HHsearch alignment for GI: 254780127 and conserved domain: TIGR01388
>TIGR01388 rnd ribonuclease D; InterPro: IPR006292 These proteins represent ribonuclease D, a 3-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Members of this family are restricted to the Proteobacteria; Aquifex, Mycobacteria and eukaryotes. Ribonuclease D is not essential in Escherichia coli but is deleterious when overexpressed. The precise biological role of ribonuclease D is still unknown. ; GO: 0004540 ribonuclease activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.11 E-value=1.9e-09 Score=80.67 Aligned_cols=157 Identities=22% Similarity=0.180 Sum_probs=103.5
Q ss_pred EEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEE-CCC-CCHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
Q ss_conf 89998040678870004600002688299999998382289997-888-4221799999864889819986307759999
Q gi|254780127|r 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80 (675)
Q Consensus 3 ~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d-~~~-~~~~~~~l~~~L~~~~~~kv~HNa~FD~~vL 80 (675)
T Consensus 20 ~valDTEF~-----R~~T-F----wP~LgLiQ~a~-g~~~~LIDPL~~~~~~--~Pl~~lL~d~~v~KvlHAaseDlEvF 86 (374)
T TIGR01388 20 FVALDTEFV-----RERT-F----WPQLGLIQVAD-GEQLALIDPLVIDIDL--SPLLELLADESVVKVLHAASEDLEVF 86 (374)
T ss_pred EEECCCCEE-----CCCC-C----CHHHCCEECCC-CCEEEEECCCCCCCCH--HHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 374155411-----2653-2----02040031137-8756876588875234--79999973898158530450479999
Q ss_pred HHHCCCCCCCCCEEEHHHHHHHHCCCCCHHH--HH-HHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9862998786504545889998588999789--99-98088986527663765766410023320134531125876899
Q gi|254780127|r 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKN--AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 (675)
Q Consensus 81 ~~~lGi~i~~~~~~DTmi~A~~l~~p~sL~~--la-~~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (675)
T Consensus 87 ~~l~g~-lP-~PLfDTQi~Aa~~G~g~s~gY~~LV~~~~~v~LdKse~--------------------rtDW~~RP-Ltd 143 (374)
T TIGR01388 87 LNLFGV-LP-KPLFDTQIAAAFLGFGESMGYDKLVQEVLGVELDKSET--------------------RTDWLARP-LTD 143 (374)
T ss_pred HHHHCC-CC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHCEECCCCCC--------------------CCHHHCCC-CCH
T ss_conf 987057-98-88305889999836785210899999973703178887--------------------22210478-987
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 98988775399999999872002143101789999875
Q gi|254780127|r 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 (675)
Q Consensus 158 ~~~~Ya~~Dv~~~~~L~~~L~~~~~~E~~l~~~~~~me 195 (675)
T Consensus 144 ~Ql~YAaaDV~yL~~~y~~L~~~l~~~~R~~~l~ee~~ 181 (374)
T TIGR01388 144 KQLEYAAADVTYLLPLYEKLTERLAEEGRLAWLEEECE 181 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999999999988645999972059