HHsearch alignment for GI: 254780127 and conserved domain: PTZ00166
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional.
Probab=97.73 E-value=0.003 Score=39.65 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=61.1
Q ss_pred HHHHHHHHC--CCCCEEEEEEH-HHHHHHHHH---HCCCC----------------------------------CCCCCE
Q ss_conf 799999864--88981998630-775999998---62998----------------------------------786504
Q gi|254780127|r 54 PSDLLQYLR--DETVMCVAHNS-LFERILFKK---TLGID----------------------------------IPSKRW 93 (675)
Q Consensus 54 ~~~l~~~L~--~~~~~kv~HNa-~FD~~vL~~---~lGi~----------------------------------i~~~~~ 93 (675)
T Consensus 360 L~aF~~fi~~~DPDII-TGYNI~nFDlpYLl~Ra~~L~i~~f~~lgRlk~~~~~~~~~~~~s~a~G~~~~k~i~i~GRv~ 438 (1081)
T PTZ00166 360 LLAWNDFIIAVDPDFL-TGYNIINFDLPYLLNRATALNLKKFKFLTRIKSVKSTVKDSIFSSNQFGTHENKEINIEGRIL 438 (1081)
T ss_pred HHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCEEE
T ss_conf 9999999987099899-966878888899999999958864332361157765220265665555666550686757899
Q ss_pred EEHHHHHHH-HC-CCCCHHHHHHH-HCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 545889998-58-89997899998-0889865276637657664100233201345311258768999898877539999
Q gi|254780127|r 94 ICTSVLART-NG-LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 (675)
Q Consensus 94 ~DTmi~A~~-l~-~p~sL~~la~~-lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~ 170 (675)
T Consensus 439 ~Dl~~~v~r~~kL~SYkLntVs~~fLgeq----KeDV~~~~I~-------------~l~~~~~e~r~rla~YClkDa~L~ 501 (1081)
T PTZ00166 439 FDVYDLIRRDYKLKSYSLNYVSFEFLKEQ----KEDVHYSTIN-------------KLQNGNPEDRKRIASYCLKDSILP 501 (1081)
T ss_pred EEHHHHHHHHCCCCCCCHHHHHHHHHCCC----CCCCCHHHHH-------------HHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 64699998755878576888999981887----5337999999-------------998149378899999989989999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999872002
Q gi|254780127|r 171 RELFKRLIPL 180 (675)
Q Consensus 171 ~~L~~~L~~~ 180 (675)
T Consensus 502 lrL~~KL~~l 511 (1081)
T PTZ00166 502 LRLIDKLLLL 511 (1081)
T ss_pred HHHHHHHHHH
T ss_conf 9999999899