HHsearch alignment for GI: 254780127 and conserved domain: PRK07942
>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=98.98 E-value=3.1e-07 Score=66.04 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=56.3
Q ss_pred CCCEEEEEEHHHHHHHHHHH---CCCC-CCCCCEEEHHHHHHHHCC----CCCHHHHHHHHCCCCCCHHHHHCHHHHHHH
Q ss_conf 89819986307759999986---2998-786504545889998588----999789999808898652766376576641
Q gi|254780127|r 64 ETVMCVAHNSLFERILFKKT---LGID-IPSKRWICTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARF 135 (675)
Q Consensus 64 ~~~~kv~HNa~FD~~vL~~~---lGi~-i~~~~~~DTmi~A~~l~~----p~sL~~la~~lgl~~~~~kd~~gk~li~~~ 135 (675)
T Consensus 92 ~g~~lVahNA~FDl~fL~~El~R~g~~~l~~~~viDtl~l~r~l~~~r~gkr~L~aL~~~ygv~l~~a------------ 159 (234)
T PRK07942 92 AGVPVVVYNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKHVDRYRKGKRTLTALCEHYGVRLDNA------------ 159 (234)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCC------------
T ss_conf 79879996707649999999998599967777556199988775147778888999999849988775------------
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00233201345311258768999898877539999999987200
Q gi|254780127|r 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 (675)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~ 179 (675)
T Consensus 160 -------------------------H~A~aDA~Ata~l~~~l~~ 178 (234)
T PRK07942 160 -------------------------HDATADALAAARLAWALAR 178 (234)
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHH
T ss_conf -------------------------5641528999999999998