HHsearch alignment for GI: 254780127 and conserved domain: cd06146
>cd06146 mut-7_like_exo The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=99.30 E-value=3.1e-10 Score=85.86 Aligned_cols=146 Identities=14% Similarity=0.031 Sum_probs=99.0
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCC-----CHHHHHHHHHHCCCCCEEEEEEHHHH
Q ss_conf 7899980406788700046000026882999999983822899978884-----22179999986488981998630775
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLLQYLRDETVMCVAHNSLFE 76 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~-----~~~~~~l~~~L~~~~~~kv~HNa~FD 76 (675)
T Consensus 23 ~vvg~D~Ew~~~~------~~--~~~~~vaLiQlat~~-~~~liD~~~~~~~~~~~~~~~L~~ll~~~~i~Kvg~~~~~D 93 (191)
T cd06146 23 RVVGIDSEWKPSF------LG--DSDPRVAILQLATED-EVFLLDLLALENLESEDWDRLLKRLFEDPDVLKLGFGFKQD 93 (191)
T ss_pred CEEEEECCCCCCC------CC--CCCCCEEEEEEECCC-CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 8899978757877------78--888952799995299-75899970456543477899999994799968999443868
Q ss_pred HHHHHHHCCCC----CCCCCEEEHHHHHHHHC-------------CCCCHHHHHHH-HCCCCCCHHHHHCHHHHHHHHHH
Q ss_conf 99999862998----78650454588999858-------------89997899998-08898652766376576641002
Q gi|254780127|r 77 RILFKKTLGID----IPSKRWICTSVLARTNG-------------LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKG 138 (675)
Q Consensus 77 ~~vL~~~lGi~----i~~~~~~DTmi~A~~l~-------------~p~sL~~la~~-lgl~~~~~kd~~gk~li~~~~~~ 138 (675)
T Consensus 94 ~~~L~~~~~~~~~~~~~~~~~~Dl~~~a~~~~~~~~~~~~~~~~~~~~gL~~L~~~~lg~~l~K~~-------------- 159 (191)
T cd06146 94 LKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQAVLGKPLDKSE-------------- 159 (191)
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCC--------------
T ss_conf 999998658643233364403579999999731122101100355675699999999098788565--------------
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 332013453112587689998988775399999999872
Q gi|254780127|r 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 (675)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L 177 (675)
T Consensus 160 -q-----~SnW~~rP-Lt~~Qi~YAA~Da~~ll~iy~~L 191 (191)
T cd06146 160 -Q-----CSNWERRP-LREEQILYAALDAYCLLEVFDKL 191 (191)
T ss_pred -C-----CCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf -1-----38999998-99999999999899999999739