BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62] (216 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 449 bits (1155), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60 MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI Sbjct: 1 MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60 Query: 61 FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120 FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL Sbjct: 61 FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120 Query: 121 VDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP 180 VDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP Sbjct: 121 VDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGASP 180 Query: 181 KSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN 216 KSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN Sbjct: 181 KSDTSEFKDYGEEQDSDTSVSNFASAEVDSDALPWN 216 >gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62] Length = 198 Score = 134 bits (337), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 113/197 (57%), Gaps = 9/197 (4%) Query: 1 MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60 M K+ +KGRLSYP L + R G V Y DI+F K D +Q + +E ++ A E Sbjct: 1 MAKVLIKGRLSYPQLH-EPRAYGDKGDEV--YSADILFSKTDNEQCDKLEQAIREAGEEK 57 Query: 61 FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120 F + A + R K R L+DGD KI++S KPE Y + Y YI+ KNK V+P L Sbjct: 58 FGGSNMSALIE--RMKRTGRYPLKDGDQKISTSLKPEAY-EVYAGQYYITPKNKKVRPRL 114 Query: 121 VDRQAQPVSDP-REVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGAS 179 VDR Q V++ +EVFY GC V A +++ AY TKG + TLTGVQF K D RWG Sbjct: 115 VDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQG--TKGVTFTLTGVQFVKDDTRWGGQ 172 Query: 180 PKSDTSEFKDYGEEQDS 196 ++ +S+F+ Y EE S Sbjct: 173 LRASSSDFESYEEETAS 189 >gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 22.3 bits (46), Expect = 6.0, Method: Compositional matrix adjust. Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 7/49 (14%) Query: 82 VLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL----VDRQAQ 126 VL +GD + + +K NY++ ++ ++ K+ V+ L+ +D+ Q Sbjct: 250 VLSEGDYTVIARNKERNYSREFS---VLTGKSTIVEVLMRQKRMDKNGQ 295 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 22.3 bits (46), Expect = 6.2, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 148 GAYELDPYKTKGFSCTLTG 166 G +L+P+ K FS +TG Sbjct: 294 GINDLEPFVAKDFSAVITG 312 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.130 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,721 Number of Sequences: 1233 Number of extensions: 4966 Number of successful extensions: 12 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 6 length of query: 216 length of database: 328,796 effective HSP length: 70 effective length of query: 146 effective length of database: 242,486 effective search space: 35402956 effective search space used: 35402956 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 36 (18.5 bits)