HHsearch alignment for GI: 254780127 and conserved domain: cd06141

>cd06141 WRN_exo WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=99.44  E-value=8.8e-12  Score=96.13  Aligned_cols=146  Identities=21%  Similarity=0.226  Sum_probs=105.5

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
Q ss_conf             78999804067887000460000268829999999838228999788842217999998648898199863077599999
Q gi|254780127|r    2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK   81 (675)
Q Consensus         2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~~~~~~~l~~~L~~~~~~kv~HNa~FD~~vL~   81 (675)
T Consensus        19 ~vvG~D~Ew~~~~~--~-~-----~~~~~aliQlat~-~~~~l~d~~~~~~~~~~L~~lL~~~~i~Kvg~~~~~D~~~L~   89 (168)
T cd06141          19 KVVGFDLEWRPSFR--K-G-----KRNKVALLQLASE-SRCLLFQLSHMDKLPPSLKQLLEDPSILKVGVGIKGDARKLR   89 (168)
T ss_pred             CEEEEECEECCCCC--C-C-----CCCCCEEEEEECC-CCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
T ss_conf             88999664558777--7-8-----8897159998249-965999740331204999999759980799963188999998


Q ss_pred             HHCCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHH-HHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             862998786504545889998588---999789999-8088986527663765766410023320134531125876899
Q gi|254780127|r   82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ  157 (675)
Q Consensus        82 ~~lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~-~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~  157 (675)
T Consensus        90 ~~~g~~~--~~~~Dl~~~a~~~~~~~~~~sL~~l~~~~lg~~l~K~k-----~~--------q-----~SdW~~rp-Ls~  148 (168)
T cd06141          90 RDFGIEV--RGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKDK-----KV--------R-----CSNWEARP-LSK  148 (168)
T ss_pred             HHCCCCC--CCEEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC-----CC--------C-----CCCCCCCC-CCH
T ss_conf             7445024--87656999999857777763299999998396215466-----52--------0-----38889999-999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             98988775399999999872
Q gi|254780127|r  158 LFGEYCKRDVEATRELFKRL  177 (675)
Q Consensus       158 ~~~~Ya~~Dv~~~~~L~~~L  177 (675)
T Consensus       149 ~Qi~YAA~Da~~~~~l~~~L  168 (168)
T cd06141         149 EQILYAATDAYASLELYRKL  168 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999739