HHsearch alignment for GI: 254780127 and conserved domain: PRK09182
>PRK09182 DNA polymerase III subunit epsilon; Validated.
Probab=98.19 E-value=5e-06 Score=58.08 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=54.5
Q ss_pred EEEEEECCCCCCCCCCCCCHHHCCC-CEEEEEEEEEC-CCEEEEE-E-----CCCCCHHHHH------------------
Q ss_conf 8999804067887000460000268-82999999983-8228999-7-----8884221799------------------
Q gi|254780127|r 3 KLFIDIETRSPQPLPKVGVWAYAEQ-AVITLCAYAWD-DEPVKLW-D-----RTEQSAMPSD------------------ 56 (675)
Q Consensus 3 ~l~lD~ET~s~~dl~~~Gl~~y~~~-~~I~~i~~a~~-~~~~~~~-d-----~~~~~~~~~~------------------ 56 (675)
T Consensus 39 g~~lD~ETTG--------l~~~~d~IIElg~v~f~~~~~G~i~~i~~~~~~~~dP~~pIp~~it~lTGItd~mV~Gq~id 110 (293)
T PRK09182 39 GVILDTETTG--------LDPRKDEIIEIGMVAFEYDDDGRIGDVVDTFGGLQQPSRPIPPEITRLTGITDEMVAGQTID 110 (293)
T ss_pred EEEEECCCCC--------CCCCCCEEEEEEEEEEEECCCCCEEEEECCEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCC
T ss_conf 9999530578--------89778779997689999869985877643231103899989987987518888996888279
Q ss_pred --HHHHHCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCEEEHHHHH-HH-HC-CCCCHHHHHHHHC
Q ss_conf --99986488981998630775999998629987865045458899-98-58-8999789999808
Q gi|254780127|r 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-RT-NG-LPSSLKNACLALN 117 (675)
Q Consensus 57 --l~~~L~~~~~~kv~HNa~FD~~vL~~~lGi~i~~~~~~DTmi~A-~~-l~-~p~sL~~la~~lg 117 (675)
T Consensus 111 ~~~V~~~~~~adliiAHNA~FDR~F~E~~~p~-f~~k~WaCS~~~IdW~~~Gf~s~kLeyL~~~~G 175 (293)
T PRK09182 111 PAEVDALIAPADLIIAHNAGFDRPFLERFSPV-FANKPWACSVSEIDWSARGFEGTKLGYLAGQAG 175 (293)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHCCC-CCCCCEEEECCCCCHHHCCCCCCCHHHHHHHCC
T ss_conf 99999986449899981775467789850953-258750531637970322877415999998609