RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780126|ref|YP_003064539.1| hypothetical protein
CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>gnl|CDD|151438 pfam10991, DUF2815, Protein of unknown function (DUF2815).  This is
           a phage related family of proteins with unknown
           function.
          Length = 181

 Score = 95.5 bits (238), Expect = 1e-20
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 16/193 (8%)

Query: 5   TVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIFPNV 64
           T   RLSY  L       + +G     Y    + PK+DT+ I A++A +K A  E +   
Sbjct: 5   TGNVRLSYANLFE--PKSIENGQGEPKYSASFIIPKSDTETIKAIKAAIKAAAEEGW--- 59

Query: 65  SPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLLVDRQ 124
                    +  +  +  LRDGD +     +       Y    +I+A +K  +PL+VDR 
Sbjct: 60  --GKKADGKKIPATLKTPLRDGDLERPFDDE------AYAGHYFINASSK-TRPLIVDRN 110

Query: 125 AQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASPKSDT 184
            +P++      Y GC+  A +N  AY  +    KG +  L  VQF +  E  G    +  
Sbjct: 111 VRPLALDEGEVYSGCYANASINFYAY--NNNGNKGIAAGLNNVQFVRDGEPLGGGRVAAE 168

Query: 185 SEFKDYGEEQDSD 197
            +F    +E + D
Sbjct: 169 DDFDALADEDEDD 181


>gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase.
          Length = 1084

 Score = 27.7 bits (62), Expect = 2.3
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 27  SSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIFPNVSPDAFLSAVRSKSESR 80
             ++ YG   VFP+ D  +  AV A              PD F    +SK+ ++
Sbjct: 107 REIQQYGNPPVFPEEDEDEAAAVAA---AKAEAEAAAAPPDKF-KGKKSKAVAK 156


>gnl|CDD|179442 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4;
           Provisional.
          Length = 525

 Score = 27.4 bits (61), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 120 LVDRQAQPVSDPREVFYPGCWVIAKLNIGAY 150
           LVD      ++PREVF   C ++  + IG Y
Sbjct: 457 LVD------AEPREVFIIACLLVPIIGIGLY 481


>gnl|CDD|152978 pfam12544, LAM_C, Lysine-2,3-aminomutase.  This domain family is
           found in bacteria, archaea and eukaryotes, and is
           typically between 111 and 127 amino acids in length. The
           family is found in association with pfam04055. LAM
           catalyses the interconversion of L-alpha-lysine and
           L-beta-lysine, which proceeds by migration of the amino
           group from C2 to C3 concomitant with cross-migration of
           the 3-pro-R hydrogen of L-alpha-lysine to the 2-pro-R
           position of L-beta-lysine.
          Length = 127

 Score = 27.0 bits (60), Expect = 4.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 75  SKSESRGVLRDGDAKIASSHKPENYT----QTYTDSVYISAKNKY 115
           S+S  + VLR+ +  I +  +PENY       Y   +Y   + KY
Sbjct: 36  SQSPDKVVLRNFEGVITTYPEPENYVPGRADDYFAEIYPLYEKKY 80


>gnl|CDD|177932 PLN02295, PLN02295, glycerol kinase.
          Length = 512

 Score = 26.2 bits (58), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 77  SESRGVLRDGDAKIASSHKPENYTQTY 103
           + +R ++ D DA+  +SH+ E +TQ Y
Sbjct: 10  TSTRFIIYDRDARPVASHQVE-FTQIY 35


>gnl|CDD|184601 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
          Length = 392

 Score = 25.8 bits (57), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 4   LTVKGRLSYPALDTKVRMKLPDGSS 28
           L +   LS P LD  V +K+P G++
Sbjct: 306 LALGSTLSVPTLDGPVGVKVPAGTA 330


>gnl|CDD|161913 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related
           uncharacterized proteins.  This model, eIF-2B_rel,
           describes half of a superfamily, where the other half
           consists of eukaryotic translation initiation factor 2B
           (eIF-2B) subunits alpha, beta, and delta. It is unclear
           whether the eIF-2B_rel set is monophyletic, or whether
           they are all more closely related to each other than to
           any eIF-2B subunit because the eIF-2B clade is highly
           derived. Members of this branch of the family are all
           uncharacterized with respect to function and are found
           in the Archaea, Bacteria, and Eukarya, although a number
           are described as putative translation intiation factor
           components. Proteins found by eIF-2B_rel include at
           least three clades, including a set of uncharacterized
           eukaryotic proteins, a set found in some but not all
           Archaea, and a set universal so far among the Archaea
           and closely related to several uncharacterized bacterial
           proteins.
          Length = 303

 Score = 25.9 bits (57), Expect = 9.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 130 DPREVFYPGCWVIAKLNIGAY 150
           DP EV   G   IA L +  Y
Sbjct: 259 DPEEVAQVGGVRIAPLGVKVY 279


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,322,147
Number of extensions: 190197
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 9
Length of query: 216
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 127
Effective length of database: 4,071,361
Effective search space: 517062847
Effective search space used: 517062847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.1 bits)