HHsearch alignment for GI: 254780128 and conserved domain: cd00221
>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.
Probab=92.91 E-value=0.93 Score=26.51 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEE--------ECCCCCCCHHHHHHH----------
Q ss_conf 99999999999997898999981188898743999906982999999--------768988688999999----------
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEV--------KKPTGRLSHQQMSEI---------- 72 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEv--------K~~~gkls~~Q~~~~---------- 72 (103)
T Consensus 17 ~TkpE~~vrk~L~~~G~Ry-r~~~k~lpG~PDi-v~~~~k~aIFvdGCFWHgh~~~~-~~~pk~n~~fW~~Ki~~N~~RD 93 (115)
T cd00221 17 DTKPERAVRSALWELGYRF-RKQDKDLPGKPDI-VVPGYRLAIFVDGCFWHGHPCHK-RKPPPKNTEFWLEKIERNVERD 93 (115)
T ss_pred CCHHHHHHHHHHHHCCCEE-EECCCCCCCCCCE-EECCCCEEEEECCEEECCCCCCC-CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9869999999999889989-9668877999999-73576289993240433888757-8889853899999999999989
Q ss_pred ----HHHHHCCCEEEEECCH
Q ss_conf ----9999789889998598
Q gi|254780128|r 73 ----EELRRRGQRVKVLVSM 88 (103)
Q Consensus 73 ----~~l~~~G~~~~Vv~s~ 88 (103)
T Consensus 94 ~~~~~~L~~~GW~v~~vWEc 113 (115)
T cd00221 94 RRVQAALERLGWRVLRVWEC 113 (115)
T ss_pred HHHHHHHHHCCCEEEEEEEC
T ss_conf 99999999889989999830