HHsearch alignment for GI: 254780127 and conserved domain: cd06125

>cd06125 DnaQ_like_exo The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy or DEDDh exonucleases depending on the variation of motif
Probab=98.62  E-value=5.5e-07  Score=64.41  Aligned_cols=89  Identities=26%  Similarity=0.264  Sum_probs=56.6

Q ss_pred             EEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEEC-CCEEEEEECCCCC------------------------HHHHHHH
Q ss_conf             99980406788700046000026882999999983-8228999788842------------------------2179999
Q gi|254780127|r    4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQS------------------------AMPSDLL   58 (675)
Q Consensus         4 l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~-~~~~~~~d~~~~~------------------------~~~~~l~   58 (675)
T Consensus         1 Vv~D~ETTG--------l~~-~~~d~Iiei~~v~~~~~~~~~~~v~p~~~i~~~~~~i~gi~~~~v~~~p~~~~~~~~~~   71 (130)
T cd06125           1 VAFDIETTG--------LNG-NARDEIIEIALVVVHIGEKFVFDVKPDDLIDPYAFTISGITDEVVERAATEAELLIELL   71 (130)
T ss_pred             CEEEEECCC--------CCC-CCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             989801899--------699-99985899999997189889999799998997794103759999833060899999999


Q ss_pred             HHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCC--CCEEEHHHHHH
Q ss_conf             9864889819986307759999986---2998786--50454588999
Q gi|254780127|r   59 QYLRDETVMCVAHNSLFERILFKKT---LGIDIPS--KRWICTSVLAR  101 (675)
Q Consensus        59 ~~L~~~~~~kv~HNa~FD~~vL~~~---lGi~i~~--~~~~DTmi~A~  101 (675)
T Consensus        72 ~f~~~~~~ilVgHN~~FD~~fL~~~~~r~g~~~~~~~~~~iDTl~lar  119 (130)
T cd06125          72 AFLRDKDDILVGHNISFDLPYLLNRAAELGIPYPILGRIVFDTLALAL  119 (130)
T ss_pred             HHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHH
T ss_conf             997699999999194774999999999849999878996868609842