Query gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs 117 out of 177
Neff 5.9
Searched_HMMs 33803
Date Sun May 22 16:39:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780126.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2o1m_A Probable amino-acid AB 49.4 10 0.0003 17.6 2.0 35 31-65 95-129 (151)
2 >1qks_A Cytochrome CD1 nitrite 37.2 15 0.00044 16.5 1.3 27 103-129 9-35 (97)
3 >1lst_A Lysine, arginine, orni 35.2 28 0.00082 14.9 2.9 33 34-66 95-127 (139)
4 >1xbr_A Protein (T protein); c 31.9 25 0.00075 15.1 1.8 36 4-43 24-59 (184)
5 >1nir_A Nitrite reductase; hem 28.0 28 0.00083 14.9 1.5 27 103-129 7-33 (94)
6 >2f2h_A Putative family 31 glu 26.2 32 0.00093 14.5 1.5 52 118-180 51-102 (123)
7 >3hv1_A Polar amino acid ABC u 24.4 43 0.0013 13.7 3.5 35 34-68 114-148 (171)
8 >3i6v_A Periplasmic His/Glu/Gl 22.5 46 0.0014 13.5 3.3 32 34-65 97-128 (149)
9 >2rp4_A Transcription factor P 21.3 49 0.0015 13.4 3.9 35 22-61 16-50 (76)
10 >2oiz_A Aromatic amine dehydro 20.2 52 0.0015 13.2 4.3 61 105-174 16-77 (95)
No 1
>>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} (A:1-99,A:207-258)
Probab=49.40 E-value=10 Score=17.62 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=28.0
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47999996378789999999999999875420002
Q gi|254780126|r 31 HYGCDIVFPKADTKQINAVEACLKTAVTEIFPNVS 65 (216)
Q Consensus 31 kYs~~llipK~d~~~~~~i~~AI~~a~~~~~~~k~ 65 (216)
-||.-|.+.|.+++...+|.+||++..+++--.+.
T Consensus 95 dFS~Pi~~~K~~~~L~~~in~al~~l~~dGt~~kl 129 (151)
T 2o1m_A 95 LFNKVFXFNKNEQTLSDDIDKALQEIIDDGTLKRL 129 (151)
T ss_dssp EECSSEEECTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 34443999599999999999999999968399999
No 2
>>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} (A:343-439)
Probab=37.20 E-value=15 Score=16.53 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCCEEEEEECCCCCCCEEECCCCCCCC
Q ss_conf 277389930377778836857874734
Q gi|254780126|r 103 YTDSVYISAKNKYVQPLLVDRQAQPVS 129 (216)
Q Consensus 103 ~~g~~~i~a~~k~~kP~ivD~~~~~i~ 129 (216)
.++.||+.|.|...|-.+||.+-..|.
T Consensus 9 ~t~rYFlvAAN~snKiavvdtk~~kl~ 35 (97)
T 1qks_A 9 GSHRYFITAANARNKLVVIDTKEGKLV 35 (97)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEE
T ss_conf 988878977168985899934566688
No 3
>>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} (A:1-88,A:189-239)
Probab=35.20 E-value=28 Score=14.89 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=24.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999963787899999999999998754200022
Q gi|254780126|r 34 CDIVFPKADTKQINAVEACLKTAVTEIFPNVSP 66 (216)
Q Consensus 34 ~~llipK~d~~~~~~i~~AI~~a~~~~~~~k~~ 66 (216)
+-|.+.|.|+....+|.+||.+..+++--.+..
T Consensus 95 ~gi~~~k~~~~L~~~in~al~~~~~dGt~~~i~ 127 (139)
T 1lst_A 95 TGVGLRKDDTELKAAFDKALTELRQDGTYDKMA 127 (139)
T ss_dssp BCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 799981899999999999999999795999999
No 4
>>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} (A:)
Probab=31.94 E-value=25 Score=15.13 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=25.1
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH
Q ss_conf 6776899833127864112367886624799999637878
Q gi|254780126|r 4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADT 43 (216)
Q Consensus 4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~ 43 (216)
||..||-.||.|. ++..+-+. ..+|.+.|-|..-|.
T Consensus 24 itk~GRrmFP~l~--~~vsGL~p--~~~Y~i~l~~~~~D~ 59 (184)
T 1xbr_A 24 VTKNGRRMFPVLK--VSMSGLDP--NAMYTVLLDFVAADN 59 (184)
T ss_dssp CBTTCEECSSCCE--EEEECSCT--TSEEEEEEEEEESSS
T ss_pred EECCCCCCCCCEE--EEEECCCC--CCCEEEEEEEEECCC
T ss_conf 9058724587218--99978995--644799999998557
No 5
>>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} (A:327-420)
Probab=28.02 E-value=28 Score=14.85 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCCCCCEEECCCCCCCC
Q ss_conf 277389930377778836857874734
Q gi|254780126|r 103 YTDSVYISAKNKYVQPLLVDRQAQPVS 129 (216)
Q Consensus 103 ~~g~~~i~a~~k~~kP~ivD~~~~~i~ 129 (216)
.++.||+.|.|...+-.+||++-+.|.
T Consensus 7 ~t~rYFlvAAN~snKiavVDtk~~kl~ 33 (94)
T 1nir_A 7 SSHRYFMTAANNSNKVAVIDSKDRRLS 33 (94)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEE
T ss_conf 888889998688984777853678189
No 6
>>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} (A:570-584,A:666-773)
Probab=26.24 E-value=32 Score=14.54 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=38.8
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCC
Q ss_conf 836857874734767740154079999999986407885311699974079972487555666
Q gi|254780126|r 118 PLLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP 180 (216)
Q Consensus 118 P~ivD~~~~~i~d~~~~iySGs~~kv~~~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE~~GG~~ 180 (216)
-.|.|.+|+.+..- .+...|..+++..+= .. +..++.|.+++.++..+ ||..
T Consensus 51 ~~V~d~~G~~~~tv-~v~R~G~~I~V~~~g------~~--~~wtv~l~~~~~v~~v~--Ggs~ 102 (123)
T 2f2h_A 51 CEVPAADGSVIFTL-KAARTGNTITVTGAG------EA--KNWTLCLRNVVKVNGLQ--DGSQ 102 (123)
T ss_dssp EEEECTTSCEEEEE-EEEEETTEEEEEEEE------CC--BSCEEEETTCCCCSEES--SEEE
T ss_pred EEEEECCCCEEEEE-EEEECCCEEEEEECC------CC--CCCEEEEEEEEEEECCC--CCCE
T ss_conf 99996399679999-999358789999636------67--75148998789985125--8722
No 7
>>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} (A:1-108,A:206-268)
Probab=24.40 E-value=43 Score=13.74 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=26.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99996378789999999999999875420002210
Q gi|254780126|r 34 CDIVFPKADTKQINAVEACLKTAVTEIFPNVSPDA 68 (216)
Q Consensus 34 ~~llipK~d~~~~~~i~~AI~~a~~~~~~~k~~~~ 68 (216)
.-|-|.|.|++...+|.+||++..+++--.+...+
T Consensus 114 ~~i~~~K~~~~L~~~in~al~~~~~dGt~~~i~~K 148 (171)
T 3hv1_A 114 FAVGARKVDKTLIKKINQGFETLYKNGEFQKISNK 148 (171)
T ss_dssp ECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89998289999999999999999968699999999
No 8
>>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} (A:1-90,A:174-232)
Probab=22.52 E-value=46 Score=13.51 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=24.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99996378789999999999999875420002
Q gi|254780126|r 34 CDIVFPKADTKQINAVEACLKTAVTEIFPNVS 65 (216)
Q Consensus 34 ~~llipK~d~~~~~~i~~AI~~a~~~~~~~k~ 65 (216)
+-|.+.|.|++...+|.+||.+..+++--.+.
T Consensus 97 ~gi~~~k~~~~L~~~in~al~~l~~dGt~~~i 128 (149)
T 3i6v_A 97 VGMGLRESDGELRGKFDAAITSMKEDGTLNTM 128 (149)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 79998389999999999999999969199999
No 9
>>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster} (A:)
Probab=21.33 E-value=49 Score=13.36 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=25.6
Q ss_pred CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2367886624799999637878999999999999987542
Q gi|254780126|r 22 KLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIF 61 (216)
Q Consensus 22 ~~~~g~~~~kYs~~llipK~d~~~~~~i~~AI~~a~~~~~ 61 (216)
-..+|+ |.+.|..||.+- -+.-|+-.|++++.+..
T Consensus 16 rt~dGd----YrL~itcpkKe~-LlqSIEgmik~aA~~vl 50 (76)
T 2rp4_A 16 RTPDGD----YRLAITCPNKEW-LLQSIEGMIKEAAAEVL 50 (76)
T ss_dssp CCTTTB----EEEEEEESCHHH-HHHHHHHHHHHHHHHHH
T ss_pred ECCCCC----EEEEEECCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 436996----579987075999-99999999999999998
No 10
>>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... (A:106-200)
Probab=20.18 E-value=52 Score=13.21 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=41.1
Q ss_pred CEEEEEECCCCCCCEEECCCCCCCCCCCCC-CCCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEEEECCC
Q ss_conf 738993037777883685787473476774-0154079999999986407885311699974079972487
Q gi|254780126|r 105 DSVYISAKNKYVQPLLVDRQAQPVSDPREV-FYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDE 174 (216)
Q Consensus 105 g~~~i~a~~k~~kP~ivD~~~~~i~d~~~~-iySGs~~kv~~~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE 174 (216)
-.++.|++-. ....|||-..+.... |+ .-.||+ .+|||. +++.+.---|+=+.+|.+.+++
T Consensus 16 ~l~v~N~TPa-~SVtVVDl~~~k~v~--ei~~tPGC~-----~iyP~~-~g~~~F~~lC~DGsl~~v~ld~ 77 (95)
T 2oiz_A 16 FIVLQNASPA-TSIGIVDVAKGDYVE--DVTAAAGCW-----SVIPQP-NRPRSFMTICGDGGLLTINLGE 77 (95)
T ss_dssp EEEEEEESSS-EEEEEEETTTTEEEE--EEGGGTTEE-----EEEECT-TSSSEEEEEETTSSEEEEEECT
T ss_pred EEEECCCCCC-CCEEEEECCCEEEEE--EECCCCCCE-----EEEEEE-CCCEEEEEECCCCEEEEEECCC
T ss_conf 1350235787-313786122105899--956888740-----445651-2550056203585699998578
Done!