HHsearch alignment for GI: 254780127 and conserved domain: PRK06807
>PRK06807 DNA polymerase III subunit epsilon; Validated.
Probab=99.18 E-value=2.7e-09 Score=79.65 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=59.5
Q ss_pred CCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHHCCCCCCHHHHHCHHHHHHHHH
Q ss_conf 89819986307759999986---2998786504545889998588---99978999980889865276637657664100
Q gi|254780127|r 64 ETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 (675)
Q Consensus 64 ~~~~kv~HNa~FD~~vL~~~---lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~~lgl~~~~~kd~~gk~li~~~~~ 137 (675)
T Consensus 87 ~d~iLVAHNA~FD~~FL~~~L~r~gl~~~~n~~IDTL~LAR~l~P~L~NhKLnTVa~~LgI~l~---------------- 150 (313)
T PRK06807 87 HTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLS---------------- 150 (313)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCC----------------
T ss_conf 8998999553661999999999749988899877659999986478765667899998399834----------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 23320134531125876899989887753999999998720021
Q gi|254780127|r 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 (675)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~~~ 181 (675)
T Consensus 151 ----------------------HHrAldDA~acAeI~~k~~~~~ 172 (313)
T PRK06807 151 ----------------------SHNAFDDCITCAAVYQKCASIE 172 (313)
T ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----------------------3671778999999999999988