HHsearch alignment for GI: 254780128 and conserved domain: pfam03838
>pfam03838 RecU Recombination protein U.
Probab=91.88 E-value=1.3 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEE---------ECC------------CCCCCCEEEEECCCCCEEEEEEECCCC-------
Q ss_conf 9999999999999789899998---------118------------889874399990698299999976898-------
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKA---------SFV------------GRRGCPDRLIITPNGGLWWIEVKKPTG------- 62 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~---------~~~------------g~~GvPDli~~~~~g~~~fIEvK~~~g------- 62 (103)
T Consensus 7 E~~IN~tn~~Y~~~~~A~I~KkptPi~ivkv~~~~r~~a~I~~ayf~~kSt~DY~Gvy-~G~~i~FEAKeT~nkt~Fpl~ 85 (167)
T pfam03838 7 EELINETNQYYLANGIAVIHKKPTPIQIVKVDYPKRSAAVIKEAYFKQKSTTDYNGVY-KGRYIDFEAKETKNKTSFPLK 85 (167)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE-CCEEEEEECCCCCCCCCCCHH
T ss_conf 9999999999987797999970788179943786555334677887357767733167-789999982243566745724
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 868899999999997898899985
Q gi|254780128|r 63 RLSHQQMSEIEELRRRGQRVKVLV 86 (103)
Q Consensus 63 kls~~Q~~~~~~l~~~G~~~~Vv~ 86 (103)
T Consensus 86 Ni~~HQi~~L~~~~~~gGiaF~ii 109 (167)
T pfam03838 86 NIHEHQIEHLKQVLKQGGICFVII 109 (167)
T ss_pred HCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 556999999999998899799999