HHsearch alignment for GI: 254780127 and conserved domain: cd06141
>cd06141 WRN_exo WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=99.44 E-value=8.8e-12 Score=96.13 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=105.5
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
Q ss_conf 78999804067887000460000268829999999838228999788842217999998648898199863077599999
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~~~~~~~l~~~L~~~~~~kv~HNa~FD~~vL~ 81 (675)
T Consensus 19 ~vvG~D~Ew~~~~~--~-~-----~~~~~aliQlat~-~~~~l~d~~~~~~~~~~L~~lL~~~~i~Kvg~~~~~D~~~L~ 89 (168)
T cd06141 19 KVVGFDLEWRPSFR--K-G-----KRNKVALLQLASE-SRCLLFQLSHMDKLPPSLKQLLEDPSILKVGVGIKGDARKLR 89 (168)
T ss_pred CEEEEECEECCCCC--C-C-----CCCCCEEEEEECC-CCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
T ss_conf 88999664558777--7-8-----8897159998249-965999740331204999999759980799963188999998
Q ss_pred HHCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHH-HHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 862998786504545889998588---999789999-8088986527663765766410023320134531125876899
Q gi|254780127|r 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 (675)
Q Consensus 82 ~~lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~-~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (675)
T Consensus 90 ~~~g~~~--~~~~Dl~~~a~~~~~~~~~~sL~~l~~~~lg~~l~K~k-----~~--------q-----~SdW~~rp-Ls~ 148 (168)
T cd06141 90 RDFGIEV--RGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKDK-----KV--------R-----CSNWEARP-LSK 148 (168)
T ss_pred HHCCCCC--CCEEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC-----CC--------C-----CCCCCCCC-CCH
T ss_conf 7445024--87656999999857777763299999998396215466-----52--------0-----38889999-999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98988775399999999872
Q gi|254780127|r 158 LFGEYCKRDVEATRELFKRL 177 (675)
Q Consensus 158 ~~~~Ya~~Dv~~~~~L~~~L 177 (675)
T Consensus 149 ~Qi~YAA~Da~~~~~l~~~L 168 (168)
T cd06141 149 EQILYAATDAYASLELYRKL 168 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999739