HHsearch alignment for GI: 254780127 and conserved domain: PRK07246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.06 E-value=7.5e-09 Score=76.73 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=70.0
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEE-EECCCEEE-EEE--CCCCCHHHHH---------------------
Q ss_conf 7899980406788700046000026882999999-98382289-997--8884221799---------------------
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVK-LWD--RTEQSAMPSD--------------------- 56 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~-a~~~~~~~-~~d--~~~~~~~~~~--------------------- 56 (675)
T Consensus 8 ~~~vvDlETTG--------~~~--~~-~Iiqi~~v~~~~~~i~~~f~t~vnP~~~ip~~I~~LTgI~~~~v~~ap~f~~v 76 (820)
T PRK07246 8 KYAVVDLEATG--------AGP--NA-SIIQVGIVIIQGNKIIDSYETDVNPHESLDEHIVHLTGITDKQLAQAPDFSQV 76 (820)
T ss_pred CEEEEEEECCC--------CCC--CC-CEEEEEEEEEECCEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCCHHHH
T ss_conf 18999988789--------899--98-77999999999999989987311889979978886469898998529998999
Q ss_pred ---HHHHHCCCCCEEEEEEHHHHHHHHHHHC---CCCCCCCCEEEHHHHHHHHC---CCCCHHHHHHHHCCCCC
Q ss_conf ---9998648898199863077599999862---99878650454588999858---89997899998088986
Q gi|254780127|r 57 ---LLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121 (675)
Q Consensus 57 ---l~~~L~~~~~~kv~HNa~FD~~vL~~~l---Gi~i~~~~~~DTmi~A~~l~---~p~sL~~la~~lgl~~~ 121 (675)
T Consensus 77 ~~~~~~~l--~~~~~VaHNv~FD~~fl~~~~~~~g~~~~-~~~~DTv~La~i~~P~~~~y~L~~L~~~l~~~~~ 147 (820)
T PRK07246 77 AHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELR-TPRVDTVELAQVFFPRLEKYSLSHLSRQLNIDLA 147 (820)
T ss_pred HHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf 99999996--79859983720169999999997589889-9826099999997798788888999997399999