HHsearch alignment for GI: 254780127 and conserved domain: COG0417
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].
Probab=97.68 E-value=0.0023 Score=40.50 Aligned_cols=178 Identities=19% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEE------EE------EE-CCCCCHHHHHHHHHHC--CCC
Q ss_conf 978999804067887000460000268829999999838228------99------97-8884221799999864--889
Q gi|254780127|r 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV------KL------WD-RTEQSAMPSDLLQYLR--DET 65 (675)
Q Consensus 1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~------~~------~d-~~~~~~~~~~l~~~L~--~~~ 65 (675)
T Consensus 154 l~~la~DiE~~~~~~~~~~~-----~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~e~e~l~~~~~~i~~~dPd 228 (792)
T COG0417 154 LRVLAFDIETLSEPGKFPDG-----EKDPIIMISYAIEAEGGLIEVFIYTSGEGFSVEVVISEAELLERFVELIREYDPD 228 (792)
T ss_pred CCEEEEEEEECCCCCCCCCC-----CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 75479950310577788987-----7786269999704677764443223567763487258799999999998502989
Q ss_pred CEEEEEEHH-HHHHHHHHH---CCCCCCC-------------------CCEEEHHHHHH--HHC-CCCCHHHHHHHHCCC
Q ss_conf 819986307-759999986---2998786-------------------50454588999--858-899978999980889
Q gi|254780127|r 66 VMCVAHNSL-FERILFKKT---LGIDIPS-------------------KRWICTSVLAR--TNG-LPSSLKNACLALNFS 119 (675)
Q Consensus 66 ~~kv~HNa~-FD~~vL~~~---lGi~i~~-------------------~~~~DTmi~A~--~l~-~p~sL~~la~~lgl~ 119 (675)
T Consensus 229 VI-vgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~~Gr~~iDl~~~~~~~~~~~~~ysl~~v~~~~l~~ 307 (792)
T COG0417 229 VI-VGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQVGRLHIDLYPALRRRPLNLKSYSLEAVSEALLGE 307 (792)
T ss_pred EE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHCCCCCCCEEHHHHHHHHCCC
T ss_conf 99-98367777738999999981998511356653200212544557716741066542032355632434677664133
Q ss_pred CCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCE
Q ss_conf 86527663765766410023320134531125876899989887753999999998720021431017899998751684
Q gi|254780127|r 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 (675)
Q Consensus 120 ~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~~~~~E~~l~~~~~~me~~Gi 199 (675)
T Consensus 308 ~-k~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~-------~~~e~s~vsg~ 365 (792)
T COG0417 308 G-KREDIP------YDSM--------EEIWPDWADSKLRLLLYNLSDADLVLRILLKNELLP-------LLIELSRVSGL 365 (792)
T ss_pred C-CHHCCC------CCHH--------HHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHCC
T ss_conf 5-220056------2013--------330423551076888834107889999986666789-------99999998498
Q ss_pred ECCHHHH
Q ss_conf 3088999
Q gi|254780127|r 200 RIDLDLV 206 (675)
Q Consensus 200 ~vD~e~l 206 (675)
T Consensus 366 ~~~~~~~ 372 (792)
T COG0417 366 PLDDVTR 372 (792)
T ss_pred CHHHHHH
T ss_conf 7999861