RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780126|ref|YP_003064539.1| hypothetical protein
CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>gnl|CDD|39462 KOG4261, KOG4261, KOG4261, Talin [Cytoskeleton].
          Length = 1003

 Score = 28.5 bits (63), Expect = 1.4
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 174 ERWGASPKSDTSEFKDYGEEQDSDTSV 200
            RW ASPKS T +F DY   QD   SV
Sbjct: 355 RRWAASPKSFTLDFGDY---QDGYYSV 378


>gnl|CDD|144226 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This family
           contains metallopeptidases. It also contains
           non-peptidase homologues such as the N terminal domain
           of Spt16 which is a histone H3-H4 binding module.
          Length = 207

 Score = 27.2 bits (61), Expect = 3.2
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 26  GSSVEHYGCDI----VFPKADTKQ---INAVEACLKTAVTEIFPNVSPDAFLSAVRSKSE 78
           G+  + Y  DI    V  K   +Q     AV    + A+  + P V+     +A R   E
Sbjct: 82  GAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLE 141

Query: 79  SRG 81
             G
Sbjct: 142 EGG 144


>gnl|CDD|32037 COG1852, COG1852, Uncharacterized conserved protein [Function
           unknown].
          Length = 209

 Score = 27.2 bits (60), Expect = 3.7
 Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 24/94 (25%)

Query: 100 TQTYTDSVYISAKNKYVQPLLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKG 159
            +   D + I  KNK  +        +     R +  P C    K      +L P    G
Sbjct: 62  DEDLFDRIGIEVKNKAYE----KDFKKIPVGKRLLLLPHCLRNPKCE---AKLTP---TG 111

Query: 160 FSCTLTGVQFFKHDERWGASPKSDTSEFKDYGEE 193
           + C   G              K    E K+  E+
Sbjct: 112 YECKKCG--------------KCVIGEIKEIAEK 131


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,442,268
Number of extensions: 115069
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 8
Length of query: 216
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,318,927
Effective search space: 544184802
Effective search space used: 544184802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.0 bits)