HHsearch alignment for GI: 254780127 and conserved domain: TIGR01406

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit; InterPro: IPR006309 These represent DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease region as described in IPR006055 from INTERPRO. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are not included in this set of sequences, as they are smaller proteins.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=99.07  E-value=1.7e-09  Score=81.06  Aligned_cols=67  Identities=25%  Similarity=0.377  Sum_probs=49.8

Q ss_pred             HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CC---CC-C-CCCCEEEHHHHHHHHC--CCCCHHHHHHHHCCCCC
Q ss_conf             1799999864889819986307759999986---29---98-7-8650454588999858--89997899998088986
Q gi|254780127|r   53 MPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG---ID-I-PSKRWICTSVLARTNG--LPSSLKNACLALNFSEH  121 (675)
Q Consensus        53 ~~~~l~~~L~~~~~~kv~HNa~FD~~vL~~~---lG---i~-i-~~~~~~DTmi~A~~l~--~p~sL~~la~~lgl~~~  121 (675)
T Consensus        79 Ia~~Fl~Fi~~~--~LvIHNA~FD~gFlN~EL~~Lg~~~~~~~~~~~~~~DTL~mAR~~FPG~~~sLDALCkRf~vDns  155 (246)
T TIGR01406        79 IADEFLDFIKGS--ELVIHNAAFDVGFLNYELERLGLKEIKKISDFCRVIDTLAMARERFPGKRNSLDALCKRFKVDNS  155 (246)
T ss_pred             HHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
T ss_conf             899999984598--89997570216789999987287321000136678656899972378986646787743042500