HHsearch alignment for GI: 254780127 and conserved domain: smart00482
>smart00482 POLAc DNA polymerase A domain.
Probab=100.00 E-value=0 Score=356.48 Aligned_cols=200 Identities=29% Similarity=0.371 Sum_probs=171.3
Q ss_pred CHHHHEEEECCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCCCCCHHHHH
Q ss_conf 01321214769987899973354850588662287678665404441000015776087511057022100642100133
Q gi|254780127|r 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 (675)
Q Consensus 361 ~~~iR~~f~a~~G~~lv~aDySqiElRvlA~ls~d~~li~~f~~g~D~h~~tA~~~~~~~~~~v~~~~R~~aK~~~~gl~ 440 (675)
T Consensus 1 g~~~R~~f~a~~G~~lv~aD~sqiE~Rv~A~la~D~~l~~~~~~g~D~h~~~A~~~f~~~~~~~~~~~R~~aK~~~~g~~ 80 (206)
T smart00482 1 GREIRRAFVAPPGYVLVSADYSQIELRILAHLSGDENLLEAFNNGGDIHSKTAAQVFGVPEEEVTKELRRAAKAINFGII 80 (206)
T ss_pred CCHHHCEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCHHHHHHHCHHHHHHH
T ss_conf 90432267679999999988668999999998298779998743898689999996498801157566988567888665
Q ss_pred HCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 07887789887887088864036666656667654788999999999875111010310889788999999867307899
Q gi|254780127|r 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 (675)
Q Consensus 441 YG~G~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~p~i~~~ 520 (675)
T Consensus 81 YG~G~~~la~---~-----------------------------------------~g~~~~ea~~~~~~~~~~~p~i~~~ 116 (206)
T smart00482 81 YGMGAKGLAE---Q-----------------------------------------LGISEAEAKELIKAYFARFPGVKRY 116 (206)
T ss_pred CCCCCCCHHH---H-----------------------------------------CCCCHHHHHHHHHHHHHHCHHHHHH
T ss_conf 1865110245---5-----------------------------------------1889999999999999978359999
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999633721420132223443212445641122463113102452012332031001235776533557776
Q gi|254780127|r 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 (675)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~psGR~l~~~~~~~~~~~~~~~~~~~~r~~~~g~k~~n~ 600 (675)
T Consensus 117 ~~~~~~~~~~---~g-----------------------~v~t~~Gr~~~~~~~~~~~~~~~~---------~~~~~~~N~ 161 (206)
T smart00482 117 IKRTLEEARR---KG-----------------------YVTTLFGRRRYIPDIDSRNPVLRA---------AAERAAVNA 161 (206)
T ss_pred HHHHHHHHHH---CC-----------------------CEECCCCCEEECCCCCCCCHHHHH---------HHHHHHCCH
T ss_conf 9999999987---79-----------------------666788877767876875654553---------578766071
Q ss_pred HHHHHHHHHHHHHHHHHHHC------CCCEEEEECCEEEEECCCC
Q ss_conf 74798999999999999967------9818999535899967847
Q gi|254780127|r 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639 (675)
Q Consensus 601 ~iQgtAaDi~k~am~~l~~~------g~~ivl~VHDElv~evp~~ 639 (675)
T Consensus 162 ~vQgtaadi~~~al~~~~~~~~~~~~~~~iv~~VHDeiv~evp~e 206 (206)
T smart00482 162 PIQGSAADILKLAMIKMDEALKEKGLRARLLLQVHDELVFEVPEE 206 (206)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCC
T ss_conf 022899999999999999999853999779985360259961899