Query gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs 117 out of 177
Neff 5.9
Searched_HMMs 23785
Date Sun May 22 09:14:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780126.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1je5_A Helix-destabilizing pro 100.0 8.5E-35 3.6E-39 232.8 14.8 163 4-182 7-190 (206)
2 2x6u_A T-box transcription fac 32.3 17 0.00073 15.2 1.8 36 4-43 28-63 (203)
3 1xbr_A Protein (T protein); co 30.6 19 0.00082 14.9 1.8 36 4-43 24-59 (184)
4 1h6f_A T-box transcription fac 22.7 14 0.00059 15.8 -0.1 36 4-43 27-62 (193)
5 2j9c_A GLNK1, hypothetical nit 21.0 35 0.0015 13.3 4.5 54 2-58 31-84 (119)
6 2rp4_A Transcription factor P5 16.1 45 0.0019 12.6 4.3 36 21-61 15-50 (76)
7 3e8v_A Possible transglutamina 11.6 61 0.0026 11.8 4.3 50 118-170 5-56 (82)
8 2qn6_B Translation initiation 10.7 65 0.0027 11.7 5.0 29 28-58 50-79 (93)
9 2kel_A SVTR protein, uncharact 9.0 75 0.0032 11.3 2.8 33 27-59 9-49 (56)
10 2fym_A Enolase; RNA degradosom 8.8 77 0.0032 11.2 1.2 27 119-145 10-36 (431)
No 1
>1je5_A Helix-destabilizing protein; OB-fold, beta barrel, DNA binding protein; 1.90A {Enterobacteria phage T7} SCOP: b.40.4.7
Probab=100.00 E-value=8.5e-35 Score=232.81 Aligned_cols=163 Identities=13% Similarity=0.203 Sum_probs=124.2
Q ss_pred EEEEEEE-ECCCCCCCCCCCCCCC--CCCCEEEEEEEECCCCHHH---HHHHHHHHHHHHHHH---HHHCCCCCCCCCCC
Q ss_conf 6776899-8331278641123678--8662479999963787899---999999999998754---20002210013444
Q gi|254780126|r 4 LTVKGRL-SYPALDTKVRMKLPDG--SSVEHYGCDIVFPKADTKQ---INAVEACLKTAVTEI---FPNVSPDAFLSAVR 74 (216)
Q Consensus 4 vt~kgr~-sYp~L~~P~~~~~~~g--~~~~kYs~~llipK~d~~~---~~~i~~AI~~a~~~~---~~~k~~~~~~~~~k 74 (216)
.|++|++ +||||++||+.|...+ ..+.+|||+|+||++|++. +.+|+++++++.+.. +.++.+
T Consensus 7 ttp~G~a~~Y~~L~~PD~~f~~~~~~~~~g~Y~v~L~v~k~d~~a~~~~~~i~~~~~~a~~~~~~~~~~k~~-------- 78 (206)
T 1je5_A 7 TSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPP-------- 78 (206)
T ss_dssp ECCSEEECSSCEEEEEECCC---CCSCCSCEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--------
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------
T ss_conf 279833340553378874433234678896389999974761789999999999999999999987503654--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC------------CCCCEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 4344665210175455555454456542277389930377------------7788368578747347677401540799
Q gi|254780126|r 75 SKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNK------------YVQPLLVDRQAQPVSDPREVFYPGCWVI 142 (216)
Q Consensus 75 ~~~~~k~plrDGD~~~~~~~~~~~~~e~~~g~~~i~a~~k------------~~kP~ivD~~~~~i~d~~~~iySGs~~k 142 (216)
.....+.++++++... +++++++|.++|++++| +++|.|||++++||++. +.|||||++|
T Consensus 79 k~~~~k~~~~~~~~~~-------p~~~e~~G~~~fk~K~Ka~~~~~k~g~~~~~~P~v~D~~~~~l~~~-~~i~~Gs~~~ 150 (206)
T 1je5_A 79 AVARGKKPLKPYEGDM-------PFFDNGDGTTTFKFKCYASFQDKKTKETKHINLVVVDSKGKKMEDV-PIIGGGSKLK 150 (206)
T ss_dssp -------CCCCCBCCC-------SEEECSSSEEEEEEEEESEEECTTTCCEEECCCCEECTTSCBCSSC-CCCCTTCEEE
T ss_pred CCCCCCCCCCCCCCCC-------CCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCEEE
T ss_conf 4442335777765668-------8653658748999998667411556775555870796989898886-6035786899
Q ss_pred EEEEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCCCC
Q ss_conf 9999998640788531169997407997248755566665
Q gi|254780126|r 143 AKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASPKS 182 (216)
Q Consensus 143 v~~~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE~~GG~~~~ 182 (216)
|+++++||.++++.|+||+|+|++||+|+++|+.||+..+
T Consensus 151 v~~~~~py~~~~~~g~Gvsl~L~~VQv~~~~e~~~g~~~~ 190 (206)
T 1je5_A 151 VKYSLVPYKWNTAVGASVKLQLESVMLVELATFGGGEDDW 190 (206)
T ss_dssp EEEEEEEECCCSSCCBEEEEEEEEEEEEECCC------CC
T ss_pred EEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCCCCCCC
T ss_conf 9999987886598863899883669998712567877666
No 2
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=32.31 E-value=17 Score=15.20 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=23.8
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH
Q ss_conf 6776899833127864112367886624799999637878
Q gi|254780126|r 4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADT 43 (216)
Q Consensus 4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~ 43 (216)
||..||-.||.|. ++..+-+ -..+|++.|-|-.-|.
T Consensus 28 ITk~GRrmFP~l~--~~vsGLd--p~~~Y~v~l~~~~~d~ 63 (203)
T 2x6u_A 28 ITKAGRRMFPSYK--VKVTGLN--PKTKYILLMDIVPADD 63 (203)
T ss_dssp CBSSCEECSSCCE--EEEESCC--SSSEEEEEEEEEEEEE
T ss_pred ECCCCEECCCCEE--EEEECCC--CCCCEEEEEEEEECCC
T ss_conf 8458741477529--9996888--6754689999898777
No 3
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=30.58 E-value=19 Score=14.90 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=24.5
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH
Q ss_conf 6776899833127864112367886624799999637878
Q gi|254780126|r 4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADT 43 (216)
Q Consensus 4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~ 43 (216)
||..||-.||.|. +...+=+ -..+|++.|-|..-|.
T Consensus 24 ITk~GRrmFP~l~--~~vsGLd--p~~~Y~v~l~~~~~D~ 59 (184)
T 1xbr_A 24 VTKNGRRMFPVLK--VSMSGLD--PNAMYTVLLDFVAADN 59 (184)
T ss_dssp CBTTCEECSSCCE--EEEECSC--TTSEEEEEEEEEESSS
T ss_pred EECCCCCCCCCEE--EEEECCC--CCCCEEEEEEEEECCC
T ss_conf 9158725687249--9997889--5645699999998567
No 4
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=22.72 E-value=14 Score=15.78 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=24.4
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH
Q ss_conf 6776899833127864112367886624799999637878
Q gi|254780126|r 4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADT 43 (216)
Q Consensus 4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~ 43 (216)
||..||-.||.|. ++..+-+. ..+|++.|-|..-|.
T Consensus 27 vTk~GRrmFP~l~--~~vsGLdp--~~~Y~v~l~~~~~D~ 62 (193)
T 1h6f_A 27 ITKSGRRMFPPFK--VRCSGLDK--KAKYILLMDIIAADD 62 (193)
T ss_dssp CCTTCBCCSSCCE--EEEESCCS--SSEEEEEEEEEEEEE
T ss_pred EECCCCCCCCCEE--EEEECCCC--CCEEEEEEEEEECCC
T ss_conf 9158732477128--99868895--751689999998748
No 5
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=21.03 E-value=35 Score=13.32 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=31.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 336776899833127864112367886624799999637878999999999999987
Q gi|254780126|r 2 QKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVT 58 (216)
Q Consensus 2 ~kvt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~~~~~~i~~AI~~a~~ 58 (216)
+-..+.||-+.+....-+.--.......||+.+.++++.++.+ ++-++|..+..
T Consensus 31 Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~leivv~d~~ve---~vv~aI~~aa~ 84 (119)
T 2j9c_A 31 TVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVD---NVIDIICENAR 84 (119)
T ss_dssp EEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHH---HHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCCEEECCCEEEECCCCEEEEEEEECHHHHH---HHHHHHHHHHC
T ss_conf 9996564178888521431412452205469999998878899---99999999835
No 6
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=16.08 E-value=45 Score=12.63 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=25.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12367886624799999637878999999999999987542
Q gi|254780126|r 21 MKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIF 61 (216)
Q Consensus 21 ~~~~~g~~~~kYs~~llipK~d~~~~~~i~~AI~~a~~~~~ 61 (216)
.-..+|+ |.+.|..||.+- .+.-|+-.|++++.+..
T Consensus 15 srt~dGd----YrL~itcp~Ke~-LlqSIEgmi~~~A~~vL 50 (76)
T 2rp4_A 15 SRTPDGD----YRLAITCPNKEW-LLQSIEGMIKEAAAEVL 50 (76)
T ss_dssp ECCTTTB----EEEEEEESCHHH-HHHHHHHHHHHHHHHHH
T ss_pred EECCCCC----EEEEEECCCHHH-HHHHHHHHHHHHHHHHH
T ss_conf 5436996----579987075999-99999999999999998
No 7
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=11.61 E-value=61 Score=11.84 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=31.8
Q ss_pred CEEECCCCCCCCCCC--CCCCCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEEE
Q ss_conf 836857874734767--74015407999999998640788531169997407997
Q gi|254780126|r 118 PLLVDRQAQPVSDPR--EVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFF 170 (216)
Q Consensus 118 P~ivD~~~~~i~d~~--~~iySGs~~kv~~~~~pY~~~~~~gkGVs~~L~~VQ~i 170 (216)
..|+|++++|..+.. ..||.-....-..++ | .+.++-..++++++.+-+-
T Consensus 5 V~V~d~~G~PV~gA~V~FkvyNYAEfy~va~~--~-TD~~G~a~lt~G~Gdmlv~ 56 (82)
T 3e8v_A 5 VLVTDAEGQPVADATVEFKVYNYAEFYTVATK--H-TDRSGHASLTAGKGDMLVW 56 (82)
T ss_dssp EEEECTTSCBCTTCEEEEEEEETTEEEEEEEE--E-CCTTSEEEEECCSEEEEEE
T ss_pred EEEECCCCCCCCCCEEEEEEECHHHEEEEEEE--E-ECCCCEEEEEECCCCEEEE
T ss_conf 99995899998999999999602752672012--8-8788609999558759999
No 8
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus P2} SCOP: d.58.51.1 PDB: 2qmu_B*
Probab=10.73 E-value=65 Score=11.66 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=19.3
Q ss_pred CCCEEEEEEEECCCCHHHH-HHHHHHHHHHHH
Q ss_conf 6624799999637878999-999999999987
Q gi|254780126|r 28 SVEHYGCDIVFPKADTKQI-NAVEACLKTAVT 58 (216)
Q Consensus 28 ~~~kYs~~llipK~d~~~~-~~i~~AI~~a~~ 58 (216)
+.|+|.+++.-+ |.++. ..++++++.+.+
T Consensus 50 gaP~Yri~v~a~--D~k~ae~~l~~a~~~i~~ 79 (93)
T 2qn6_B 50 GAPRYRVDVVGT--NPKEASEALNQIISNLIK 79 (93)
T ss_dssp STTEEEEEEEES--CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEC--CHHHHHHHHHHHHHHHHH
T ss_conf 698189999937--999999999999999999
No 9
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repressor; NMR {Sulfolobus islandicus rod-shaped VIRUS1}
Probab=9.04 E-value=75 Score=11.27 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEECCCCHHHHH--------HHHHHHHHHHHH
Q ss_conf 866247999996378789999--------999999999875
Q gi|254780126|r 27 SSVEHYGCDIVFPKADTKQIN--------AVEACLKTAVTE 59 (216)
Q Consensus 27 ~~~~kYs~~llipK~d~~~~~--------~i~~AI~~a~~~ 59 (216)
+++.|-+--|.|||+-...++ +|..+|.+|+++
T Consensus 9 ~~~~K~~FGI~~~K~LKTRLKiYCA~N~~~i~~~I~EAi~E 49 (56)
T 2kel_A 9 KKKQKAVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKE 49 (56)
T ss_dssp --CCEEEEEEEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHEEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 76542346667164575565552123648799999999999
No 10
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=8.79 E-value=77 Score=11.21 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 368578747347677401540799999
Q gi|254780126|r 119 LLVDRQAQPVSDPREVFYPGCWVIAKL 145 (216)
Q Consensus 119 ~ivD~~~~~i~d~~~~iySGs~~kv~~ 145 (216)
.|+|+.|+|..+.+-....|..+|+++
T Consensus 10 ~IlDSRG~PTvEvev~~~~g~~gra~~ 36 (431)
T 2fym_A 10 EIIDSRGNPTVEAEVHLEGGFVGMAAA 36 (431)
T ss_dssp EEECTTSCEEEEEEEEETTSCEEEEEC
T ss_pred EEECCCCCCEEEEEEEECCCCEEEEEC
T ss_conf 997689982599999988997899966
Done!