HHsearch alignment for GI: 254780127 and conserved domain: COG3359
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair].
Probab=98.02 E-value=0.00024 Score=46.88 Aligned_cols=156 Identities=17% Similarity=0.067 Sum_probs=91.9
Q ss_pred EEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEE--CCCCCH-HHHHHHHHHCCC-CCEEEEEEH-HHHH
Q ss_conf 89998040678870004600002688299999998382289997--888422-179999986488-981998630-7759
Q gi|254780127|r 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--RTEQSA-MPSDLLQYLRDE-TVMCVAHNS-LFER 77 (675)
Q Consensus 3 ~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d--~~~~~~-~~~~l~~~L~~~-~~~kv~HNa-~FD~ 77 (675)
T Consensus 100 ~~FFDiETT--------GL~~--ag~~I~~~g~a~~~~~~~~Vrq~~lp~p~~E~avle~fl~~~~~~~lvsfNGkaFD~ 169 (278)
T COG3359 100 VAFFDIETT--------GLDR--AGNTITLVGGARGVDDTMHVRQHFLPAPEEEVAVLENFLHDPDFNMLVSFNGKAFDI 169 (278)
T ss_pred EEEEEEECC--------CCCC--CCCEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 589963314--------6688--898599998887357569997512798413568999975389845599746832670
Q ss_pred HHHHHHC--CCCCCCCC-EEEHHHHHHHHC----CCCCHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999862--99878650-454588999858----8999789999808898652766376576641002332013453112
Q gi|254780127|r 78 ILFKKTL--GIDIPSKR-WICTSVLARTNG----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 (675)
Q Consensus 78 ~vL~~~l--Gi~i~~~~-~~DTmi~A~~l~----~p~sL~~la~~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~ 150 (675)
T Consensus 170 PfikR~v~~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr~LGi~R~--edtdG~~~p~---------lyr~~~~~ 238 (278)
T COG3359 170 PFIKRMVRDRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVERILGIRRE--EDTDGYDGPE---------LYRLYRRY 238 (278)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC--CCCCCCCHHH---------HHHHHHHC
T ss_conf 899998751644476666312210344531202878881367888575501--1589850199---------99999870
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 58768999898877539999999987200
Q gi|254780127|r 151 NHVQAWQLFGEYCKRDVEATRELFKRLIP 179 (675)
Q Consensus 151 ~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~ 179 (675)
T Consensus 239 ~dp~ll~~l~~hN~eDvlnL~~i~~h~~~ 267 (278)
T COG3359 239 GDPGLLDGLVLHNREDVLNLPTIIKHVSK 267 (278)
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 98777789887069988759999999999