HHsearch alignment for GI: 254780127 and conserved domain: cd00007
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=99.80 E-value=4.8e-18 Score=137.56 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=105.9
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCC-CCHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
Q ss_conf 789998040678870004600002688299999998382289997888-4221799999864889819986307759999
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~-~~~~~~~l~~~L~~~~~~kv~HNa~FD~~vL 80 (675)
T Consensus 1 ~~ia~D~Et~~--------l~~~--~~~i~~iql~~~~~-~~yi~~~~~~~~~~~~l~~~l~~~~i~Kv~hn~k~D~~~L 69 (155)
T cd00007 1 KEVAFDTETTG--------LNYH--RGKLVGIQIATAGE-AAYIPDELELEEDLEALKELLEDEDITKVGHDAKFDLVVL 69 (155)
T ss_pred CEEEEECCCCC--------CCCC--CCCEEEEEEEECCC-EEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHH
T ss_conf 98999898799--------9778--88099999998993-5999814755246999999982999738987340009999
Q ss_pred HHHCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHH-HCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 9862998786504545889998588---9997899998-08898652766376576641002332013453112587689
Q gi|254780127|r 81 KKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 (675)
Q Consensus 81 ~~~lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~~-lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~ 156 (675)
T Consensus 70 ~~~-~~~~~-~~~~Dt~iaa~ll~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~---------------~-~~~~-~~l~ 130 (155)
T cd00007 70 ARD-GIELP-GNIFDTMLAAYLLNPGEGSHSLDDLAKEYLGIELDKDEQIYGKG---------------A-KTFA-RPLS 130 (155)
T ss_pred HHC-CCCCC-CCEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCC---------------C-CCCC-CCCH
T ss_conf 862-86013-50114999999847785523699999998398767488861776---------------5-4444-7998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99898877539999999987200
Q gi|254780127|r 157 QLFGEYCKRDVEATRELFKRLIP 179 (675)
Q Consensus 157 ~~~~~Ya~~Dv~~~~~L~~~L~~ 179 (675)
T Consensus 131 ~~~~~YAa~D~~~~~~l~~~l~~ 153 (155)
T cd00007 131 EELLEYAAEDADALLRLYEKLLE 153 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999996