HHsearch alignment for GI: 254780127 and conserved domain: pfam03175
>pfam03175 DNA_pol_B_2 DNA polymerase type B, organellar and viral. Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.
Probab=93.71 E-value=0.17 Score=28.01 Aligned_cols=113 Identities=20% Similarity=0.106 Sum_probs=52.9
Q ss_pred EEEEEEH-HHHHHHHHHHCCC----C---CC--------------CCCEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 1998630-7759999986299----8---78--------------65045458899985889997899998088986527
Q gi|254780127|r 67 MCVAHNS-LFERILFKKTLGI----D---IP--------------SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 (675)
Q Consensus 67 ~kv~HNa-~FD~~vL~~~lGi----~---i~--------------~~~~~DTmi~A~~l~~p~sL~~la~~lgl~~~~~k 124 (675)
T Consensus 2 ~~y~HNl~~fD~~fil~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~DS~~-----l~~~sL~~~~~~f~l~~~Kg~ 76 (452)
T pfam03175 2 IPYAHNLSKFDGTFILPNLIRKKIIDKKIWKNGIIIKIDFKYKYIKIMVRDSYL-----LLPTSLRKLAKAFNLEVQKGC 76 (452)
T ss_pred CEECCCCCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCCEEEEEECCHH-----HHHHHHHHHHHHHCCCCCCCC
T ss_conf 366357642477555544664288763471489479888752627999981455-----433649999998398665786
Q ss_pred ----HHH-------C-HHHHHHHHHHHH----HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf ----663-------7-657664100233----20134531125876899989887753999999998720021431
Q gi|254780127|r 125 ----MEE-------G-KALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 (675)
Q Consensus 125 ----d~~-------g-k~li~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~~~~~E 184 (675)
T Consensus 77 fPy~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~~DV~iL~~v~~~f~~~~~~~ 152 (452)
T pfam03175 77 FPYDFVNKNYMWDKGGFPIEKYWKDFKEYILNKEIWNLKNRPNGYDIRKETIEYCKNDVLVLAKLLISFKNFIYEE 152 (452)
T ss_pred CCHHHHCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6817746566526778884554256134566777876640466676299999999999999999999999999998