HHsearch alignment for GI: 254780127 and conserved domain: COG2176
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=98.46 E-value=5.7e-07 Score=64.27 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=44.1
Q ss_pred CCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHHCCCC
Q ss_conf 89819986307759999986---2998786504545889998588---999789999808898
Q gi|254780127|r 64 ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSE 120 (675)
Q Consensus 64 ~~~~kv~HNa~FD~~vL~~~---lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~~lgl~~ 120 (675)
T Consensus 500 ~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~l 562 (1444)
T COG2176 500 GDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKLGVEL 562 (1444)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHCCCH
T ss_conf 485899616755645788889983885102750119999987574543246677888748637