HHsearch alignment for GI: 254780127 and conserved domain: PRK05755
>PRK05755 DNA polymerase I; Provisional.
Probab=100.00 E-value=0 Score=870.24 Aligned_cols=537 Identities=21% Similarity=0.250 Sum_probs=450.9
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCCCH-----HHHHHHHHHCCCCCEEEEEEHHHH
Q ss_conf 789998040678870004600002688299999998382289997888422-----179999986488981998630775
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-----MPSDLLQYLRDETVMCVAHNSLFE 76 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~~~-----~~~~l~~~L~~~~~~kv~HNa~FD 76 (675)
T Consensus 320 ~~va~dtEttsld~~----------~a~lVGis~s~~~g~a~YIPl~~~~~~~~~~vl~~Lk~lLed~~i~KIghNlK~d 389 (889)
T PRK05755 320 GLVAFDTETTSLDPM----------SANLVGLSFAVEEGEAAYIPLAHDDQLDRDDALAALKPLLEDPAIPKVGQNLKYD 389 (889)
T ss_pred CEEEEEEECCCCCCC----------CCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 849999841788756----------5762599998279968998444313368899999999997098872432031899
Q ss_pred HHHHHHHCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHH-HHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999862998786504545889998588---999789999-80889865276637657664100233201345311258
Q gi|254780127|r 77 RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 (675)
Q Consensus 77 ~~vL~~~lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~-~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~ 152 (675)
T Consensus 390 l~vL~~~-GI~l~g-~~fDTmLAaYLLdP~~~~~~Ld~La~~yL~~~~~~~eel~gkg~--------------~~~~~-- 451 (889)
T PRK05755 390 RHILANY-GIELRG-IAFDTMLASYLLDPGAGRHDLDSLAERYLGHKTISFEEVAGKGN--------------QLTFA-- 451 (889)
T ss_pred HHHHHHC-CEECCC-CCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCC--------------CCCCC--
T ss_conf 9999977-923577-63019999987478877677899999863234420343136565--------------56610--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7689998988775399999999872002----------143101789999875168430889999999999999999999
Q gi|254780127|r 153 VQAWQLFGEYCKRDVEATRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 (675)
Q Consensus 153 ~~~~~~~~~Ya~~Dv~~~~~L~~~L~~~----------~~~E~~l~~~~~~me~~Gi~vD~e~l~~~~~~~~~~~~~~~~ 222 (675)
T Consensus 452 ~v~~e~~~~YaaedA~~~~~L~~~L~~~L~~~~l~~Ly~~IE~PLi~VLa~ME~~GI~VD~~~L~~ls~el~~~l~~le~ 531 (889)
T PRK05755 452 QVALEEAAEYAAEDADVTLRLHQVLKPELEEEGLLELYEEIELPLVPVLARMERNGIKVDREYLEELSAELAQRLAELEQ 531 (889)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 07878999999998868999999999999860478899998751999999999608686699999999999999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 998630576688885688999999972899988896---588999974-4898548999999999754300035668873
Q gi|254780127|r 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH-SNITQLAKDLILNRLASSGSAILKLNTLSEA 298 (675)
Q Consensus 223 ~i~~~~g~~~~n~~S~~ql~~~L~~~~g~~~~~~~k---~~~~~~l~~-~~~~~~~~~ll~~r~~~~~~~~~~~~~l~~~ 298 (675)
T Consensus 532 ~I~~~aG~eF-NinSPKQL~~iLFekL~Lp~~KKTKtGySTd~~vLe~L~~~hpi~~~iLeyR~l~KL~s-TYvd~L~~~ 609 (889)
T PRK05755 532 EIYELAGEEF-NLNSPKQLGEILFEKLGLPVTKKTKTGYSTDAEVLEKLADDHPIPKKILEYRQLSKLKS-TYTDGLPKM 609 (889)
T ss_pred HHHHHCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_conf 9998749903-77998999999998539997887889887859999998750769999999977878888-898888752
Q ss_pred HCCC-CCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHEEEECCCCCEEE
Q ss_conf 0568-845220021132210011106888554777766523456544310244455444322101321214769987899
Q gi|254780127|r 299 VSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 (675)
Q Consensus 299 ~~~d-GRih~~~~~~gAt~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~~f~a~~G~~lv 377 (675)
T Consensus 610 i~~~tgRIHt~f~Q~~-t~TGRLSS~~PNLQNIP------------------------ir~e~Gr~IR~aFva~~g~~l~ 664 (889)
T PRK05755 610 INPDTGRVHTSFNQAV-TATGRLSSSDPNLQNIP------------------------IRTEEGRRIRQAFVAPEGYKLL 664 (889)
T ss_pred CCCCCCEEECCHHHHH-CCCCCCCCCCCCCCCCC------------------------CCCHHHHHHHHEEEECCCCEEE
T ss_conf 4788984611001110-32022247998534687------------------------7632304455227858998899
Q ss_pred EEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 97335485058866228767866540444100001577608751105702210064210013307887789887887088
Q gi|254780127|r 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 (675)
Q Consensus 378 ~aDySqiElRvlA~ls~d~~li~~f~~g~D~h~~tA~~~~~~~~~~v~~~~R~~aK~~~~gl~YG~G~~~l~~~~~~~G~ 457 (675)
T Consensus 665 saDYSQIELRilAh~S~D~~li~af~~g~DiH~~tA~~vf~v~~~~vt~~~R~~AK~vnfGiiYG~s~~gLs~------- 737 (889)
T PRK05755 665 SADYSQIELRILAHLSGDEGLIEAFAEGEDIHTATASEVFGVPLEEVTSEQRRRAKAINFGLIYGMSAFGLAR------- 737 (889)
T ss_pred EECHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHEEEHHHHCCCHHHHHH-------
T ss_conf 9512089999999980899999998559986899999993999001899998662613221444668778998-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 86403666665666765478899999999987511101031088978899999986730789999999999999633721
Q gi|254780127|r 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 (675)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~ 537 (675)
T Consensus 738 -------------------------------------~l~is~~eA~~~i~~yf~~yp~v~~~~~~~~~~a~~---~G-- 775 (889)
T PRK05755 738 -------------------------------------QLGISRKEAKEYIDRYFERYPGVKEYMEETVAQAKE---KG-- 775 (889)
T ss_pred -------------------------------------HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC--
T ss_conf -------------------------------------819999999999999999681099999999999997---79--
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42013222344321244564112246311310245201233203100123577653355777674798999999999999
Q gi|254780127|r 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 (675)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~l~i~~psGR~l~~~~~~~~~~~~~~~~~~~~r~~~~g~k~~n~~iQgtAaDi~k~am~~l 617 (675)
T Consensus 776 ---------------------yv~Tl~gRrr~~p~i~s~n~~~r---~~~eR~------AiN~pIQGsAADiiK~AMi~v 825 (889)
T PRK05755 776 ---------------------YVETLFGRRRYLPDINSSNGARR---AFAERA------AINAPIQGSAADIIKIAMIRV 825 (889)
T ss_pred ---------------------CEECCCCCEEECCCCCCCCHHHH---HHHHHH------HHCCCCCHHHHHHHHHHHHHH
T ss_conf ---------------------77787787052786778998899---899999------967565556999999999999
Q ss_pred HH-----CCCCEEEEECCEEEEECCCCHHHHHHH-HHHHHCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 96-----798189995358999678478999999-9998467630216984157303114631
Q gi|254780127|r 618 TK-----NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 (675)
Q Consensus 618 ~~-----~g~~ivl~VHDElv~evp~~~~~~~~~-i~~~M~~~p~wa~~~pl~a~~~~~~~y~ 674 (675)
T Consensus 826 ~~~l~~~~~~~~llQVHDEli~Ev~~~~~e~~~~~v~~~Me~a~~--l~VPl~v~~~~g~nW~ 886 (889)
T PRK05755 826 DDALKEGLKARMLLQVHDELVFEVPEDELEEVKKLVKEVMENAVE--LSVPLVVDVGVGDNWD 886 (889)
T ss_pred HHHHHHCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHCCEE--CCCCEEEECCCCCCHH
T ss_conf 999984778738998655777842788999999999999718500--7887586238168967