HHsearch alignment for GI: 254780127 and conserved domain: cd06148
>cd06148 Egl_like_exo The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs.
Probab=99.59 E-value=1.6e-13 Score=107.67 Aligned_cols=157 Identities=17% Similarity=0.063 Sum_probs=108.9
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCCCH--HHHHHHHHHCCCCCEEEEEEHHHHHHH
Q ss_conf 789998040678870004600002688299999998382289997888422--179999986488981998630775999
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLLQYLRDETVMCVAHNSLFERIL 79 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~~~--~~~~l~~~L~~~~~~kv~HNa~FD~~v 79 (675)
T Consensus 11 ~vi~iD~E~~~--------~~~~---g~l~LiQiat~~~~vyl~D~~~~~~~~~~~~Lk~iLe~~~I~KV~H~~r~D~~~ 79 (197)
T cd06148 11 KVIGLDCEGVN--------LGRK---GKLCLVQIATRTGQIYLFDILKLGSIVFINGLKDILESKKILKVIHDCRRDSDA 79 (197)
T ss_pred CEEEEECCCCC--------CCCC---CCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHH
T ss_conf 99999888678--------8989---988799996489988999616676344568999995699823999610999999
Q ss_pred HHHHCCCCCCCCCEEEHHHHHHHHCC----------CCCHHHHHH-HHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99862998786504545889998588----------999789999-8088986527663765766410023320134531
Q gi|254780127|r 80 FKKTLGIDIPSKRWICTSVLARTNGL----------PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 (675)
Q Consensus 80 L~~~lGi~i~~~~~~DTmi~A~~l~~----------p~sL~~la~-~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~ 148 (675)
T Consensus 80 L~~~~gi~~--~nvfDTqiA~~ll~~~~~~~~~~~~~~sl~~l~~~~l~~~~~~~~~~--~~~--------~~--~~~s~ 145 (197)
T cd06148 80 LYHQYGIKL--NNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISISLKEDV--KKL--------MR--EDPKF 145 (197)
T ss_pred HHHHHCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH--HHH--------HH--CCCCC
T ss_conf 999709970--67031999999975313147677564159999999957640177877--888--------75--06554
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 125876899989887753999999998720021431
Q gi|254780127|r 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 (675)
Q Consensus 149 ~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~~~~~E 184 (675)
T Consensus 146 W~~RP-Lt~~ql~YAa~DV~yL~~L~~~L~~~Li~~ 180 (197)
T cd06148 146 WALRP-LTEDMIRYAALDVLCLLPLYYAMLDALISK 180 (197)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46799-999999999998999999999999999999