BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780126|ref|YP_003064539.1| hypothetical protein
CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 216

 Score =  449 bits (1155), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60
           MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI
Sbjct: 1   MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60

Query: 61  FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120
           FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL
Sbjct: 61  FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120

Query: 121 VDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP 180
           VDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP
Sbjct: 121 VDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP 180

Query: 181 KSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN 216
           KSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN
Sbjct: 181 KSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN 216


>gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 198

 Score =  134 bits (337), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 113/197 (57%), Gaps = 9/197 (4%)

Query: 1   MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60
           M K+ +KGRLSYP L  + R     G  V  Y  DI+F K D +Q + +E  ++ A  E 
Sbjct: 1   MAKVLIKGRLSYPQLH-EPRAYGDKGDEV--YSADILFSKTDNEQCDKLEQAIREAGEEK 57

Query: 61  FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120
           F   +  A +   R K   R  L+DGD KI++S KPE Y + Y    YI+ KNK V+P L
Sbjct: 58  FGGSNMSALIE--RMKRTGRYPLKDGDQKISTSLKPEAY-EVYAGQYYITPKNKKVRPRL 114

Query: 121 VDRQAQPVSDP-REVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGAS 179
           VDR  Q V++  +EVFY GC V A +++ AY      TKG + TLTGVQF K D RWG  
Sbjct: 115 VDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQG--TKGVTFTLTGVQFVKDDTRWGGQ 172

Query: 180 PKSDTSEFKDYGEEQDS 196
            ++ +S+F+ Y EE  S
Sbjct: 173 LRASSSDFESYEEETAS 189


>gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 298

 Score = 22.3 bits (46), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 82  VLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL----VDRQAQ 126
           VL +GD  + + +K  NY++ ++    ++ K+  V+ L+    +D+  Q
Sbjct: 250 VLSEGDYTVIARNKERNYSREFS---VLTGKSTIVEVLMRQKRMDKNGQ 295


>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score = 22.3 bits (46), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 148 GAYELDPYKTKGFSCTLTG 166
           G  +L+P+  K FS  +TG
Sbjct: 294 GINDLEPFVAKDFSAVITG 312


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.130    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,721
Number of Sequences: 1233
Number of extensions: 4966
Number of successful extensions: 12
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 216
length of database: 328,796
effective HSP length: 70
effective length of query: 146
effective length of database: 242,486
effective search space: 35402956
effective search space used: 35402956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 36 (18.5 bits)