>cd06444 DNA_pol_A DNA polymerase family A, 5'-3' polymerase domain. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified into six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class X), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerases are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I, mitochondrial polymerase gamma, and several bacteriophage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol I has two functional domains located on the same polypeptide; a 5'-3' polymerase and a 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide po

Probab=91.32  E-value=0.21  Score=27.54  Aligned_cols=51  Identities=10%  Similarity=-0.003  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             403666665666765478899999999987511101031088978899999986730789
Q gi|254780127|r  460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ  519 (675)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~p~i~~  519 (675)
T Consensus       233 s~~eA~~~~~~f~~~~p~v~~~~~~~~~~a~~~g~v~T~~GR---------~r~~~~~~~  283 (379)
T cd06444         233 SREEAKEFIDRYFATYPGVKEYLEKTVEEAREGGYVETLFGR---------RRYLPEINS  283 (379)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCC---------EECCCCCCC
T ss_conf             999999999999997865667899999999977977667788---------534775567