976853799------4436578975435
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGG 224 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~ 224 (262)
+...+-++.++||+.+++..+ ....-+-|.+.||..|.... ...+|++|...-.
T Consensus 49 l~~~~~~t~~eLa~~~~i~~~tit~~i~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~ 109 (147)
T 1z91_A 49 LWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHH
T ss_conf 9977994999999997978878999999999889979867788775468788988999999
No 22
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=69.69 E-value=3 Score=19.85 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=32.7
Q ss_pred CCHHHHHHHHCCCCCHHHH-HHHHHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf 2399999973899888999-9999978976853799443657897543
Q gi|254780125|r 177 LTITQIGERLNPPQRARFL-NKLLLKRGLQVSKVSGGYRPTPKGEERG 223 (262)
Q Consensus 177 l~~t~iak~l~~~~sa~~~-N~lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262)
.++++|++.+|++.++... -+.|.+.|+.. +.++.|.+|++|+...
T Consensus 44 ~~~~eLa~~lg~s~stvs~HL~~L~~aGLV~-~~~~~y~lt~~G~~v~ 90 (96)
T 1y0u_A 44 RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIE-RVGERWVVTDAGKIVD 90 (96)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEECTTTCCC-
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECCCCHHHH
T ss_conf 9799999998919989999999999889679-8479899865774188
No 23
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=69.04 E-value=5.2 Score=18.26 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=37.6
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC-CEEECHHHHHHHHH
Q ss_conf 155873239999997389988-89999999978976853799-44365789754355
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG-GYRPTPKGEERGGK 225 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~-~W~lt~kg~~~g~~ 225 (262)
+...+.+++++||+.+++..+ ..+.-+-|.+.|+..|..++ .-.||++|......
T Consensus 161 L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~GlV~r~~r~~~v~LT~~G~~~~~~ 217 (244)
T 2wte_A 161 LYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKL 217 (244)
T ss_dssp HHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHHHH
T ss_conf 997799899999999797988999999999988999983782279987879999999
No 24
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=67.53 E-value=5.5 Score=18.05 Aligned_cols=30 Identities=13% Similarity=-0.091 Sum_probs=19.1
Q ss_pred EEEEHHHHHHHHCCCCH--HHHHHHHCCCCCE
Q ss_conf 86679999988289688--9999984567432
Q gi|254780125|r 24 IWFVAKDVATALGYENS--NEAINAHCKGVAK 53 (262)
Q Consensus 24 ~wF~a~dva~~LGy~~~--~~ai~~~~~~~~~ 53 (262)
.-..+.|+|+.||+..+ ++.++.+++....
T Consensus 35 ~~lsl~eia~~l~l~kst~~RlL~tL~~~G~l 66 (265)
T 2ia2_A 35 QRRTLSDVARATDLTRATARRFLLTLVELGYV 66 (265)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 99799999999794999999999999987995
No 25
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=66.70 E-value=5.7 Score=17.94 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHH
Q ss_conf 9999983023420013466654155873239999997389988-89999999978976853799------4436578975
Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEE 221 (262)
Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~ 221 (262)
.......|+...+-... ..+...+.+++++||+.+++..+ ...+-+-|.+.|+..|.... ...||++|..
T Consensus 33 ~~~l~~~gLt~~q~~iL---~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~Glv~r~~~~~D~R~~~l~LT~~G~~ 109 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVL---ACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRA 109 (155)
T ss_dssp HHHHHHTTCCHHHHHHH---HHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHH
T ss_pred HHHHHHCCCCHHHHHHH---HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH
T ss_conf 99998829699999999---999857996999999998969988999999999689779831588888678788989999
Q ss_pred HHHHH
Q ss_conf 43553
Q gi|254780125|r 222 RGGKM 226 (262)
Q Consensus 222 ~g~~~ 226 (262)
.....
T Consensus 110 ~~~~~ 114 (155)
T 3cdh_A 110 LAESL 114 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 26
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.60 E-value=6 Score=17.80 Aligned_cols=74 Identities=12% Similarity=-0.022 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHH
Q ss_conf 999983023420013466654155873239999997389988-8999999997897685379--9----44365789754
Q gi|254780125|r 150 GVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEER 222 (262)
Q Consensus 150 ~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~ 222 (262)
......++...+-.... ++...+-+++++||+.+++..+ .-..-+.|.+.|+..|... + ...+|++|.+.
T Consensus 27 ~~l~~~glt~~q~~vL~---~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~glI~~~~~~~D~R~~~l~LT~~G~~~ 103 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIR---ILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQC 103 (142)
T ss_dssp HHHHHHTCCHHHHHHHH---HHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHH
T ss_pred HHHHHCCCCHHHHHHHH---HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHH
T ss_conf 99988498999999999---999879979999999979898899999999995898798306889886787889889999
Q ss_pred HHHH
Q ss_conf 3553
Q gi|254780125|r 223 GGKM 226 (262)
Q Consensus 223 g~~~ 226 (262)
-...
T Consensus 104 ~~~~ 107 (142)
T 2fbi_A 104 FVSM 107 (142)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 27
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=65.52 E-value=6 Score=17.79 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHH
Q ss_conf 9999983023420013466654155873239999997389988-8999999997897685379------94436578975
Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEE 221 (262)
Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~ 221 (262)
.......++...+....++. .....+.++.++||+.+++..+ ...+-+.|.+.|+..|... ....+|++|.+
T Consensus 24 ~~~~~~~glt~~q~~vL~~l-~~~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~l~lT~~G~~ 102 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYL-SRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK 102 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHH-HHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHH
T ss_conf 99998869899999999999-84899995999999998978858999999998877788663057984222111787899
Q ss_pred HHHHH
Q ss_conf 43553
Q gi|254780125|r 222 RGGKM 226 (262)
Q Consensus 222 ~g~~~ 226 (262)
.-...
T Consensus 103 ~~~~~ 107 (141)
T 3bro_A 103 LETII 107 (141)
T ss_dssp THHHH
T ss_pred HHHHH
T ss_conf 99999
No 28
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=65.09 E-value=6.1 Score=17.74 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 3466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 164 DIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 164 ~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
.......+...+-++.++||+.+++..+ ....-..|.+.|+..|..+. .-.||++|.......
T Consensus 39 q~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~ 108 (142)
T 3ech_A 39 DVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHA 108 (142)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9999999997799899999999896987999999999987985350378888745657888899999999
No 29
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=64.85 E-value=6.2 Score=17.71 Aligned_cols=57 Identities=25% Similarity=0.162 Sum_probs=37.3
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 4155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
.+...+-+++++||+.+++..+ .-..-+-|.+.|+..|... ....||++|...-...
T Consensus 52 ~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~g~v~r~~~~~DrR~~~l~lT~~G~~~~~~~ 115 (154)
T 2eth_A 52 YVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp HHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 9998699499999999897988999999999988890210355556401200589899999999
No 30
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=63.44 E-value=6.6 Score=17.54 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC----C----CEEECHHHHHHH
Q ss_conf 983023420013466654155873239999997389988-8999999997897685379----9----443657897543
Q gi|254780125|r 153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS----G----GYRPTPKGEERG 223 (262)
Q Consensus 153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~----~----~W~lt~kg~~~g 223 (262)
...++...+-.... .+...+-+++++||+.+++..+ .-.+-..|.+.|+..|... + ...||++|++..
T Consensus 35 ~~~glt~~q~~vL~---~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~glV~r~~~~~~~DrR~~~l~LT~~G~~~~ 111 (154)
T 2qww_A 35 ASLGLTIQQLAMIN---VIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHTCCHHHHHHHH---HHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHCCCCHHHHHHHH---HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCHHHHHHH
T ss_conf 87698999999999---999779989999999979787579999999997899799601566765610103488899999
Q ss_pred HHH
Q ss_conf 553
Q gi|254780125|r 224 GKM 226 (262)
Q Consensus 224 ~~~ 226 (262)
...
T Consensus 112 ~~~ 114 (154)
T 2qww_A 112 KRS 114 (154)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 31
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.20 E-value=6.6 Score=17.51 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 0013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
.+........+...+-+++++||+.+++..+ ...+-.-|.+.||..|.... .-.||++|.......
T Consensus 36 t~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~LT~~G~~~~~~~ 108 (155)
T 1s3j_A 36 TPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 108 (155)
T ss_dssp CHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 9999999999998699799999999896998999999999862425520233677520002489899999999
No 32
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.75 E-value=6.8 Score=17.45 Aligned_cols=70 Identities=17% Similarity=-0.087 Sum_probs=44.9
Q ss_pred HHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHHC
Q ss_conf 3023420013466654155873239999997389988-89999999978976853799------4436578975435530
Q gi|254780125|r 155 TGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKMC 227 (262)
Q Consensus 155 ~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~ 227 (262)
.++...+-.. ..++...+.+++++||+.+++..+ ...+-+.|.+.|+..|.... ...||++|++.-....
T Consensus 44 ~gLt~~q~~i---L~~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~l~~~~~ 120 (207)
T 2fxa_A 44 YDLNINEHHI---LWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLL 120 (207)
T ss_dssp GTCCHHHHHH---HHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHH---HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECHHHHHHHHHHH
T ss_conf 7999999999---9999976994999999998869879999999999689988723898875689888988999999999
No 33
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=61.53 E-value=7.1 Score=17.31 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=36.0
Q ss_pred EEEEEHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 086679999988289688--999998456743288722799831068971877999998579965799999888978999
Q gi|254780125|r 23 NIWFVAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPT 100 (262)
Q Consensus 23 e~wF~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~Li~~s~~p~A~~F~~Wv~~eVLPs 100 (262)
.+-..+.|+|+.+|+..+ ++.++.+++...... + ++ .|.-=+.++.|..... ....+.+ ++...|-.
T Consensus 27 ~~~~~~~eia~~~gl~~st~~RlL~tL~~~G~l~~--~--~~----~Y~lG~~~~~l~~~~~--~~~~~~~-~a~p~l~~ 95 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG--S--GG----RWSLTPRVLSIGQHYS--ESHALIE-AAMPRLLE 95 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--E--TT----EEEECGGGHHHHTTCC--HHHHHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--C--CC----EEEECCHHHHHHHHHH--CCCCHHH-HHHHHHHH
T ss_conf 99989999999879399999999999997386532--2--98----3785504764435543--0476899-99999999
Q ss_pred HHH
Q ss_conf 996
Q gi|254780125|r 101 LRK 103 (262)
Q Consensus 101 IRk 103 (262)
++.
T Consensus 96 L~~ 98 (257)
T 2g7u_A 96 VAE 98 (257)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 34
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=61.31 E-value=7.2 Score=17.28 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=35.3
Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC---CEEECHHHHHH
Q ss_conf 15587323999999738998889999999---978976853799---44365789754
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG---GYRPTPKGEER 222 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~---~W~lt~kg~~~ 222 (262)
+-..+.+++.+|||.|++ +-+.+|+.| .+.|..++ +.+ .|.++..+..+
T Consensus 22 ~g~g~~~tA~~LAk~lg~--~Kk~vN~~LY~L~k~g~v~~-~~~~PP~W~l~~~~~~~ 76 (81)
T 1qbj_A 22 LGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HCTTCCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC------
T ss_pred CCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECCCCCCC
T ss_conf 379975219999999698--88898999999998798640-69989960637888755
No 35
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=61.11 E-value=7 Score=17.34 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
Q ss_conf 8732399999973899888999999997897685379
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVS 210 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~ 210 (262)
+..+++.++|..-|++.|.+.+|......|++.|+..
T Consensus 2 ~~W~ta~ELagLpglP~s~~gv~~~AkregW~~r~r~ 38 (69)
T 1g4d_A 2 SIWCSPQEIMAADGMPGSVAGVHYRANVQGWTKRKKE 38 (69)
T ss_dssp CCCBCHHHHHTSTTSCSSHHHHHHHHHHHTCCEEECC
T ss_pred CEEECHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 7248599992699999888999999997690023044
No 36
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=60.59 E-value=7.4 Score=17.20 Aligned_cols=70 Identities=20% Similarity=0.077 Sum_probs=42.9
Q ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 83023420013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 154 ITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 154 ~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
..++...+-..... +. ++.+++++||+.+++..+ .-++-+-|.+.|+..|..+. ...||++|...-...
T Consensus 32 ~~~lt~~q~~vL~~---i~-~~~~t~~ela~~~~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~ 107 (146)
T 2gxg_A 32 ELNLSYLDFLVLRA---TS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (146)
T ss_dssp TTTCCHHHHHHHHH---HT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHH---HH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHHHHHHH
T ss_conf 76979999999999---98-599199999999897986999999999868897860787677504430589899999999
Q ss_pred C
Q ss_conf 0
Q gi|254780125|r 227 C 227 (262)
Q Consensus 227 ~ 227 (262)
.
T Consensus 108 ~ 108 (146)
T 2gxg_A 108 I 108 (146)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 37
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=60.30 E-value=7.5 Score=17.17 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=39.1
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC----C--CEEECHHHHHHHHHH
Q ss_conf 54155873239999997389988-8999999997897685379----9--443657897543553
Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS----G--GYRPTPKGEERGGKM 226 (262)
Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~----~--~W~lt~kg~~~g~~~ 226 (262)
..+...+-+++++||..+++..+ .-..-+-|.+.|+..|... + ...||++|.++....
T Consensus 44 ~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~~gli~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (142)
T 2bv6_A 44 TILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp HHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 99997799899999999897987999999999988997983378888755644788799999999
No 38
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=59.79 E-value=7.6 Score=17.11 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 87323999999738998889-999999978976853799443657
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
.+.+++++|++.+|++.++. .=-+.|.+.|+......|+|..|.
T Consensus 57 ~~~~~v~ela~~l~~s~stvS~HL~~L~~aGlV~~~r~Gr~~~Y~ 101 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQ 101 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEE
T ss_conf 299769999999891988899999999988933689873789999
No 39
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=59.64 E-value=7.6 Score=17.09 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=46.8
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHH
Q ss_conf 98302342001346665415587323999999738998-889999999978976853799------44365789754355
Q gi|254780125|r 153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGK 225 (262)
Q Consensus 153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~ 225 (262)
...++...+-..... +..+.+-+++++||+.+++.. +.-.+-..|.+.|+..|.... ...+|++|.+.-..
T Consensus 41 ~~~glt~~q~~vL~~--L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~Glv~r~~~~~DrR~~~v~lT~~G~~~~~~ 118 (160)
T 3boq_A 41 DETGLSLAKFDAMAQ--LARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp HHHSCCHHHHHHHHH--HHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH--HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf 881929999999999--986899998999999989688589999999986798798776888875788778889999999
Q ss_pred HC
Q ss_conf 30
Q gi|254780125|r 226 MC 227 (262)
Q Consensus 226 ~~ 227 (262)
..
T Consensus 119 ~~ 120 (160)
T 3boq_A 119 AS 120 (160)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 40
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=58.29 E-value=5.5 Score=18.07 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECC
Q ss_conf 873239999997389988899999999789768537
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKV 209 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~ 209 (262)
+..+++.+||..-|++.|.+.+|......|++.|+.
T Consensus 2 k~W~tA~ELagLpGlP~t~~gv~~~Akre~W~~r~r 37 (76)
T 1tns_A 2 ELWVSPKELANLPGLPKTSAGVIYVAKKQGWQNRTR 37 (76)
T ss_dssp CCEECHHHHTTCSSSCSSHHHHHHHHHTTCCCCCCC
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCC
T ss_conf 731669999258999988899999999678223133
No 41
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=58.04 E-value=8.1 Score=16.91 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=33.7
Q ss_pred CCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 8732-399999973899-8889999999978976853799443657
Q gi|254780125|r 174 DEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 174 ~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
...| +.+++|+.+|++ .+.+..-+.|...|+.++..+..+.+..
T Consensus 34 G~~LPser~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g~G~~V~~ 79 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECC
T ss_conf 6999549999999392889999999999988917996386799808
No 42
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=55.84 E-value=8.8 Score=16.67 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 3023420013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 155 TGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 155 ~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
.++...+-....... .....-+++++||+.+++..+ ...+-+.|.+.|+..|..+. ...||++|.+.....
T Consensus 27 ~glt~~q~~vL~~l~-~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~ 104 (139)
T 3eco_A 27 FDITNEQGHTLGYLY-AHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF 104 (139)
T ss_dssp GTCCHHHHHHHHHHH-HSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 698999999999998-359999699999999896887899999999978897851678998846757898899999999
No 43
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=55.59 E-value=8.9 Score=16.65 Aligned_cols=71 Identities=15% Similarity=0.078 Sum_probs=44.7
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC----C--CEEECHHHHHHHHH
Q ss_conf 983023420013466654155873239999997389988-8999999997897685379----9--44365789754355
Q gi|254780125|r 153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS----G--GYRPTPKGEERGGK 225 (262)
Q Consensus 153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~----~--~W~lt~kg~~~g~~ 225 (262)
...++...+-. ....+...+-+++++||+.+++..+ .-.+-..|.+.|+..|... + ...||++|...-..
T Consensus 40 ~~~glt~~q~~---vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 40 SALEISLPQFT---ALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp HTTTCCHHHHH---HHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred HHCCCCHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHH
T ss_conf 67597999999---999999779989999999989688699999999998899798527999875687889889999999
Q ss_pred H
Q ss_conf 3
Q gi|254780125|r 226 M 226 (262)
Q Consensus 226 ~ 226 (262)
.
T Consensus 117 ~ 117 (162)
T 3k0l_A 117 C 117 (162)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 44
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=55.58 E-value=8.9 Score=16.64 Aligned_cols=72 Identities=17% Similarity=0.080 Sum_probs=44.1
Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHH
Q ss_conf 983023420013466654155873239999997389988-89999999978976853799------44365789754355
Q gi|254780125|r 153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGK 225 (262)
Q Consensus 153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~ 225 (262)
...++...+-.... .+...+..++++||+.+++..+ .-++-..|.+.|+..|.... ...||++|......
T Consensus 47 ~~~gLt~~q~~vL~---~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~ 123 (161)
T 3e6m_A 47 ASEKLPTPKLRLLS---SLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHTCCHHHHHHHH---HHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHCCCCHHHHHHHH---HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHHH
T ss_conf 78697999999999---999779989999999989788799999999983897798325899873110168889999999
Q ss_pred HC
Q ss_conf 30
Q gi|254780125|r 226 MC 227 (262)
Q Consensus 226 ~~ 227 (262)
..
T Consensus 124 ~~ 125 (161)
T 3e6m_A 124 IS 125 (161)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 45
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=53.95 E-value=9.4 Score=16.47 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=31.4
Q ss_pred HCCCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 1558732399999973899888-9999999978976853799443657
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+...+.+++++|+..+|++.++ -.--+.|.+.|+......|+|..|.
T Consensus 51 L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlV~~~r~Gr~~~Y~ 98 (122)
T 1u2w_A 51 LCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYS 98 (122)
T ss_dssp HHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf 987889279999999888732699999999988904899987889999
No 46
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=53.07 E-value=9.7 Score=16.38 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 0013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
.+........+...+-++++++|+.+++..+ ....-+-|.+.|+..|.... ...+|++|...-...
T Consensus 28 t~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~l~lT~~G~~l~~~~ 100 (138)
T 3bpv_A 28 TDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (138)
T ss_dssp CHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9999999999985899799999999897987999999999968987860289988756878898999999999
No 47
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=52.91 E-value=9.8 Score=16.36 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=38.0
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
.....-+++++||+.+++..+ ...+-..|.+.|+..|... ....||++|.+.-...
T Consensus 63 ~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~GlI~r~~~~~DrR~~~v~LT~~G~~~~~~~ 125 (166)
T 3deu_A 63 HQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (166)
T ss_dssp HHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 976989799999999798998999999999858988861316898857877787699999999
No 48
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.68 E-value=9.8 Score=16.34 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=38.6
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
......++.++|+..+++..+ .-..-+.|.+.|+..|... ....||++|...-...
T Consensus 47 ~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~~~~ 109 (146)
T 2fbh_A 47 ARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp HHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 867999999999999896898999999999639877863678998956878898899999999
No 49
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=52.40 E-value=8.4 Score=16.82 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf 8732399999973899888-999999997897685379944365
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPT 216 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262)
.+.+++++|+..+|++.++ -.=-+.|.+.|+..+...|+|..|
T Consensus 69 ~g~~tv~eLa~~l~is~stvS~HL~~L~~aGLV~~~r~Gr~~~Y 112 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEE
T ss_conf 09938999999989199999999998998897588987798999
No 50
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=50.72 E-value=9.5 Score=16.43 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 7323999999738998889-999999978976853799443657
Q gi|254780125|r 175 EYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+.+++++|++.+|++.++. .=-+.|.+.|+......|+|..|.
T Consensus 30 ~~~~v~ela~~l~~s~~tvS~HL~~L~~aGlV~~~r~Gr~~~Y~ 73 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCA 73 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEE
T ss_conf 99479999999891999999999999988986267658888999
No 51
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=49.93 E-value=11 Score=16.05 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=36.9
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC--CC----CEEECHHHHHHHHHH
Q ss_conf 4155873239999997389988-899999999789768537--99----443657897543553
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV--SG----GYRPTPKGEERGGKM 226 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~--~~----~W~lt~kg~~~g~~~ 226 (262)
.+...+..+.++||+.+++..+ ....-+-|.+.|+..|.. ++ ...+|++|.+.....
T Consensus 42 ~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~ 105 (138)
T 1jgs_A 42 SIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQC 105 (138)
T ss_dssp HHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9987799899999999897887999999999868977985568888756888898899999999
No 52
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=49.46 E-value=11 Score=16.08 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHCCCCC--HHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 73239999997389988--89999999978976853799443657
Q gi|254780125|r 175 EYLTITQIGERLNPPQR--ARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~s--a~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+-+++++|++.+|++.+ .+.+.. | +.|+......|+|..|.
T Consensus 40 ~~~~v~el~~~l~~s~stvS~HL~~-L-~aglV~~~r~G~~~~Y~ 82 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCK-M-RGKVLKRNRQGLEIYYS 82 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHH-H-BTTTBEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH-H-HHCCCEEEEECCEEEEE
T ss_conf 9927999899888497699999999-9-92987389875889999
No 53
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=49.45 E-value=11 Score=16.00 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=24.3
Q ss_pred EHHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHH
Q ss_conf 79999988289688--9999984567432887227998310689718779
Q gi|254780125|r 27 VAKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDV 74 (262)
Q Consensus 27 ~a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gl 74 (262)
+..-.|+.|+.+.+ ++.++.+-+.........+.+| ...|+.|-
T Consensus 18 s~~~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~----~~lT~~G~ 63 (305)
T 3fxq_A 18 SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRG----VSLTSFGQ 63 (305)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEECSSS----EEECHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC----EEECHHHH
T ss_conf 99999999888889999999999998699899985991----47997375
No 54
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=48.77 E-value=11 Score=15.93 Aligned_cols=29 Identities=3% Similarity=-0.002 Sum_probs=12.8
Q ss_pred CEEEEEHHHHHHHHCCCC--HHHHHHHHCCC
Q ss_conf 908667999998828968--89999984567
Q gi|254780125|r 22 QNIWFVAKDVATALGYEN--SNEAINAHCKG 50 (262)
Q Consensus 22 ge~wF~a~dva~~LGy~~--~~~ai~~~~~~ 50 (262)
|+..-.-.++|+.+|.+. .++|+..+.++
T Consensus 26 G~kLPsE~~La~~~~VSR~TvR~Al~~L~~~ 56 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQK 56 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 1999169999999895999999999999972
No 55
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.67 E-value=11 Score=15.92 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=39.1
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
....+.+++++||..+++..+ ....-+-|.+.|+..|... ..-.||++|.+.-...
T Consensus 45 ~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~DrR~~~i~lT~~G~~~~~~~ 107 (147)
T 2hr3_A 45 DRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN 107 (147)
T ss_dssp HHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECHHHHHHHHHH
T ss_conf 976999899999999897987999999999867966873578877620024788899999999
No 56
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=48.38 E-value=11 Score=15.89 Aligned_cols=47 Identities=17% Similarity=0.044 Sum_probs=32.8
Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECC-CCCEEECHH
Q ss_conf 15587323999999738998889999999---9789768537-994436578
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKV-SGGYRPTPK 218 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~-~~~W~lt~k 218 (262)
+-..|--++=.|||.+|+ .+|+.+|+.| ...|+.-+.+ ...|.+|.+
T Consensus 19 L~~~gps~AL~IAKnlGl-~takdVN~~Ly~lekqhll~~d~k~~~W~iy~~ 69 (72)
T 3eyi_A 19 LKDNGPQRALVIAQALGM-RTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRW 69 (72)
T ss_dssp HHHHCSEEHHHHHHHTTC-CSGGGTHHHHHHHHHTTSEEECTTTCEEEEC--
T ss_pred HHHCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 996698258899988582-317776599999998327776689744687555
No 57
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=46.69 E-value=12 Score=15.72 Aligned_cols=43 Identities=19% Similarity=0.044 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 732399999973899888-9999999978976853799443657
Q gi|254780125|r 175 EYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+..++++|++.+|++.++ ..--+.|.+.|+......|+|..|.
T Consensus 33 ~~~~v~eLa~~l~is~s~vS~HL~~L~~aGLV~~~r~Gr~~~Y~ 76 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYR 76 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCEEEEE
T ss_conf 99289999988888988999999999988988036448988999
No 58
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=46.45 E-value=12 Score=15.69 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 5415587323999999738998-889999999978976853799------443657897543553
Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
..+...+-+++++||+.+++.. +....-+-|.+.|+..|.... .-.+|++|.+.-...
T Consensus 40 ~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~gli~r~~~~~DrR~~~l~lT~~G~~~~~~~ 104 (139)
T 3bja_A 40 QVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp HHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 99998699899999847086888999999999988987983058898867878898899999999
No 59
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=46.09 E-value=12 Score=15.66 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 87323999999738998889-999999978976853799443657
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
.+-+++++|++.+|++.++. .=-+.|.+.|+......|+|.-|.
T Consensus 34 ~~~~~v~ela~~l~~s~~tvS~HL~~L~~aglV~~~r~G~~~~Y~ 78 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf 299379999999885956788999999988942699876899999
No 60
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=46.06 E-value=12 Score=15.65 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEEC
Q ss_conf 999999999983023420013466654155873239999997389988-89999999978976853
Q gi|254780125|r 144 LLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSK 208 (262)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk 208 (262)
.......+....|+....-+...... . +...+++++||+.+|+..+ .-..-+.|.+.|+..|.
T Consensus 11 ~~e~~~~~~~~~Gl~~~~~~il~~L~-~-~~~p~t~~eLa~~l~is~s~vs~~l~~L~~~GlV~r~ 74 (152)
T 1ku9_A 11 IIELFSELAKIHGLNKSVGAVYAILY-L-SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH-H-CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH-H-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999998298999999999999-7-6989299999999896885799999999988998985
No 61
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=45.62 E-value=13 Score=15.61 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 4155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
+......++.++||+.+++..+ .-++-.-|.+.|+..|... ....||++|...-...
T Consensus 48 l~~~~~~~t~~ela~~l~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~l~~~~ 111 (150)
T 3fm5_A 48 ACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDA 111 (150)
T ss_dssp HHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 9985989899999999788787788999989764764660186656612430589899999999
No 62
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=44.37 E-value=13 Score=15.48 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECC------C--CCEEECHHH
Q ss_conf 99999830234200134666541558732399999973899888-99999999789768537------9--944365789
Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKV------S--GGYRPTPKG 219 (262)
Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~------~--~~W~lt~kg 219 (262)
.......++...+-.... ++...+ +++++||+.++++.++ -..-..|.+.|+..|.. + -.+.||++|
T Consensus 28 ~~~~~~~glt~~q~~iL~---~l~~~~-~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~r~~d~~D~R~~~l~LT~~G 103 (151)
T 3kp7_A 28 KDLQTEYGISAEQSHVLN---MLSIEA-LTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKG 103 (151)
T ss_dssp HHHHHHHTCCHHHHHHHH---HHHHSC-BCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHH
T ss_pred HHHHHHCCCCHHHHHHHH---HHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHH
T ss_conf 999877599999999999---986289-9999999998968889999999998889830146776544224420467889
Q ss_pred HHHHHHH
Q ss_conf 7543553
Q gi|254780125|r 220 EERGGKM 226 (262)
Q Consensus 220 ~~~g~~~ 226 (262)
.+.....
T Consensus 104 ~~~~~~~ 110 (151)
T 3kp7_A 104 KKYIKER 110 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 63
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=44.34 E-value=13 Score=15.48 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=37.3
Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
+...+-+++.+||+.+++..+ ....-..|.+.|+..|... ..+.||++|.+.....
T Consensus 46 l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~ 108 (143)
T 3oop_A 46 IEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp HHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 986899799999999896997999999999756774341058998944768898999999999
No 64
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=44.25 E-value=13 Score=15.47 Aligned_cols=43 Identities=23% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 7323999999738998889-999999978976853799443657
Q gi|254780125|r 175 EYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+..++++|++.+|++.+.. .-=+.|.+.|+..+...|+|..|.
T Consensus 38 ~~~~v~el~~~l~~s~s~vS~HL~~L~~aglV~~~r~G~~~~Y~ 81 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf 99679999998765865899999999988934899887889999
No 65
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=44.17 E-value=13 Score=15.46 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=29.4
Q ss_pred CCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf 732-399999973899-888999999997897685379944365
Q gi|254780125|r 175 EYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT 216 (262)
Q Consensus 175 ~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262)
..| +.+++|+.+|++ .+.+..-+.|.+.|+.+++.++.+.+.
T Consensus 33 ~~LPser~La~~~~vSr~tVr~Al~~L~~~Gli~~~~g~G~~V~ 76 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFIT 76 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEE
T ss_conf 99904999999979898999999999998892799738158980
No 66
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=43.52 E-value=14 Score=15.40 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 4155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
.+...+-+++++||+.+++..+ .-.+-+-|.+.|+..|.... .-.||++|..+-...
T Consensus 39 ~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~ 102 (145)
T 3g3z_A 39 TLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 102 (145)
T ss_dssp HHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9998799499999999896988999999999857987985768887746878898799999999
No 67
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=42.78 E-value=14 Score=15.32 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=17.3
Q ss_pred CEEEEEHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 9086679999988289688999998456
Q gi|254780125|r 22 QNIWFVAKDVATALGYENSNEAINAHCK 49 (262)
Q Consensus 22 ge~wF~a~dva~~LGy~~~~~ai~~~~~ 49 (262)
.++|+...|||+.||.+ .+.+++..+
T Consensus 28 ~~~~lt~~evA~~LGvs--~~~V~~~i~ 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVP--VSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCC--HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCC--HHHHHHHHH
T ss_conf 77634899999996998--899999998
No 68
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=42.21 E-value=14 Score=15.26 Aligned_cols=51 Identities=25% Similarity=0.200 Sum_probs=34.3
Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHH
Q ss_conf 55873239999997389988-8999999997897685379--9----44365789754
Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEER 222 (262)
Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~ 222 (262)
...+-+++++||+.+++..+ .-..-+.|.+.|+..|... + ...+|++|.+.
T Consensus 41 ~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~ 98 (142)
T 3bdd_A 41 LKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREA 98 (142)
T ss_dssp HHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHH
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHH
T ss_conf 8779989999999989698689999999985898784489999896687889889999
No 69
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=41.99 E-value=14 Score=15.24 Aligned_cols=33 Identities=3% Similarity=-0.120 Sum_probs=20.5
Q ss_pred CEEEEEHHHHHHHHCCCC--HHHHHHHHCCCCCEE
Q ss_conf 908667999998828968--899999845674328
Q gi|254780125|r 22 QNIWFVAKDVATALGYEN--SNEAINAHCKGVAKR 54 (262)
Q Consensus 22 ge~wF~a~dva~~LGy~~--~~~ai~~~~~~~~~~ 54 (262)
|+..=.-.++|+.+|.+. .++|+..+..+....
T Consensus 30 G~~LPsE~eLa~~~~VSr~TvR~Al~~L~~eGli~ 64 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVV 64 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCE
T ss_conf 19992799999997959999999999999721504
No 70
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=41.81 E-value=14 Score=15.22 Aligned_cols=47 Identities=9% Similarity=-0.108 Sum_probs=31.0
Q ss_pred HCCCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 15587323999999738998889-999999978976853799443657
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+...+-+++++|+..+|++.++. .==+.|.+.|+......|+|.-|.
T Consensus 33 L~~~~~~~v~eLa~~l~~s~stvS~HL~~L~~aglV~~~r~G~~~~Y~ 80 (99)
T 3cuo_A 33 LSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYS 80 (99)
T ss_dssp HTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEE
T ss_pred HHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf 858999079997745585987999999999988941699888999999
No 71
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=41.41 E-value=15 Score=15.18 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHC
Q ss_conf 8732399999973899888999999---9978976853799------4436578975435530
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMC 227 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~ 227 (262)
.+.....++.+.+. |+|.+-+.+. |.+.|+..|..-. .+.||++|++..+.+.
T Consensus 25 ~g~~RF~eL~~~l~-gIS~~~Ls~rLk~Le~~GLv~R~~~~~~p~~veY~LT~~G~~L~~il~ 86 (107)
T 2hzt_A 25 HGKKRTSELKRLMP-NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILD 86 (107)
T ss_dssp TCCBCHHHHHHHCT-TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHH
T ss_pred CCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 19986999997764-679889999999999878455312568999557777851889999999
No 72
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=41.25 E-value=15 Score=15.16 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC
Q ss_conf 9999983023420013466654155873239999997389988-899999999789768537
Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV 209 (262)
Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~ 209 (262)
.......|+...+-+.... +...+-+++++||+.+++..+ ....-.-|.+.|+..|..
T Consensus 10 ~~~L~~~glt~~e~~v~~~---L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~ 68 (109)
T 1sfx_A 10 VKALEKLSFKPSDVRIYSL---LLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHTCCCHHHHHHHHH---HHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCHHHHHHHHH---HHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9999985999999999999---9804888799999997567018999999999599979874
No 73
>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1mja_A* 1mjb_A* 1mj9_A*
Probab=39.14 E-value=16 Score=14.95 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEECHH--HHHHHHHHCCCCCCCCCCCCEEEEECHHH
Q ss_conf 5873239999997389988899999999789768537994436578--97543553047534688331167545017
Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPTPK--GEERGGKMCDVPMQHVEGSTQQLKWNSNL 247 (262)
Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt~k--g~~~g~~~~~~p~~~~g~~~~q~~w~~~v 247 (262)
....+++.+|++.-+ ++...+-.-|...|+.. ..++++.++-. ..+.-.....++ +.--....+.|+|.|
T Consensus 207 ~~~~isi~dis~~T~--i~~~DIi~tL~~l~~l~-~~~g~~~i~~~~~~~~~~~~~~~k~--~~~idp~~L~W~P~v 278 (278)
T 1fy7_A 207 HQKEITIDEISSMTS--MTTTDILHTAKTLNILR-YYKGQHIIFLNEDILDRYNRLKAKK--RRTIDPNRLIWKPPV 278 (278)
T ss_dssp TCSEEEHHHHHHHHC--BCHHHHHHHHHHHTCEE-EETTEEEEECCHHHHHHHHHHHHTC--CCCCCGGGBCCCCC-
T ss_pred CCCCCCHHHHHHHCC--CCHHHHHHHHHHCCCEE-EECCEEEEEECHHHHHHHHHHHCCC--CCEECHHHCEECCCC
T ss_conf 699820999998729--99899999887679899-9799689997999999999973479--857863885428999
No 74
>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} SCOP: a.4.5.72 d.74.4.2
Probab=38.27 E-value=16 Score=14.86 Aligned_cols=51 Identities=33% Similarity=0.258 Sum_probs=36.9
Q ss_pred CCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHCC
Q ss_conf 2399999973899-888999999997897685379944365789754355304
Q gi|254780125|r 177 LTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKMCD 228 (262)
Q Consensus 177 l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~~~ 228 (262)
+--..+|+.|++| .+-|..-.+|.+.|+.....+|. .+|++|...-....+
T Consensus 31 iGRr~La~~L~l~Er~vRt~~~~Lk~~gLI~~~~~G~-~lT~~G~~~l~~l~~ 82 (200)
T 2p8t_A 31 LGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQRGH-FLTLKGKEIRDKLLS 82 (200)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CE-EECHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCE-EECHHHHHHHHHHHH
T ss_conf 6689999983973899999999997689589538842-885739999999999
No 75
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=37.22 E-value=17 Score=14.75 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=10.2
Q ss_pred EEEHHHHHHHHCCC
Q ss_conf 66799999882896
Q gi|254780125|r 25 WFVAKDVATALGYE 38 (262)
Q Consensus 25 wF~a~dva~~LGy~ 38 (262)
++.+.++|+.||.+
T Consensus 36 ~vs~~eLa~~l~vS 49 (187)
T 1j5y_A 36 PVSGAQLAEELSVS 49 (187)
T ss_dssp CBCHHHHHHHHTSC
T ss_pred CCCHHHHHHHHCCC
T ss_conf 67699999997989
No 76
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=36.50 E-value=17 Score=14.67 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf 83023420013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r 154 ITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262)
Q Consensus 154 ~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262)
..|+...+-..... +...+-+++++||+.+++..+ ..+.-..|.+.|+..|.... .-.||++|...-...
T Consensus 47 ~~gLt~~q~~iL~~---l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~~~~~~ 123 (162)
T 3cjn_A 47 ALGLSTAKMRALAI---LSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 123 (162)
T ss_dssp HHTCCHHHHHHHHH---HHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHH---HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 85959999999999---984799899999999897988999999999868966885226888866767898899999999
No 77
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=35.96 E-value=18 Score=14.62 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 87323999999738998889-999999978976853799443657
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
.+-.++++|+..+|++.+.. .=-+.|.+.|+......|.|..|.
T Consensus 36 ~~~~~v~eLa~~l~is~s~vS~HL~~L~~aglV~~~r~G~~~~Y~ 80 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYR 80 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEE
T ss_conf 099579999999890988899999999988934799886889999
No 78
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=35.75 E-value=18 Score=14.60 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf 873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r 174 DEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262)
...++..+||+.+++..+ ...+-..|.+.|+..|... ....||++|.+.-...
T Consensus 55 ~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~ 114 (148)
T 3jw4_A 55 ESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF 114 (148)
T ss_dssp TTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 999399999999897785899999999988885105778888834768898899999999
No 79
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=35.23 E-value=18 Score=14.54 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf 55873239999997389988-8999999997897685379--9----443657897543553
Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262)
Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262)
...+.+++++||+.+++..+ .-..-+.|.+.|+..|... + .-.+|++|+..-..+
T Consensus 49 ~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~glI~r~~~~~D~R~~~i~lT~~G~~~~~~l 110 (127)
T 2frh_A 49 NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESL 110 (127)
T ss_dssp TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 89998789999999798873699999999978977984037899858989998999999999
No 80
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=34.95 E-value=15 Score=15.10 Aligned_cols=41 Identities=17% Similarity=0.064 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCEEECCCCCEEECH
Q ss_conf 7323999999738998889999---999978976853799443657
Q gi|254780125|r 175 EYLTITQIGERLNPPQRARFLN---KLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
+-.++++|++.+|+ |.-.+. +.|.+.|+..+...|.|..|.
T Consensus 33 ~~~~v~ela~~lgi--s~stvS~HL~~L~~aglV~~~r~G~~~~Y~ 76 (118)
T 2jsc_A 33 GVCYPGQLAAHLGL--TRSNVSNHLSCLRGCGLVVATYEGRQVRYA 76 (118)
T ss_dssp TCCSTTTHHHHHSS--CHHHHHHHHHHHTTTTSEEEEECSSSEEEE
T ss_pred CCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf 99289999999892--999999999999988962799887989999
No 81
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=33.67 E-value=19 Score=14.37 Aligned_cols=30 Identities=3% Similarity=-0.039 Sum_probs=13.3
Q ss_pred CEEEEEHHHHHHHHCCCC--HHHHHHHHCCCC
Q ss_conf 908667999998828968--899999845674
Q gi|254780125|r 22 QNIWFVAKDVATALGYEN--SNEAINAHCKGV 51 (262)
Q Consensus 22 ge~wF~a~dva~~LGy~~--~~~ai~~~~~~~ 51 (262)
|+..-+-.++|.-||-+. .++|++.+.++.
T Consensus 25 G~~LPse~~La~~~gVSr~tVR~Al~~L~~~G 56 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVEAG 56 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 69987899999892999999999999999889
No 82
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=33.41 E-value=19 Score=14.35 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC---CEEECH
Q ss_conf 15587323999999738998889999999---978976853799---443657
Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG---GYRPTP 217 (262)
Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~---~W~lt~ 217 (262)
+-.....++-+|||.+|+ +-+.+|+.| .+.|..++ .++ .|.++.
T Consensus 26 ~g~g~~~tA~~LAk~lg~--~Kk~vN~~LY~L~k~g~v~~-~~~~PP~W~lt~ 75 (77)
T 1qgp_A 26 LGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAV 75 (77)
T ss_dssp HCSSSCEEHHHHHHHHCC--CHHHHHHHHHHHHHHTSEEE-ECSSSCEEEECC
T ss_pred CCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECC
T ss_conf 589876029999999698--88888999999998789530-699899326057
No 83
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=32.58 E-value=20 Score=14.26 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCC------EEECHHHHHHHHHH
Q ss_conf 32399999973899888-99999999789768537994------43657897543553
Q gi|254780125|r 176 YLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGG------YRPTPKGEERGGKM 226 (262)
Q Consensus 176 ~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~------W~lt~kg~~~g~~~ 226 (262)
-+++++||+.+++..++ -.+-..|.+.|+..|..... -.||++|.+.....
T Consensus 50 ~~t~~~la~~~~~~~~tvs~~i~~L~~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~ 107 (144)
T 3f3x_A 50 PRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA 107 (144)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9699999999897886899999999988984444778888845767898999999999
No 84
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=30.99 E-value=11 Score=15.89 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=20.9
Q ss_pred CCEEEEEHHHHHHHHCCCC--HHHHHHHHCCCCCE
Q ss_conf 8908667999998828968--89999984567432
Q gi|254780125|r 21 DQNIWFVAKDVATALGYEN--SNEAINAHCKGVAK 53 (262)
Q Consensus 21 dge~wF~a~dva~~LGy~~--~~~ai~~~~~~~~~ 53 (262)
.|+..=.-.++|+-+|.+. .++|+..+..+...
T Consensus 36 ~G~~LPsE~~La~~~~VSR~TvR~Al~~L~~eGlI 70 (247)
T 2ra5_A 36 PGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLL 70 (247)
T ss_dssp --------------------------------CEE
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 91999389999988697989999999999976985
No 85
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=30.79 E-value=21 Score=14.06 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEECHH
Q ss_conf 3239999997389988899999999789768537994436578
Q gi|254780125|r 176 YLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPTPK 218 (262)
Q Consensus 176 ~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt~k 218 (262)
.+++.++|+.++ ++.-++-..|.++|+. +...+ .+|+.
T Consensus 2 d~TVk~lA~~v~--~~vd~LL~Ql~~AGi~-ks~~D--~vt~~ 39 (49)
T 1nd9_A 2 DVTIKTLAAERQ--TSVERLVQQFADAGIR-KSADD--SVSAQ 39 (49)
T ss_dssp EECTTHHHHHHS--SSHHHHHHHHHHHTSC-CSSSS--CEETT
T ss_pred CCCHHHHHHHHC--CCHHHHHHHHHHCCCC-CCCCC--CCCHH
T ss_conf 333999999989--4999999999991899-99888--65999
No 86
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Probab=30.38 E-value=21 Score=14.01 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHCC
Q ss_conf 8732399999973899888999999---9978976853799------44365789754355304
Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMCD 228 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~~ 228 (262)
.|.....++.+.+. |+|.+-+... |.+.|+..|..-. .+.||++|.+..+.+..
T Consensus 33 ~g~~rF~eL~~~l~-gIS~~~Ls~rLk~L~~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~~ 95 (112)
T 1z7u_A 33 QGTKRNGELMRALD-GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS 95 (112)
T ss_dssp HSCBCHHHHHHHST-TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 29987999997762-4477889999999998898366477999984366658238799999999
No 87
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Probab=30.17 E-value=22 Score=13.99 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHC
Q ss_conf 58732399999973899888999999---9978976853799------4436578975435530
Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMC 227 (262)
Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~ 227 (262)
..|....+++.+.+. ++|.+.+++. |.+.|+..|.+-. .+.||++|...-+.+.
T Consensus 35 ~~g~~rF~el~~~l~-~iS~~~Ls~rLk~Le~~glI~r~~~~~~p~~v~Y~LT~~G~~L~~il~ 97 (107)
T 2fsw_A 35 NRRIIRYGELKRAIP-GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107)
T ss_dssp TTSCEEHHHHHHHST-TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred HCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 259988999987741-127789999999999887815456799999557746814889999999
No 88
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=29.84 E-value=22 Score=13.95 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHH
Q ss_conf 9999988289688--99999845674328872279983106897187799
Q gi|254780125|r 28 AKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVY 75 (262)
Q Consensus 28 a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly 75 (262)
..-.|+.|+.+.| +++++++-+.........+.++ ...|+.|-.
T Consensus 20 ~s~AA~~L~vsQpavS~~I~~LE~~lg~~LF~R~~~~----~~lT~~G~~ 65 (306)
T 3hhg_A 20 FSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQ----LSLTEEGAQ 65 (306)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSS----CEECHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCC----EEECHHHHH
T ss_conf 9999999887989999999999999699999986995----688863643
No 89
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=29.68 E-value=22 Score=13.93 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=24.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCCCEE
Q ss_conf 239999997389988899999999789768
Q gi|254780125|r 177 LTITQIGERLNPPQRARFLNKLLLKRGLQV 206 (262)
Q Consensus 177 l~~t~iak~l~~~~sa~~~N~lL~~~g~q~ 206 (262)
-++++.|+.||+ +-..+...|...||..
T Consensus 33 gn~s~aA~~Lgi--~r~tL~~klkk~gI~~ 60 (63)
T 3e7l_A 33 YDLKRTAEEIGI--DLSNLYRKIKSLNIRV 60 (63)
T ss_dssp TCHHHHHHHHTC--CHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHCCCC
T ss_conf 989999999897--9999999999928995
No 90
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=29.21 E-value=19 Score=14.32 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=33.5
Q ss_pred CCCCC-CHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf 58732-39999997389988-89999999978976853799443657
Q gi|254780125|r 173 NDEYL-TITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262)
Q Consensus 173 ~~~~l-~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262)
....| +..+++..+|++.+ .++.-..|...|+..+..+.-|.+..
T Consensus 31 pG~~LPser~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVVEK 77 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEESCS
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEECC
T ss_conf 93998379999999798779999999999988948997586799877
No 91
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=28.98 E-value=23 Score=13.86 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=21.7
Q ss_pred CCEEEEEHHHHHHHHCCCC--HHHHHHHHCCCCCE
Q ss_conf 8908667999998828968--89999984567432
Q gi|254780125|r 21 DQNIWFVAKDVATALGYEN--SNEAINAHCKGVAK 53 (262)
Q Consensus 21 dge~wF~a~dva~~LGy~~--~~~ai~~~~~~~~~ 53 (262)
.|+..-.-.++|+.+|.+. .++|++.+..+...
T Consensus 30 ~G~~LPse~~La~~~~VSr~TVR~Al~~L~~eGli 64 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLL 64 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 93999379999999796999999999999977997
No 92
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=28.40 E-value=23 Score=13.79 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=37.5
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf 4155873239999997389988-8999999997897685379--9----443657897543553
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262)
.+...+-+++++||+.+++..+ .-..-+-|.+.|+..|... + .-.||++|...-...
T Consensus 50 ~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~Gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 113 (150)
T 2rdp_A 50 WLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (150)
T ss_dssp HHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 9997799599999999896887899999999718977985216898857867898999999999
No 93
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=28.27 E-value=23 Score=13.77 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEEC
Q ss_conf 4155873239999997389988-89999999978976853
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSK 208 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk 208 (262)
++...+.++.++||+.+|+..+ ....-..|.+.|+..|.
T Consensus 30 L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 9975989899999999897885899999999988997985
No 94
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=28.24 E-value=23 Score=13.77 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf 5873239999997389988-8999999997897685379--9----443657897543553
Q gi|254780125|r 173 NDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262)
Q Consensus 173 ~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262)
..+.+++++||+.+++..+ .-.+-+.|.+.|+..|... + .-.||++|.......
T Consensus 54 ~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~glI~r~~~~~D~R~~~l~LT~kG~~~~~~~ 114 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTC 114 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf 8999099999999896886999999999987986374326765401346788899999999
No 95
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.23 E-value=23 Score=13.77 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEEC-CCCCEEECHHHHHH
Q ss_conf 323999999738998889999999978976853-79944365789754
Q gi|254780125|r 176 YLTITQIGERLNPPQRARFLNKLLLKRGLQVSK-VSGGYRPTPKGEER 222 (262)
Q Consensus 176 ~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk-~~~~W~lt~kg~~~ 222 (262)
..+..+++..+++..|-..+.+.|.+.|+..++ ......|+++-+..
T Consensus 77 ~~~~~~l~~~~~~~vS~~TV~r~L~~~g~~~~~k~~~kP~Lt~~~k~~ 124 (141)
T 1u78_A 77 CKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLK 124 (141)
T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 330899999873460499999999975860004367899999999999
No 96
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=27.64 E-value=24 Score=13.70 Aligned_cols=13 Identities=8% Similarity=0.406 Sum_probs=10.8
Q ss_pred EEHHHHHHHHCCC
Q ss_conf 6799999882896
Q gi|254780125|r 26 FVAKDVATALGYE 38 (262)
Q Consensus 26 F~a~dva~~LGy~ 38 (262)
..+.++|..+|..
T Consensus 51 ~t~~eLa~~~g~~ 63 (363)
T 3dp7_A 51 YTLQEISGRTGLT 63 (363)
T ss_dssp BCHHHHHHHHTCC
T ss_pred CCHHHHHHHHCCC
T ss_conf 8999999887909
No 97
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=27.17 E-value=24 Score=13.64 Aligned_cols=32 Identities=6% Similarity=0.054 Sum_probs=19.3
Q ss_pred CEEEEEHHHHHHHHCCCC--HHHHHHHHCCCCCE
Q ss_conf 908667999998828968--89999984567432
Q gi|254780125|r 22 QNIWFVAKDVATALGYEN--SNEAINAHCKGVAK 53 (262)
Q Consensus 22 ge~wF~a~dva~~LGy~~--~~~ai~~~~~~~~~ 53 (262)
|+..=.-.++|+.+|.+. .++|+..+..+...
T Consensus 33 G~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGlI 66 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLIDGRV 66 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 8848479999999797999999999999977888
No 98
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium}
Probab=25.88 E-value=26 Score=13.49 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECC--CCCEEECHHHHHHHHHHCC
Q ss_conf 732399999973899888999999---99789768537--9944365789754355304
Q gi|254780125|r 175 EYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKV--SGGYRPTPKGEERGGKMCD 228 (262)
Q Consensus 175 ~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~--~~~W~lt~kg~~~g~~~~~ 228 (262)
.....+++.+.+. ++|.+.+++. |.+.|+..|.. +..+.||++|+...+.+..
T Consensus 41 ~r~~F~el~~~l~-~Is~~~Ls~rLk~L~~~Glv~r~~~~~veY~LT~~G~~L~~il~~ 98 (111)
T 3df8_A 41 TRQNFNDIRSSIP-GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMP 98 (111)
T ss_dssp SCBCHHHHHHTST-TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCEEEECCCCCEEEEECCCHHHHHHHHHH
T ss_conf 8577999998720-235888999999999799377269997588779688899999999
No 99
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=25.49 E-value=26 Score=13.44 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=11.3
Q ss_pred EHHHHHHHHCCCCHHH
Q ss_conf 7999998828968899
Q gi|254780125|r 27 VAKDVATALGYENSNE 42 (262)
Q Consensus 27 ~a~dva~~LGy~~~~~ 42 (262)
.+.++|..+|.. ++.
T Consensus 58 t~~eLA~~~g~~-~~~ 72 (352)
T 3mcz_A 58 TPAEVAASFGMV-EGK 72 (352)
T ss_dssp CHHHHHHHHTCC-HHH
T ss_pred CHHHHHHHHCCC-HHH
T ss_conf 999999882989-899
No 100
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=25.01 E-value=27 Score=13.38 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=39.0
Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHHC
Q ss_conf 4155873239999997389988-8999999997897685379------94436578975435530
Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKMC 227 (262)
Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~~ 227 (262)
.+...+-++++++|..++++.+ ...+-+-|.+.|+..|... ..-.||++|.+......
T Consensus 48 ~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 112 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR 112 (152)
T ss_dssp HHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99987998999999998969879999999999889977424998898453425898999999999
No 101
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=24.78 E-value=27 Score=13.35 Aligned_cols=48 Identities=23% Similarity=0.116 Sum_probs=35.7
Q ss_pred CCHHHHHHHHCCCCCHHH---HHHHHHHCCCEEECCCCCEEECHHHHHHHHHHC
Q ss_conf 239999997389988899---999999789768537994436578975435530
Q gi|254780125|r 177 LTITQIGERLNPPQRARF---LNKLLLKRGLQVSKVSGGYRPTPKGEERGGKMC 227 (262)
Q Consensus 177 l~~t~iak~l~~~~sa~~---~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~~ 227 (262)
...|.|....|. |-+. --.+|.+.|+.. ..++...+|++|..+-..+.
T Consensus 21 ~~~T~i~~~~nL--s~~~~~~yl~~L~~~GLI~-~~~~~y~lTekG~~~L~~l~ 71 (95)
T 1r7j_A 21 SPKTRIMYGANL--SYALTGRYIKMLMDLEIIR-QEGKQYMLTKKGEELLEDIR 71 (95)
T ss_dssp BCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEE-EETTEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHCCC--CHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHH
T ss_conf 977599998199--9999999999999888924-17984698823899999999
No 102
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=24.50 E-value=27 Score=13.32 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=12.2
Q ss_pred EEHHHHHHHHCCCCHHH
Q ss_conf 67999998828968899
Q gi|254780125|r 26 FVAKDVATALGYENSNE 42 (262)
Q Consensus 26 F~a~dva~~LGy~~~~~ 42 (262)
-.+.++|..+|.. ++.
T Consensus 40 ~t~~eLA~~~g~~-~~~ 55 (335)
T 2r3s_A 40 ESSQSLAQKCQTS-ERG 55 (335)
T ss_dssp ECHHHHHHHHTCC-HHH
T ss_pred CCHHHHHHHHCCC-HHH
T ss_conf 9999999771979-999
No 103
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.85 E-value=28 Score=13.24 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf 873239999997389988-8999999997897685379--9----443657897543553
Q gi|254780125|r 174 DEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262)
Q Consensus 174 ~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262)
.+-+++++||+.+++..+ .-++-.-|.+.|+..|... + .-.||++|.+.-...
T Consensus 41 ~~~~t~~~La~~l~i~~~~vs~~v~~L~~~g~i~r~~~~~D~R~~~l~LT~~G~~~~~~~ 100 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECHHHHHHHHHH
T ss_conf 899799999999897888999999999968986311488888800225888999999999
No 104
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=23.84 E-value=28 Score=13.24 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--CCEEECHH
Q ss_conf 5873239999997389988-8999999997897685379--94436578
Q gi|254780125|r 173 NDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--GGYRPTPK 218 (262)
Q Consensus 173 ~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~~W~lt~k 218 (262)
..+.++..+||+.++++.+ -..+-+.|.+.|+..+..+ |.+.|...
T Consensus 41 ~~~~vs~~eIAe~~~ip~~~L~kIl~~L~kaGlv~S~rG~~GGy~Lak~ 89 (159)
T 3lwf_A 41 GDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp TSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred CCCEECHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEECCC
T ss_conf 9981959999987890999999999998327938836888888545569
No 105
>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71
Probab=23.40 E-value=28 Score=13.18 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEE---ECC-CCCEEECHHHHHHHHHHCCCC
Q ss_conf 558732399999973899888-99999999789768---537-994436578975435530475
Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQV---SKV-SGGYRPTPKGEERGGKMCDVP 230 (262)
Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~---Rk~-~~~W~lt~kg~~~g~~~~~~p 230 (262)
...+..+.-.|+|+++++||. +++-.-|.+.|+.. +.. ++.=.||+.|.+.....+.-|
T Consensus 32 ~~g~~wSLAkl~KRa~vpMStLRR~LT~L~~aGlv~~~~~edG~g~A~LT~~G~~lc~~LFg~p 95 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQLFPDP 95 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHHCC--
T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHCCCC
T ss_conf 7999533999987708967999999999861780588863577401004166899999981899
No 106
>1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A
Probab=23.12 E-value=29 Score=13.14 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=23.1
Q ss_pred CCEEEEEEEEECCEEEEEHHHHHHHHCCCC
Q ss_conf 996799999438908667999998828968
Q gi|254780125|r 10 ESNKIRTIVDKDQNIWFVAKDVATALGYEN 39 (262)
Q Consensus 10 e~~~ir~v~~~dge~wF~a~dva~~LGy~~ 39 (262)
+||-+ ++...||.+-|+-.-+|+.|||+.
T Consensus 7 ~~f~~-vi~~~dG~i~~vN~~~~~~lGys~ 35 (368)
T 1wa9_A 7 DSFCC-VISMHDGIVLYTTPSITDVLGYPR 35 (368)
T ss_dssp CCEEE-EEETTTCBEEEECTTHHHHHCCCT
T ss_pred CCEEE-EEECCCCEEEEECHHHHHHHCCCH
T ss_conf 86899-999999889999869999879199
No 107
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=23.12 E-value=29 Score=13.14 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCC-----CCEEECHHHHHHHHHHC
Q ss_conf 58732399999973899888999999---997897685379-----94436578975435530
Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVS-----GGYRPTPKGEERGGKMC 227 (262)
Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~-----~~W~lt~kg~~~g~~~~ 227 (262)
..|.....++.+.++ +|.+-+... |.+.|+..|... -.+.||++|.+.-+.+.
T Consensus 34 ~~G~~RF~el~~~lg--is~~~Ls~rL~~L~~~GLv~r~~~~~p~r~eY~LT~~G~~L~pil~ 94 (146)
T 2f2e_A 34 FEGLTRFGEFQKSLG--LAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLV 94 (146)
T ss_dssp HTTCCSHHHHHHHHC--CCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHH
T ss_pred HCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 739967999998809--7789999999999988980676689998158846860889999999
No 108
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=22.42 E-value=30 Score=13.05 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCH--HHHHHHHCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988289688--999998456743288722799831068971877999998579965799999888978999996
Q gi|254780125|r 28 AKDVATALGYENS--NEAINAHCKGVAKRYPLKTEGGIQKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRK 103 (262)
Q Consensus 28 a~dva~~LGy~~~--~~ai~~~~~~~~~~~~~~~~g~~~~~~~i~E~gly~Li~~s~~p~A~~F~~Wv~~eVLPsIRk 103 (262)
..-.|+.|+.+.+ ++.++++-+........-+. .....|+.|..-+ +.|+++-+.+ +...-.++.
T Consensus 18 ~~~AA~~L~~sq~avS~~i~~LE~~lg~~Lf~R~~----~~~~lT~~G~~l~------~~a~~~l~~~-~~~~~~~~~ 84 (294)
T 1ixc_A 18 MAAAAKRLHVSQPPITRQMQALEADLGVVLLERSH----RGIELTAAGHAFL------EDARRILELA-GRSGDRSRA 84 (294)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC---------CCBCHHHHHHH------HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC----CCEEECHHHHHHH------HHHHHHHHHH-HHHHHHHHH
T ss_conf 99999998888899999999999986998999889----9627868899998------6201567765-567766653
No 109
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=22.31 E-value=30 Score=13.04 Aligned_cols=57 Identities=16% Similarity=0.010 Sum_probs=36.9
Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHH
Q ss_conf 54155873239999997389988-8999999997897685379--9----44365789754355
Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGK 225 (262)
Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~ 225 (262)
..+...+.+++++||+.++++.+ -...-+.|.+.|+..|... + .|.+|++|.+.-..
T Consensus 23 ~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~ 86 (100)
T 1ub9_A 23 IFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKR 86 (100)
T ss_dssp HHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCHHHHHHHHH
T ss_conf 9985189983999999989199899999999985890699874888973100359999999999
No 110
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=22.10 E-value=30 Score=13.01 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCCH--HHHHHHHCCCCCE
Q ss_conf 9999988289688--9999984567432
Q gi|254780125|r 28 AKDVATALGYENS--NEAINAHCKGVAK 53 (262)
Q Consensus 28 a~dva~~LGy~~~--~~ai~~~~~~~~~ 53 (262)
..-.|+.|+.+.+ ++.|+++-+....
T Consensus 21 ~s~AA~~L~isq~avS~~i~~LE~~lg~ 48 (306)
T 3fzv_A 21 VAEASRKLYIAQPSISTAVKGLEESFGV 48 (306)
T ss_dssp HHHHHHHHTCCC-CHHHHHHHHHHHC-C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999888889999999999998399
No 111
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.74 E-value=31 Score=12.96 Aligned_cols=44 Identities=7% Similarity=0.028 Sum_probs=31.5
Q ss_pred CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHH
Q ss_conf 399999973899-88899999999789768537994436578975
Q gi|254780125|r 178 TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEE 221 (262)
Q Consensus 178 ~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~ 221 (262)
+..++|+.+|++ .+.++.-..|...|+..+..+....++.....
T Consensus 37 s~~~La~~~~VSr~tVr~Al~~L~~~G~i~~~~g~G~~V~~~~~~ 81 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKM 81 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEECTTHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCCHH
T ss_conf 899999996989899999999999889479971707898379788
No 112
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=20.93 E-value=32 Score=12.85 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98310689718779999985799657999998889789999960775775
Q gi|254780125|r 61 GGIQKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRKTGSYSVE 110 (262)
Q Consensus 61 g~~~~~~~i~E~gly~Li~~s~~p~A~~F~~Wv~~eVLPsIRktG~Y~~~ 110 (262)
|.-+....++|..|-+-.--|++|.=+.+++-...-++-.+...|.|..+
T Consensus 36 g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~p~~G~~V~~ 85 (226)
T 3dbw_A 36 HELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTD 85 (226)
T ss_dssp TSSCTTCBCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCC
T ss_conf 99999099699999999892989999999999887893437999876654
Done!