HHsearch alignment for GI: 254780127 and conserved domain: COG0749
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=767.94 Aligned_cols=534 Identities=21% Similarity=0.231 Sum_probs=435.4
Q ss_pred EEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCC---CHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
Q ss_conf 99980406788700046000026882999999983822899978884---221799999864889819986307759999
Q gi|254780127|r 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILF 80 (675)
Q Consensus 4 l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~---~~~~~~l~~~L~~~~~~kv~HNa~FD~~vL 80 (675)
T Consensus 25 ~a~~~et~~l--------~~~--~~~lvg~s~~~~~-~~~yi~~~~~~~~~~~~~~l~~~l~~~~~~kv~~~~K~d~~~l 93 (593)
T COG0749 25 IAFDTETDGL--------DPH--GADLVGLSVASEE-EAAYIPLLHGPEQLNVLAALKPLLEDEGIKKVGQNLKYDYKVL 93 (593)
T ss_pred CCEECCCCCC--------CCC--CCCEEEEEEECCC-CCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHH
T ss_conf 1010001456--------755--5874678862365-4236751366555514899999863754103213413669999
Q ss_pred HHHCCCCCCCCCEEEHHHHHHHHCCC---CCHHHHHHHH-CCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 98629987865045458899985889---9978999980-8898652766376576641002332013453112587689
Q gi|254780127|r 81 KKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 (675)
Q Consensus 81 ~~~lGi~i~~~~~~DTmi~A~~l~~p---~sL~~la~~l-gl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~ 156 (675)
T Consensus 94 ~~~-Gi~-~-~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~~~~~~~i~~kg~~~---------------~~~~~~~~ 155 (593)
T COG0749 94 ANL-GIE-P-GVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLETITFEDIAGKGKKQ---------------LTFADVKL 155 (593)
T ss_pred HHC-CCC-C-CCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCC---------------CCCCCCHH
T ss_conf 973-976-5-65178999996148676757778999982587740248763254456---------------76100147
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99898877539999999987200-----------2143101789999875168430889999999999999999999998
Q gi|254780127|r 157 QLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 (675)
Q Consensus 157 ~~~~~Ya~~Dv~~~~~L~~~L~~-----------~~~~E~~l~~~~~~me~~Gi~vD~e~l~~~~~~~~~~~~~~~~~i~ 225 (675)
T Consensus 156 ~~~~~y~a~~a~~~~~L~~~l~~~l~~~~~L~~l~~~iE~Pl~~VLa~ME~~Gi~vD~~~L~~l~~el~~~l~~le~eiy 235 (593)
T COG0749 156 EKATEYAAEDADATLRLESILEPELLKTPVLLELYEEIEMPLVRVLARMERNGIKVDVQYLKELSKELGCELAELEEEIY 235 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78888788888999999999998763104699999997540899999868628564299999999999999999999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCCCC--CCCC---HHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6305766888856889999999728999--8889---658899997448-985489999999997543000356688730
Q gi|254780127|r 226 KLTDGIIRSSRQTYALRMYLFLITGIDL--VDMS---EGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAV 299 (675)
Q Consensus 226 ~~~g~~~~n~~S~~ql~~~L~~~~g~~~--~~~~---k~~~~~~l~~~~-~~~~~~~ll~~r~~~~~~~~~~~~~l~~~~ 299 (675)
T Consensus 236 ~laG~~F-Ni~SPKQL~~ILfeKl~Lp~~~kKtktG~yST~~~vLe~L~~~h~i~~~iL~~Rql~KLks-TY~d~L~~~i 313 (593)
T COG0749 236 ELAGEEF-NINSPKQLGEILFEKLGLPPGLKKTKTGNYSTDAEVLEKLADDHPLPKLILEYRQLAKLKS-TYTDGLPKLI 313 (593)
T ss_pred HHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHCCHHHH
T ss_conf 9826857-8997789999988851898555545789976279999986524873899999987888877-7640228751
Q ss_pred CCC-CCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEECCCCCEEEE
Q ss_conf 568-8452200211322100111068885547777665234565443102444554443221013212147699878999
Q gi|254780127|r 300 SSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 (675)
Q Consensus 300 ~~d-GRih~~~~~~gAt~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~~f~a~~G~~lv~ 378 (675)
T Consensus 314 ~~~t~RIHTsf~Q~~-t~TGRLSSsdPNLQNIP------------------------iRse~Gr~IR~aFva~~g~~~i~ 368 (593)
T COG0749 314 NPDTGRIHTSFNQTG-TATGRLSSSDPNLQNIP------------------------IRSEEGRKIRKAFVAEKGYTLIS 368 (593)
T ss_pred CCCCCCCCCCHHHHH-HHHHCCCCCCCCCCCCC------------------------CCCHHHHHHHHCEECCCCCEEEE
T ss_conf 888993276168777-77503357999755677------------------------67776786664055799986887
Q ss_pred EECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 73354850588662287678665404441000015776087511057022100642100133078877898878870888
Q gi|254780127|r 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 (675)
Q Consensus 379 aDySqiElRvlA~ls~d~~li~~f~~g~D~h~~tA~~~~~~~~~~v~~~~R~~aK~~~~gl~YG~G~~~l~~~~~~~G~~ 458 (675)
T Consensus 369 aDYSQIELRilAHls~D~~Ll~AF~~g~DiH~~TA~~vFgv~~~~Vt~e~Rr~AKaINFGiiYG~safgLa~---~---- 441 (593)
T COG0749 369 ADYSQIELRILAHLSQDEGLLRAFTEGEDIHTATAAEVFGVPIEEVTSEQRRKAKAINFGLIYGMSAFGLAQ---Q---- 441 (593)
T ss_pred ECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCEEECCCHHHHHH---H----
T ss_conf 015799999999861889999988658637789999994998233899987565530354143451334798---7----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 64036666656667654788999999999875111010310889788999999867307899999999999996337214
Q gi|254780127|r 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 (675)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~ 538 (675)
T Consensus 442 -------------------------------------L~I~~~eA~~~I~~YF~rypgv~~ym~~~~~~ar~---~G--- 478 (593)
T COG0749 442 -------------------------------------LGIPRKEAKEYIDRYFERYPGVKEYMERTKEEARE---DG--- 478 (593)
T ss_pred -------------------------------------CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---CC---
T ss_conf -------------------------------------49886888999999998686899999999999997---49---
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20132223443212445641122463113102452012332031001235776533557776747989999999999999
Q gi|254780127|r 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 (675)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~l~i~~psGR~l~~~~~~~~~~~~~~~~~~~~r~~~~g~k~~n~~iQgtAaDi~k~am~~l~ 618 (675)
T Consensus 479 --------------------yV~Tl~gRRry~p~i~s~n~~~---R~~aER~------AiNaPIQGTAADiiK~AMI~vd 529 (593)
T COG0749 479 --------------------YVETLFGRRRYLPDINSSNRVV---RAAAERA------AINAPIQGTAADIIKLAMIKVD 529 (593)
T ss_pred --------------------CEEECCCCCCCCCCCCCCCHHH---HHHHHHH------HHCCCCCCCHHHHHHHHHHHHH
T ss_conf --------------------3541026602486210177888---8788898------8357674448999999998679
Q ss_pred H----C--CCCEEEEECCEEEEECCCCHHHHHHH-HHHHHCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 6----7--98189995358999678478999999-9998467630216984157303114631
Q gi|254780127|r 619 K----N--GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 (675)
Q Consensus 619 ~----~--g~~ivl~VHDElv~evp~~~~~~~~~-i~~~M~~~p~wa~~~pl~a~~~~~~~y~ 674 (675)
T Consensus 530 ~~l~~~~~~~rllLQVHDELvfEv~~~e~e~~~~~v~~~Me~a~~--L~VPL~vdv~~g~nW~ 590 (593)
T COG0749 530 KALKEEKLKARLLLQVHDELVFEVPKEELEEVKKLLKAIMENAVN--LSVPLEVDVGIGKNWD 590 (593)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCHH
T ss_conf 998634321456775545564117686899999999999987650--4786698617776834