HHsearch alignment for GI: 254780127 and conserved domain: pfam00940
>pfam00940 RNA_pol DNA-dependent RNA polymerase. This is a family of single chain RNA polymerases.
Probab=95.29 E-value=0.17 Score=28.04 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=88.1
Q ss_pred HHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHH
Q ss_conf 02210064210013307887789887887088864036666656667654788999999999875111010310889788
Q gi|254780127|r 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 (675)
Q Consensus 426 ~~~R~~aK~~~~gl~YG~G~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~ 505 (675)
T Consensus 153 ~i~Rk~vKr~vMT~~Yg~t~~g~~~qi~~---------~l~~~~----~~~~--------------~~~~~~~~~yla~~ 205 (391)
T pfam00940 153 KITRKVVKQTVMTLVYGVTFYGAREQIKD---------QLKEKG----TDES--------------KVLSYKAANYLAKI 205 (391)
T ss_pred CCCHHHHHCCEEEEECCCCCCHHHHHHHH---------HHHHCC----CCCC--------------HHHHHHHHHHHHHH
T ss_conf 66686640321664226662009999999---------998436----8731--------------45678999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECC-CCHHHCCCCCCHHHHHHCCCH
Q ss_conf 9999998673078999999999999963372142013222344321244564112246-311310245201233203100
Q gi|254780127|r 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP-SSRRLVYSDVKGDCSYLNTAT 584 (675)
Q Consensus 506 ~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~p-sGR~l~~~~~~~~~~~~~~~~ 584 (675)
T Consensus 206 i~~si~~v~~~a~~~m~wL~~~a~~~~~~~~pv~W~TP~Gf~V~Q~Y~k~~~~~V~t~l~~~~~~~~~--~---~~~~~d 280 (391)
T pfam00940 206 IFEAIKEVFPGAREIMDWLNECAKLIAKLNIPVVWTTPLGLPVVQPYRKSKKKRVKTSLQGVSRIKVI--T---LTPVSD 280 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCEEEECCC--C---CCCCCC
T ss_conf 99999998574999999999999999828996599999999898641688757999861566886135--6---666567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCC
Q ss_conf 123577653355777674798999999999999967981899953589996784
Q gi|254780127|r 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 (675)
Q Consensus 585 ~~~~r~~~~g~k~~n~~iQgtAaDi~k~am~~l~~~g~~ivl~VHDElv~evp~ 638 (675)
T Consensus 281 ~~Kq~~-----a~~PNfIHSlDAshl~~t~~~~~~~gi~-f~~IHDsf~tha~d 328 (391)
T pfam00940 281 KRKQKS-----AFPPNFIHSLDASHLMLTALACIKAGIP-FASVHDSFWTHAND 328 (391)
T ss_pred HHHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC
T ss_conf 565423-----6797413334489999999999856998-78871078877214