HHsearch alignment for GI: 254780127 and conserved domain: PRK07942

>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=98.98  E-value=3.1e-07  Score=66.04  Aligned_cols=79  Identities=15%  Similarity=0.134  Sum_probs=56.3

Q ss_pred             CCCEEEEEEHHHHHHHHHHH---CCCC-CCCCCEEEHHHHHHHHCC----CCCHHHHHHHHCCCCCCHHHHHCHHHHHHH
Q ss_conf             89819986307759999986---2998-786504545889998588----999789999808898652766376576641
Q gi|254780127|r   64 ETVMCVAHNSLFERILFKKT---LGID-IPSKRWICTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARF  135 (675)
Q Consensus        64 ~~~~kv~HNa~FD~~vL~~~---lGi~-i~~~~~~DTmi~A~~l~~----p~sL~~la~~lgl~~~~~kd~~gk~li~~~  135 (675)
T Consensus        92 ~g~~lVahNA~FDl~fL~~El~R~g~~~l~~~~viDtl~l~r~l~~~r~gkr~L~aL~~~ygv~l~~a------------  159 (234)
T PRK07942         92 AGVPVVVYNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKHVDRYRKGKRTLTALCEHYGVRLDNA------------  159 (234)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCC------------
T ss_conf             79879996707649999999998599967777556199988775147778888999999849988775------------


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             00233201345311258768999898877539999999987200
Q gi|254780127|r  136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP  179 (675)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~  179 (675)
T Consensus       160 -------------------------H~A~aDA~Ata~l~~~l~~  178 (234)
T PRK07942        160 -------------------------HDATADALAAARLAWALAR  178 (234)
T ss_pred             -------------------------CCCHHHHHHHHHHHHHHHH
T ss_conf             -------------------------5641528999999999998