HHsearch alignment for GI: 254780127 and conserved domain: smart00482

>smart00482 POLAc DNA polymerase A domain.
Probab=100.00  E-value=0  Score=356.48  Aligned_cols=200  Identities=29%  Similarity=0.371  Sum_probs=171.3

Q ss_pred             CHHHHEEEECCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCCCCCHHHHH
Q ss_conf             01321214769987899973354850588662287678665404441000015776087511057022100642100133
Q gi|254780127|r  361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG  440 (675)
Q Consensus       361 ~~~iR~~f~a~~G~~lv~aDySqiElRvlA~ls~d~~li~~f~~g~D~h~~tA~~~~~~~~~~v~~~~R~~aK~~~~gl~  440 (675)
T Consensus         1 g~~~R~~f~a~~G~~lv~aD~sqiE~Rv~A~la~D~~l~~~~~~g~D~h~~~A~~~f~~~~~~~~~~~R~~aK~~~~g~~   80 (206)
T smart00482        1 GREIRRAFVAPPGYVLVSADYSQIELRILAHLSGDENLLEAFNNGGDIHSKTAAQVFGVPEEEVTKELRRAAKAINFGII   80 (206)
T ss_pred             CCHHHCEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCHHHHHHHCHHHHHHH
T ss_conf             90432267679999999988668999999998298779998743898689999996498801157566988567888665


Q ss_pred             HCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             07887789887887088864036666656667654788999999999875111010310889788999999867307899
Q gi|254780127|r  441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL  520 (675)
Q Consensus       441 YG~G~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~p~i~~~  520 (675)
T Consensus        81 YG~G~~~la~---~-----------------------------------------~g~~~~ea~~~~~~~~~~~p~i~~~  116 (206)
T smart00482       81 YGMGAKGLAE---Q-----------------------------------------LGISEAEAKELIKAYFARFPGVKRY  116 (206)
T ss_pred             CCCCCCCHHH---H-----------------------------------------CCCCHHHHHHHHHHHHHHCHHHHHH
T ss_conf             1865110245---5-----------------------------------------1889999999999999978359999


Q ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999633721420132223443212445641122463113102452012332031001235776533557776
Q gi|254780127|r  521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN  600 (675)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~psGR~l~~~~~~~~~~~~~~~~~~~~r~~~~g~k~~n~  600 (675)
T Consensus       117 ~~~~~~~~~~---~g-----------------------~v~t~~Gr~~~~~~~~~~~~~~~~---------~~~~~~~N~  161 (206)
T smart00482      117 IKRTLEEARR---KG-----------------------YVTTLFGRRRYIPDIDSRNPVLRA---------AAERAAVNA  161 (206)
T ss_pred             HHHHHHHHHH---CC-----------------------CEECCCCCEEECCCCCCCCHHHHH---------HHHHHHCCH
T ss_conf             9999999987---79-----------------------666788877767876875654553---------578766071


Q ss_pred             HHHHHHHHHHHHHHHHHHHC------CCCEEEEECCEEEEECCCC
Q ss_conf             74798999999999999967------9818999535899967847
Q gi|254780127|r  601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT  639 (675)
Q Consensus       601 ~iQgtAaDi~k~am~~l~~~------g~~ivl~VHDElv~evp~~  639 (675)
T Consensus       162 ~vQgtaadi~~~al~~~~~~~~~~~~~~~iv~~VHDeiv~evp~e  206 (206)
T smart00482      162 PIQGSAADILKLAMIKMDEALKEKGLRARLLLQVHDELVFEVPEE  206 (206)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCC
T ss_conf             022899999999999999999853999779985360259961899