>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .

Probab=98.80 E-value=3.7e-07 Score=65.52 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=71.7 Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCC-CEEEEEEEE-ECCCEEEEE---ECCCCCHHHH--------------------- Q ss_conf 78999804067887000460000268-829999999-838228999---7888422179--------------------- Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQ-AVITLCAYA-WDDEPVKLW---DRTEQSAMPS--------------------- 55 (675) Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~-~~I~~i~~a-~~~~~~~~~---d~~~~~~~~~--------------------- 55 (675) T Consensus 1 rYaVVDLEtTg~~~~----------~~d~IIqiGiV~v~DgeIv~~f~T~VNP~~~~pp~I~eLTGisd~~l~~AP~F~q 70 (944) T TIGR01407 1 RYAVVDLETTGTDSS----------EFDKIIQIGIVLVEDGEIVDTFATDVNPNEPIPPFIQELTGISDEQLKQAPYFSQ 70 (944) T ss_pred CEEEEEEEECCCCCC----------CCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCHHH T ss_conf 968998741688864----------5576689988998558143201267788987761145422877686404888879 Q ss_pred ---HHHHHHCCCCCEEEEEEHHHHHHHHHHHC---CCCCCCCCEEEHHHHHHHHC---CCCCHHHHHHHHCCCCC Q ss_conf ---99998648898199863077599999862---99878650454588999858---89997899998088986 Q gi|254780127|r 56 ---DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121 (675) Q Consensus 56 ---~l~~~L~~~~~~kv~HNa~FD~~vL~~~l---Gi~i~~~~~~DTmi~A~~l~---~p~sL~~la~~lgl~~~ 121 (675) T Consensus 71 VA~~i~~~l~--D~iFVAHNV~FD~nfL~k~l~~~G~~~~~~~~iDTVELa~if~PT~esY~Ls~L~E~LGl~h~ 143 (944) T TIGR01407 71 VAQEIYDLLE--DGIFVAHNVHFDLNFLAKELVDEGYEPLEVPRIDTVELARIFFPTEESYKLSELSEELGLEHE 143 (944) T ss_pred HHHHHHHHHC--CCEEEEECHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC T ss_conf 9999998742--972776101506789999998568974343520056799874674435561489997198714

HHsearch alignment for GI: 254780127 and conserved domain: TIGR01407