Query         gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs    109 out of 449
Neff          6.0 
Searched_HMMs 33803
Date          Sun May 22 15:37:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780128.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1gef_A Holliday junction reso  97.6 0.00063 1.9E-08   45.3   8.8   73    9-85      3-79  (123)
  2 >2wcw_A HJC; type II restricti  97.6  0.0013 3.8E-08   43.4  10.3   77    8-85      5-87  (139)
  3 >1hh1_A Holliday junction reso  97.0  0.0045 1.3E-07   40.1   8.3   74   10-84      7-89  (143)
  4 >2eo0_A Hypothetical protein S  96.8   0.011 3.3E-07   37.8   8.6   77    8-85      8-92  (147)
  5 >3h1t_A Type I site-specific r  96.3  0.0071 2.1E-07   38.9   4.9   79    8-86     23-122 (178)
  6 >2w00_A HSDR, R.ECOR124I; ATP-  95.6   0.029 8.5E-07   35.3   5.6   61    6-67     28-102 (174)
  7 >2fco_A Recombination protein   95.2    0.29 8.6E-06   29.2  10.7   75   11-86     34-136 (200)
  8 >3dnx_A Uncharacterized protei  94.9    0.18 5.2E-06   30.5   7.7   58    5-62      7-64  (153)
  9 >1zp7_A Recombination protein   94.8    0.38 1.1E-05   28.5  11.2   75   11-86     36-138 (206)
 10 >3fov_A UPF0102 protein RPA032  94.4    0.34 9.9E-06   28.8   8.2   61   14-75     26-92  (134)
 11 >2vld_A NUCS, UPF0286 protein   94.1    0.11 3.3E-06   31.7   5.4   89    9-97      4-101 (130)
 12 >2v9k_A Uncharacterized protei  77.9     6.3 0.00019   21.1   7.4   82   11-94    316-404 (410)
 13 >1y88_A Hypothetical protein A  68.4      11 0.00032   19.7   6.8   77    7-84     12-98  (144)
 14 >1cw0_A Protein (DNA mismatch   68.3      10 0.00031   19.8   4.8   85   12-100     3-113 (137)
 15 >1ob8_A Holliday-junction reso  65.9      12 0.00036   19.4   9.0   70   11-81      6-81  (135)
 16 >2r5v_A PCZA361.1; dioxygenase  61.7      14 0.00043   18.9   4.5   97    3-100     9-108 (207)
 17 >1xmx_A Hypothetical protein V  60.8      15 0.00044   18.8   4.7   22   41-63     84-105 (175)
 18 >2ixs_A SDAI restriction endon  55.6      18 0.00054   18.3   5.3   42   37-78     69-111 (164)
 19 >1vsr_A Protein (VSR endonucle  52.7      19 0.00055   18.3   3.8   74   12-89      2-98  (136)
 20 >1l6r_A Hypothetical protein T  49.7      23 0.00068   17.7   6.2   35   18-53     30-73  (160)
 21 >1zj8_A Probable ferredoxin-de  47.5      25 0.00073   17.5   7.1   92    7-101   102-205 (211)
 22 >3bac_A DNA ligase; adenylatio  46.1      25 0.00075   17.4   3.7   48   49-100    26-77  (134)
 23 >1z6n_A Hypothetical protein P  41.7      13 0.00039   19.2   1.6   80   13-96     71-163 (167)
 24 >1dgs_A DNA ligase; AMP comple  41.5      26 0.00078   17.4   3.1   47   52-101    29-79  (120)
 25 >2c5k_T Syntaxin TLG1, T-snare  37.2      31 0.00092   16.9   3.0   38   65-102    15-52  (95)
 26 >1vb3_A Threonine synthase; PL  35.0      26 0.00077   17.4   2.3   38   60-100    35-75  (118)
 27 >1zjj_A Hypothetical protein P  34.6      29 0.00086   17.1   2.5   38   61-98     15-57  (131)
 28 >3hrl_A Endonuclease-like prot  33.4      41  0.0012   16.2   4.4   75   10-87      3-80  (104)
 29 >3f9r_A Phosphomannomutase; tr  31.8      44  0.0013   16.0   5.1   24   75-98    115-138 (142)
 30 >1ne9_A FEMX; protein, ligase;  30.8      46  0.0013   15.9   5.7   50   52-101    10-65  (180)
 31 >2owo_A DNA ligase; protein/DN  30.7      46  0.0014   15.9   4.1   43   53-101    31-77  (118)
 32 >1wr8_A Phosphoglycolate phosp  30.2      47  0.0014   15.9   5.8   37   16-53     26-71  (162)
 33 >1rkq_A Hypothetical protein Y  29.5      48  0.0014   15.8   4.5   44    8-54     22-77  (176)
 34 >1yv9_A Hydrolase, haloacid de  27.0      53  0.0016   15.5   3.8   42   60-101    18-61  (154)
 35 >1v2d_A Glutamine aminotransfe  27.0      20 0.00059   18.1   0.6   24   37-60     31-55  (90)
 36 >1t47_A 4-hydroxyphenylpyruvat  26.7      54  0.0016   15.5   8.4   89   12-101    31-120 (177)
 37 >1xvi_A MPGP, YEDP, putative m  26.7      54  0.0016   15.5   3.8   35   62-96     25-61  (185)
 38 >2pq0_A Hypothetical conserved  26.1      55  0.0016   15.4   4.8   36   17-54     27-71  (158)
 39 >2akj_A Ferredoxin--nitrite re  25.7      56  0.0017   15.4   4.7   28   50-77    125-152 (191)
 40 >1nrw_A Hypothetical protein,   25.3      57  0.0017   15.3   5.3   15   39-54     59-73  (159)
 41 >1dce_A Protein (RAB geranylge  25.1      25 0.00075   17.4   0.8   43   25-68     13-57  (110)
 42 >2rbk_A Putative uncharacteriz  24.8      58  0.0017   15.3   2.7   27    8-36     20-46  (160)
 43 >1zau_A DNA ligase; AMP; HET:   24.7      31 0.00093   16.9   1.2   44   53-101    29-76  (118)
 44 >1kl7_A Threonine synthase; th  24.1      60  0.0018   15.2   3.7   41   60-100    65-106 (158)
 45 >3hr6_A SPAA, putative surface  23.9      60  0.0018   15.2   2.6   16   48-63     99-114 (147)
 46 >3jsl_A DNA ligase; NAD+-depen  22.7      64  0.0019   15.0   3.7   48   51-101    26-77  (126)
 47 >3a8u_X Omega-amino acid--pyru  22.4      65  0.0019   15.0   5.9   65   38-102    32-107 (112)
 48 >2pvp_A D-alanine-D-alanine li  21.6      67   0.002   14.9   5.5   42   11-62     79-120 (161)
 49 >3dnp_A Stress response protei  21.4      68   0.002   14.9   5.4   38   16-54     29-75  (175)
 50 >2b30_A Pvivax hypothetical pr  21.0      70  0.0021   14.8   4.9   42   59-100    41-84  (192)
 51 >3c6v_A Probable tautomerase/d  20.9      70  0.0021   14.8   3.3   16   55-70     25-40  (138)
 52 >3c3m_A Response regulator rec  20.8      70  0.0021   14.8   5.5   32   66-97     14-45  (108)
 53 >2c4n_A Protein NAGD; nucleoti  20.5      71  0.0021   14.7   3.6   39   61-99     17-60  (144)
 54 >2zos_A MPGP, mannosyl-3-phosp  20.5      71  0.0021   14.7   4.3   74   17-93     24-127 (165)

No 1  
>>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} (A:)
Probab=97.57  E-value=0.00063  Score=45.32  Aligned_cols=73  Identities=19%  Similarity=0.146  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHHH-HHCCCEEEE
Q ss_conf             8999999999999997898999981188898743999906982999999768988---688999999999-978988999
Q gi|254780128|r    9 QTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEEL-RRRGQRVKV   84 (103)
Q Consensus         9 ~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l-~~~G~~~~V   84 (103)
                      ++=+..|+.+++.+...|+.+++..+   +|-||++.. +++.++.||||+..+.   ++..|..-+..+ +..|+..++
T Consensus         3 ~kG~~~EReL~~~L~~~Gfav~R~pg---Sg~pDiiA~-~~~~~~~iEvKst~k~~iyi~~eqiekL~~f~~~fg~~p~i   78 (123)
T 1gef_A            3 RKGAQAERELIKLLEKHGFAVVRSAG---SKKVDLVAG-NGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVL   78 (123)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEBGG---GSSCSEEEE-CSSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHCEEEEEECC---CCCCCEEEC-CCEEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCEEE
T ss_conf             44106799999999972716999548---999766605-74068999999816875662588889999999861972689


Q ss_pred             E
Q ss_conf             8
Q gi|254780128|r   85 L   85 (103)
Q Consensus        85 v   85 (103)
                      +
T Consensus        79 a   79 (123)
T 1gef_A           79 A   79 (123)
T ss_dssp             E
T ss_pred             E
T ss_conf             9


No 2  
>>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A (A:)
Probab=97.56  E-value=0.0013  Score=43.39  Aligned_cols=77  Identities=19%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECC-C-CCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHH-HHHCCCE
Q ss_conf             8899999999999999789899998118-8-898743999906982999999768988---68899999999-9978988
Q gi|254780128|r    8 YQTEKDVEKRLVTGAKKLDCWVRKASFV-G-RRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEE-LRRRGQR   81 (103)
Q Consensus         8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~-g-~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~-l~~~G~~   81 (103)
                      +++=+..|+.|+..+...|+.|++.... + ....||++.. +++.++.||||+..+.   +++.|..-+.. .+..|+.
T Consensus         5 ~~kG~~~EReL~~~L~~~GfaviRapgSg~~~~~~pDiiA~-~~~~~~~IEvKst~~~~iyi~~eqiekL~~f~~~fg~~   83 (139)
T 2wcw_A            5 KSKGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAG-NGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAE   83 (139)
T ss_dssp             --CHHHHHHHHHHHHHHTTCEEEEBTTSSSCSSCCCSEEEE-CSSCEEEEEEEECSSSCEEEEHHHHHHHHHHHHHHTCE
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEE-CCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCE
T ss_conf             00136999999999997898699875446788899878840-69816866757502662560999999999999817985


Q ss_pred             EEEE
Q ss_conf             9998
Q gi|254780128|r   82 VKVL   85 (103)
Q Consensus        82 ~~Vv   85 (103)
                      .+++
T Consensus        84 p~ia   87 (139)
T 2wcw_A           84 AYVA   87 (139)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9999


No 3  
>>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} (A:)
Probab=97.04  E-value=0.0045  Score=40.14  Aligned_cols=74  Identities=23%  Similarity=0.296  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECC---CCCCCCEEEEECCCCCEEEEEEECCC-----CCCCHHHHHHHHHHHHC-CC
Q ss_conf             99999999999999789899998118---88987439999069829999997689-----88688999999999978-98
Q gi|254780128|r   10 TEKDVEKRLVTGAKKLDCWVRKASFV---GRRGCPDRLIITPNGGLWWIEVKKPT-----GRLSHQQMSEIEELRRR-GQ   80 (103)
Q Consensus        10 ~E~~ie~~l~~~lk~~G~~~~K~~~~---g~~GvPDli~~~~~g~~~fIEvK~~~-----gkls~~Q~~~~~~l~~~-G~   80 (103)
                      .-..-|+.+++++.+.|+.++....-   .+.|-||++.. .++..+|||||+-.     -.+++.|...+.++... +.
T Consensus         7 ~G~~~E~~a~~~L~~~Gy~ilr~~~~n~~~~~gEiDIIa~-~~~~lvfVEVKtr~~~~~~~~v~~~k~~kl~~~a~~~~~   85 (143)
T 1hh1_A            7 KGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIAL-KNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGG   85 (143)
T ss_dssp             --CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEE-ETTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEECC-CCCEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCH
T ss_conf             4447899999999875704999506887776999440246-774399999885157655365208888999999986071


Q ss_pred             EEEE
Q ss_conf             8999
Q gi|254780128|r   81 RVKV   84 (103)
Q Consensus        81 ~~~V   84 (103)
                      ..++
T Consensus        86 ~~~i   89 (143)
T 1hh1_A           86 SLFL   89 (143)
T ss_dssp             EEEE
T ss_pred             HEEE
T ss_conf             3178


No 4  
>>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} (A:)
Probab=96.79  E-value=0.011  Score=37.78  Aligned_cols=77  Identities=23%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEEC-CC--CCCCCEEEEECCCCCEEEEEEECC-CCC---CCHHHHHHHHHH-HHCC
Q ss_conf             889999999999999978989999811-88--898743999906982999999768-988---688999999999-9789
Q gi|254780128|r    8 YQTEKDVEKRLVTGAKKLDCWVRKASF-VG--RRGCPDRLIITPNGGLWWIEVKKP-TGR---LSHQQMSEIEEL-RRRG   79 (103)
Q Consensus         8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~-~g--~~GvPDli~~~~~g~~~fIEvK~~-~gk---ls~~Q~~~~~~l-~~~G   79 (103)
                      .++=+..|+.|++.+...|+.+++..+ +|  .+-.||++... ++.++.||||+. ++.   +..+|..-+-.+ +..|
T Consensus         8 ~~kG~~~EReL~~~L~~~Gfav~R~p~Sgg~~~~~~pDiiA~~-~~~~~~iEvKst~k~~~iyi~~eqvekL~~f~~~fg   86 (147)
T 2eo0_A            8 KSRGSSVERYIVSRLRDKGFAVIRAPASGSKRKDHVPDIIALK-SGVIILIEVKSRKNGQKIYIEKEQAEGIREFAKRSG   86 (147)
T ss_dssp             ----CHHHHHHHHHHHHTTCEEECC-----CCGGGSCSEEEEE-TTEEEEEEEEECCCC-CEEECHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECC-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             3353399999999999779867970145776788888625037-983799999871568753469999999999999679


Q ss_pred             CEEEEE
Q ss_conf             889998
Q gi|254780128|r   80 QRVKVL   85 (103)
Q Consensus        80 ~~~~Vv   85 (103)
                      +..+++
T Consensus        87 ~~p~iA   92 (147)
T 2eo0_A           87 GELFLG   92 (147)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
T ss_conf             938999


No 5  
>>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:1-169,A:362-370)
Probab=96.28  E-value=0.0071  Score=38.95  Aligned_cols=79  Identities=14%  Similarity=0.008  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHHHH-HHHCCCEEE---------------E----EECCCCCCCCEEEEECCCCCE-EEEEEECCCCCCCH
Q ss_conf             88999999999999-997898999---------------9----811888987439999069829-99999768988688
Q gi|254780128|r    8 YQTEKDVEKRLVTG-AKKLDCWVR---------------K----ASFVGRRGCPDRLIITPNGGL-WWIEVKKPTGRLSH   66 (103)
Q Consensus         8 ~~~E~~ie~~l~~~-lk~~G~~~~---------------K----~~~~g~~GvPDli~~~~~g~~-~fIEvK~~~gkls~   66 (103)
                      -++|.++..+++.. ++.+||-..               .    .......|.||.+++.++|.. +.||+|+++-.++.
T Consensus        23 ~~~E~~vr~~~I~~lL~~lGw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~Dy~l~~~~~~p~~viEaK~~~~~l~~  102 (178)
T 3h1t_A           23 ALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQ  102 (178)
T ss_dssp             SCCHHHHHHHTHHHHHHHTTTTSTTCEEEEEEECCCCCEEEETTEEEECCCCEEEEEEEEETTEEEEEEEECCTTSCGGG
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHH
T ss_conf             89999999998589999769998865015899504653643687466688787508998779908999963789779999


Q ss_pred             HHHHHHHHHHHCCCEEEEEC
Q ss_conf             99999999997898899985
Q gi|254780128|r   67 QQMSEIEELRRRGQRVKVLV   86 (103)
Q Consensus        67 ~Q~~~~~~l~~~G~~~~Vv~   86 (103)
                      .-..-.......|.+..++.
T Consensus       103 ~~~Q~~~Ya~~~~~~~~ilT  122 (178)
T 3h1t_A          103 GXQQAKDYAEILGLKFAYST  122 (178)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEE
T ss_conf             99999997886688779997


No 6  
>>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:1-54,A:129-248)
Probab=95.62  E-value=0.029  Score=35.28  Aligned_cols=61  Identities=25%  Similarity=0.213  Sum_probs=47.4

Q ss_pred             ECCCCHHHHHHHHHHHHHHCCCEEEE------------EE-CCCCCCCCEEEEECCCCC-EEEEEEECCCCCCCHH
Q ss_conf             04889999999999999978989999------------81-188898743999906982-9999997689886889
Q gi|254780128|r    6 FHYQTEKDVEKRLVTGAKKLDCWVRK------------AS-FVGRRGCPDRLIITPNGG-LWWIEVKKPTGRLSHQ   67 (103)
Q Consensus         6 ~h~~~E~~ie~~l~~~lk~~G~~~~K------------~~-~~g~~GvPDli~~~~~g~-~~fIEvK~~~gkls~~   67 (103)
                      -.|.+|++.|+.+++.|.+-|.-.++            +. .++..=-||+.++. +|- .+.||+|+|+..+...
T Consensus        28 ~~~~~e~~~~~~~~~~l~~~~~~~~~~~~nN~f~VvnQ~~~~g~~~~R~DIvLlV-NGLPLV~IELK~~~~~i~eA  102 (174)
T 2w00_A           28 DSYQSESDLERELIQDLRNQGYEFISVLXRNKVQIIQQFEQAGSHANRYDVTILV-NGLPLVQIELKKRGVAIREA  102 (174)
T ss_dssp             SCCSSHHHHHHHHHHHHHHTTCEECCCGGGSCEEEEECCC------CCCEEEEEE-TTEEEEEEEECCTTCCHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEE-CCCEEEEEEECCCCCCHHHH
T ss_conf             1027999999999999998796348985378699999889879996131399999-88167999868798999999


No 7  
>>2fco_A Recombination protein U (penicillin-binding protein related factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus HTA426} PDB: 1y1o_A (A:)
Probab=95.19  E-value=0.29  Score=29.19  Aligned_cols=75  Identities=13%  Similarity=0.122  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEE---------ECCC------------CCCCCEEEEECCCCCEEEEEEECCC-C------
Q ss_conf             9999999999999789899998---------1188------------8987439999069829999997689-8------
Q gi|254780128|r   11 EKDVEKRLVTGAKKLDCWVRKA---------SFVG------------RRGCPDRLIITPNGGLWWIEVKKPT-G------   62 (103)
Q Consensus        11 E~~ie~~l~~~lk~~G~~~~K~---------~~~g------------~~GvPDli~~~~~g~~~fIEvK~~~-g------   62 (103)
                      |..|......+....=+.+.|.         ..++            .+..||...++ .|+++..|.|... +      
T Consensus        34 E~~In~sn~~Y~~~~iA~I~KkPtPi~ivkv~~~~r~~a~i~~a~f~~kSt~DY~Gvy-kG~~i~FEAKeT~~k~~fpl~  112 (200)
T 2fco_A           34 EDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFPLK  112 (200)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEECCCCC-----------------CCCCCCSSCSEEEEE-TTEEEEEEEEEESCSSEEEGG
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEE-CCEEEEEECCCCCCCCCCCHH
T ss_conf             9999999999987797999970788279962477656654677896467988722577-688999984344576601423


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             868899999999997898899985
Q gi|254780128|r   63 RLSHQQMSEIEELRRRGQRVKVLV   86 (103)
Q Consensus        63 kls~~Q~~~~~~l~~~G~~~~Vv~   86 (103)
                      .++++|...++....+|+.++++=
T Consensus       113 nI~~HQi~~L~~~~~~ggiaF~iI  136 (200)
T 2fco_A          113 NFHAHQIRHMEQVVAHGGICFAIL  136 (200)
T ss_dssp             GSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             077999999999997899799999


No 8  
>>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi} (A:)
Probab=94.86  E-value=0.18  Score=30.51  Aligned_cols=58  Identities=16%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             EECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCC
Q ss_conf             1048899999999999999789899998118889874399990698299999976898
Q gi|254780128|r    5 SFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTG   62 (103)
Q Consensus         5 ~~h~~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~g   62 (103)
                      +++.++...+++.+.+.+.+.|+.+.--.+....--||++.+.++|.+..||+|....
T Consensus         7 ~r~~~~~~~l~r~v~r~l~~~g~~~~~Ev~l~~g~RaDv~a~~~~g~~~~iEiKvSra   64 (153)
T 3dnx_A            7 TLDLQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVXGLGPKGEIWVIECKSSRA   64 (153)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEEEEECTTCCEEEEEECSSHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCHH
T ss_conf             4347758799999999999779956666606899778899988999499999735788


No 9  
>>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A (A:)
Probab=94.78  E-value=0.38  Score=28.50  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCEEEEECCCCCEEEEEEECCCC-------
Q ss_conf             9999999999999789899998118---------------------889874399990698299999976898-------
Q gi|254780128|r   11 EKDVEKRLVTGAKKLDCWVRKASFV---------------------GRRGCPDRLIITPNGGLWWIEVKKPTG-------   62 (103)
Q Consensus        11 E~~ie~~l~~~lk~~G~~~~K~~~~---------------------g~~GvPDli~~~~~g~~~fIEvK~~~g-------   62 (103)
                      |..|......+....=+.+.|--.|                     ..+.-||...++ .|+++..|.|...+       
T Consensus        36 E~~In~sn~~Y~~~~iAvI~KkPtPi~ivkv~~~~r~~a~I~~ayf~~kSt~DY~Gvy-kG~~i~FEAKeT~nk~~fpl~  114 (206)
T 1zp7_A           36 EDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFPLQ  114 (206)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEECCCCCCSCC-------------CCCCCCSSCSEEEEE-TTEEEEEEEEECCCSSEEEGG
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEE-CCEEEEEECCCCCCCCCCCHH
T ss_conf             9999999999997798999972798289961576666745566896345778710377-789999974333577601533


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             868899999999997898899985
Q gi|254780128|r   63 RLSHQQMSEIEELRRRGQRVKVLV   86 (103)
Q Consensus        63 kls~~Q~~~~~~l~~~G~~~~Vv~   86 (103)
                      .++++|...++....+|+.++++=
T Consensus       115 ni~~HQi~~L~~~~~~gGIaF~ii  138 (206)
T 1zp7_A          115 NFHDHQIEHMKQVKAQDGICFVII  138 (206)
T ss_dssp             GSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             372999999999997899899999


No 10 
>>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009} (A:)
Probab=94.38  E-value=0.34  Score=28.81  Aligned_cols=61  Identities=18%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCC------CCCCHHHHHHHHHH
Q ss_conf             999999999978989999811888987439999069829999997689------88688999999999
Q gi|254780128|r   14 VEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPT------GRLSHQQMSEIEEL   75 (103)
Q Consensus        14 ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~------gkls~~Q~~~~~~l   75 (103)
                      -|.....+|++.|+.+..--.-.+.|==|||.. .++..+|||||+-.      ..+++.|...+.+.
T Consensus        26 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~-~~~~LvFVEVK~R~~~~~~~eav~~~K~~ri~~a   92 (134)
T 3fov_A           26 AEASAADYLERQGYRILARRFKTRCGEIDLVAQ-RDALVAFVEVKARGNVDDAAYAVTPRQQSRIVAA   92 (134)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEE-ETTEEEEEEEEEC------CCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEE-CCCEEEEEEEEEECCCCCHHHCCCHHHHHHHHHH
T ss_conf             999999999987999943422579996067998-1999999998874488997673999999999999


No 11 
>>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} (A:122-251)
Probab=94.15  E-value=0.11  Score=31.70  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCC-HHHH-HHHHHHHHCC----C
Q ss_conf             89999999999999978--9899998118889874399990698299999976898868-8999-9999999789----8
Q gi|254780128|r    9 QTEKDVEKRLVTGAKKL--DCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLS-HQQM-SEIEELRRRG----Q   80 (103)
Q Consensus         9 ~~E~~ie~~l~~~lk~~--G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls-~~Q~-~~~~~l~~~G----~   80 (103)
                      .+|+++|..+.+-+..+  |.....-..+-..|.=|++..-++|+++-||+|++....+ -.|. .....+.+.+    -
T Consensus         4 ~~E~dLe~~i~~n~~~l~~g~~~v~~E~~~~~g~IDll~~d~~~~~ViIElK~~~~~~~~i~Ql~~Y~~~~~~~~~~~~~   83 (130)
T 2vld_A            4 GSEAEXANLIFENPRVIEEGFKPIYREKPIRHGIVDVXGVDKDGNIVVLELKRRKADLHAVSQXKRYVDSLKEEYGENVR   83 (130)
T ss_dssp             -CHHHHHHHHHHCGGGTCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred             ECHHHHHHHHHHCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             22999999998699986789689999997188866899991799999999970479874899999999998612599913


Q ss_pred             EEEEECCHHHH-HHHHHH
Q ss_conf             89998598999-999999
Q gi|254780128|r   81 RVKVLVSMEEV-DNFLEE   97 (103)
Q Consensus        81 ~~~Vv~s~edv-~~~l~~   97 (103)
                      ...+|.+.+.. .+.+..
T Consensus        84 gi~~a~~~~~~~~~~~~~  101 (130)
T 2vld_A           84 GILVAPSLTEGAKKLLEK  101 (130)
T ss_dssp             EEEEESCBCHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHH
T ss_conf             999978699899999997


No 12 
>>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} (A:1-410)
Probab=77.87  E-value=6.3  Score=21.11  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCC-CCCHHHHHHH-HHHHHCCCEEEEE--
Q ss_conf             99999999999997-89899998118889874399990698299999976898-8688999999-9999789889998--
Q gi|254780128|r   11 EKDVEKRLVTGAKK-LDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTG-RLSHQQMSEI-EELRRRGQRVKVL--   85 (103)
Q Consensus        11 E~~ie~~l~~~lk~-~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~g-kls~~Q~~~~-~~l~~~G~~~~Vv--   85 (103)
                      |.-+|..+...+.. .++--++|.+.||--+==+++ . +||.|.||++.|.- .++..+...+ +.+++....+.|.  
T Consensus       316 ~~SVee~I~~~i~~~~~~~~~~fh~sGREDvDVRmL-G-~GRPFviEi~nP~r~~~~~~~l~~le~~IN~~~~~V~V~~L  393 (410)
T 2v9k_A          316 ESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTL-G-NGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRDL  393 (410)
T ss_dssp             SCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEE-E-EEEEEEEEEESCSCCCCCHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEC-C-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             778899988999987088734896367565541212-7-99836999247745668889999999998445993899974


Q ss_pred             --CCHHHHHHH
Q ss_conf             --598999999
Q gi|254780128|r   86 --VSMEEVDNF   94 (103)
Q Consensus        86 --~s~edv~~~   94 (103)
                        -+.+++..+
T Consensus       394 ~~v~r~~~~~i  404 (410)
T 2v9k_A          394 QLVTREAIGHM  404 (410)
T ss_dssp             EEECTHHHHHH
T ss_pred             EEECHHHHHHH
T ss_conf             89868997555


No 13 
>>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} (A:1-144)
Probab=68.37  E-value=11  Score=19.71  Aligned_cols=77  Identities=9%  Similarity=-0.032  Sum_probs=49.7

Q ss_pred             CCCCHHHHHHHHHHH-HHHCCCEEEE---EECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHH------HHHHH
Q ss_conf             488999999999999-9978989999---8118889874399990698299999976898868899999------99999
Q gi|254780128|r    7 HYQTEKDVEKRLVTG-AKKLDCWVRK---ASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSE------IEELR   76 (103)
Q Consensus         7 h~~~E~~ie~~l~~~-lk~~G~~~~K---~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~------~~~l~   76 (103)
                      .-++-.++|.+++.. +.+.|+.+.+   +..++..|--|++.. .++..++||||.-.+.........      ...+.
T Consensus        12 ~~l~~~~FE~~lv~~ll~~~Gy~~~~~~~~~~~~~D~giD~~~~-~~~~~~~VqcK~~~~~v~~~~v~~~~~~~~~~~~~   90 (144)
T 1y88_A           12 SGRENLYFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAE-RDGERYMIECKFHNIPVYTGLKEAMYTYARFLDVE   90 (144)
T ss_dssp             ----CHHHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEE-ETTEEEEEEECCCSSSCEECHHHHHHHHHHHHHHG
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEECEEECCCCCCCCEEEEEE-ECCEEEEEEEEECCCCCCCCCHHEEEHHHHHHHHH
T ss_conf             78722769999999999976990711458678878862489999-79908999999726788898101110465787776


Q ss_pred             HCCCEEEE
Q ss_conf             78988999
Q gi|254780128|r   77 RRGQRVKV   84 (103)
Q Consensus        77 ~~G~~~~V   84 (103)
                      ..++...|
T Consensus        91 ~~~~~~gi   98 (144)
T 1y88_A           91 KHGFTQPW   98 (144)
T ss_dssp             GGTCSEEE
T ss_pred             HCCCCEEE
T ss_conf             42786289


No 14 
>>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} (A:19-155)
Probab=68.27  E-value=10  Score=19.80  Aligned_cols=85  Identities=19%  Similarity=0.088  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC---------CC--------------HHH
Q ss_conf             9999999999997898999981188898743999906982999999768988---------68--------------899
Q gi|254780128|r   12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR---------LS--------------HQQ   68 (103)
Q Consensus        12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk---------ls--------------~~Q   68 (103)
                      +..|+.+...+.+.|..+.. ..+..++.+|+ ++. + .-+.||+=...=+         +.              ..-
T Consensus         3 S~~E~~l~~~L~~~G~~~~~-q~~v~~~~~D~-~~~-~-~rl~IE~DG~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~rd   78 (137)
T 1cw0_A            3 TAIEKRLASLLTGQGLAFRV-QDASLPGRPDF-VVD-E-YRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERD   78 (137)
T ss_dssp             CHHHHHHHHHHHHTTCCCEE-CCTTSTTCCSE-EEG-G-GTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEE-CCCCCCCEEEE-EEC-C-CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             98999999999988988996-56777997669-962-6-30389972010157764335688741888888876468989


Q ss_pred             HHHHHHHHHCCCEEEEECCHH---HHHHHHHHHHH
Q ss_conf             999999997898899985989---99999999986
Q gi|254780128|r   69 MSEIEELRRRGQRVKVLVSME---EVDNFLEELAC  100 (103)
Q Consensus        69 ~~~~~~l~~~G~~~~Vv~s~e---dv~~~l~~l~~  100 (103)
                      +..-..|+++|+.+.-+.+.+   +.+.+++.|..
T Consensus        79 ~~r~~~L~~~GW~vlr~~~~d~~~~~~~v~~~I~~  113 (137)
T 1cw0_A           79 RRDISRLQELGWRVLIVWECALRGREKLTDEALTE  113 (137)
T ss_dssp             HHHHHHHHHTTCEEEEEEHHHHSSTTCCCHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             99999999789989999667124775331999999


No 15 
>>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} (A:)
Probab=65.94  E-value=12  Score=19.42  Aligned_cols=70  Identities=16%  Similarity=0.140  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC--CCCCCCCEEEEECCCCCEEEEEEECCCC---CCCHHHHHHHHHHH-HCCCE
Q ss_conf             999999999999978989999811--8889874399990698299999976898---86889999999999-78988
Q gi|254780128|r   11 EKDVEKRLVTGAKKLDCWVRKASF--VGRRGCPDRLIITPNGGLWWIEVKKPTG---RLSHQQMSEIEELR-RRGQR   81 (103)
Q Consensus        11 E~~ie~~l~~~lk~~G~~~~K~~~--~g~~GvPDli~~~~~g~~~fIEvK~~~g---kls~~Q~~~~~~l~-~~G~~   81 (103)
                      -.+.+..+++..+..|..+++-..  .+..=+||++.- ++|.+..|+||....   .++..|...+.... ..|..
T Consensus         6 D~Rf~~el~di~~~~gf~vfr~~~~~~~~~~~~d~ia~-~gg~v~aI~vk~~~~~~~~~~r~~ie~l~~~ak~~gak   81 (135)
T 1ob8_A            6 GKNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFAT-KGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTMK   81 (135)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEEE-ETTEEEEEEEEEESSSEEEECHHHHHHHHHHHHTSSSE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCC
T ss_conf             16999999999985993599955789987899978996-79869999999557986988899999999999964976


No 16 
>>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis} (A:151-357)
Probab=61.66  E-value=14  Score=18.94  Aligned_cols=97  Identities=9%  Similarity=0.066  Sum_probs=49.6

Q ss_pred             EEEECCC-CHHHHHHHHHHHHHHCCCEEE-EEECCCCC-CCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf             0010488-999999999999997898999-98118889-87439999069829999997689886889999999999789
Q gi|254780128|r    3 FYSFHYQ-TEKDVEKRLVTGAKKLDCWVR-KASFVGRR-GCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRG   79 (103)
Q Consensus         3 ~~~~h~~-~E~~ie~~l~~~lk~~G~~~~-K~~~~g~~-GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G   79 (103)
                      +-|.++. .-+++++.+.-+.+.+|.... .+..++.. ++.-+.+ ..++....+++-.+.+...+....-.......+
T Consensus         9 i~Hv~i~V~~~Dl~~ai~FY~~~LGf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~   87 (207)
T 2r5v_A            9 IDHFAICLNAGDLGPTVEYYERALGFRQIFDEHIVVGAQAMNSTVV-QSASGAVTLTLIEPDRNADPGQIDEFLKDHQGA   87 (207)
T ss_dssp             EEEEEEECCTTCHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEEE-ECTTSCCEEEEEEECTTSBCCHHHHHHHHHTSS
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEE-CCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf             6566663267688999999998739568745401357503888742-057886545553367778720466676550576


Q ss_pred             CEEEEECCHHHHHHHHHHHHH
Q ss_conf             889998598999999999986
Q gi|254780128|r   80 QRVKVLVSMEEVDNFLEELAC  100 (103)
Q Consensus        80 ~~~~Vv~s~edv~~~l~~l~~  100 (103)
                      +..+++-.++|++++.+.|.+
T Consensus        88 g~~Hiaf~V~did~~~~~L~~  108 (207)
T 2r5v_A           88 GVQHIAFNSNDAVRAVKALSE  108 (207)
T ss_dssp             EEEEEEEECSCHHHHHHHHHH
T ss_pred             CCEEEEEEECCHHHHHHHHHH
T ss_conf             513677872769999999985


No 17 
>>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:142-182,A:252-385)
Probab=60.84  E-value=15  Score=18.85  Aligned_cols=22  Identities=32%  Similarity=0.226  Sum_probs=16.7

Q ss_pred             CEEEEECCCCCEEEEEEECCCCC
Q ss_conf             43999906982999999768988
Q gi|254780128|r   41 PDRLIITPNGGLWWIEVKKPTGR   63 (103)
Q Consensus        41 PDli~~~~~g~~~fIEvK~~~gk   63 (103)
                      =|+++. .+++.++||||+.+-+
T Consensus        84 LDV~~~-~~n~L~iIECKTg~~~  105 (175)
T 1xmx_A           84 LDVATV-VNNKLHIIECKTKGMR  105 (175)
T ss_dssp             EEEEEE-ETTEEEEEEEESSCCC
T ss_pred             EEEEEE-ECCEEEEEEECCCCCC
T ss_conf             589999-8999999995688877


No 18 
>>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus} (A:160-323)
Probab=55.57  E-value=18  Score=18.30  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=34.4

Q ss_pred             CCCCCEEEEECCCCCE-EEEEEECCCCCCCHHHHHHHHHHHHC
Q ss_conf             8987439999069829-99999768988688999999999978
Q gi|254780128|r   37 RRGCPDRLIITPNGGL-WWIEVKKPTGRLSHQQMSEIEELRRR   78 (103)
Q Consensus        37 ~~GvPDli~~~~~g~~-~fIEvK~~~gkls~~Q~~~~~~l~~~   78 (103)
                      +.-.||+++..++..+ +|||.=+..|-.++.-+..+.+|-+.
T Consensus        69 h~klPDvVl~~~~~~wL~liEaVtS~GPv~~~R~~eL~~l~~~  111 (164)
T 2ixs_A           69 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFAT  111 (164)
T ss_dssp             TCCCCSEEEEETTTTEEEEEEECCTTCCCCHHHHHHHHHHTCB
T ss_pred             CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             5679988998289998999999757799898999999999736


No 19 
>>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli K12} (A:)
Probab=52.74  E-value=19  Score=18.27  Aligned_cols=74  Identities=19%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCC--C------C-C-C-------------HHH
Q ss_conf             99999999999978989999811888987439999069829999997689--8------8-6-8-------------899
Q gi|254780128|r   12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPT--G------R-L-S-------------HQQ   68 (103)
Q Consensus        12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~--g------k-l-s-------------~~Q   68 (103)
                      +..|+.+...+.+.|..+.. ..+..++.+|+ ++. + .-.-||+=...  +      + + +             ..-
T Consensus         2 S~~E~~l~~~L~~~G~~~~~-~~~~~~~~~D~-~~~-~-~kl~IE~DG~~~h~~~~~~~~~~~~~~~~~~~~~~~~~erD   77 (136)
T 1vsr_A            2 TAIEKRLASLLTGQGLAFRV-QDASLPGRPDF-VVD-E-YRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERD   77 (136)
T ss_dssp             -CCCHHHHHHHHHTTCCCEE-SCTTSTTCCSE-EEG-G-GTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEE-CCCCCCCCCCE-EEC-C-CCEEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             75999999999988998997-88889998788-754-7-75799970421034884236899841877566775558889


Q ss_pred             HHHHHHHHHCCCEEEEECCHH
Q ss_conf             999999997898899985989
Q gi|254780128|r   69 MSEIEELRRRGQRVKVLVSME   89 (103)
Q Consensus        69 ~~~~~~l~~~G~~~~Vv~s~e   89 (103)
                      +.....|+++|+.+.-+++.+
T Consensus        78 ~~r~~~L~~~GW~Vlr~~~~~   98 (136)
T 1vsr_A           78 RRDISRLQELGWRVLIVWECA   98 (136)
T ss_dssp             HHHHHHHHHTTCEEEEEEHHH
T ss_pred             HHHHHHHHHCCCEEEEEECCC
T ss_conf             999999998889899996783


No 20 
>>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:1-85,A:153-227)
Probab=49.68  E-value=23  Score=17.73  Aligned_cols=35  Identities=23%  Similarity=0.084  Sum_probs=14.5

Q ss_pred             HHHHHHHCCCEEEEEECCCC---------CCCCEEEEECCCCCEE
Q ss_conf             99999978989999811888---------9874399990698299
Q gi|254780128|r   18 LVTGAKKLDCWVRKASFVGR---------RGCPDRLIITPNGGLW   53 (103)
Q Consensus        18 l~~~lk~~G~~~~K~~~~g~---------~GvPDli~~~~~g~~~   53 (103)
                      .++++++.|+.+.=.++-+.         -|+|+.++.. +|..+
T Consensus        30 aL~~L~~~Gi~i~iaTGr~~~~v~~~~~~l~i~~~~i~~-NGa~v   73 (160)
T 1l6r_A           30 SIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGE-NGGIM   73 (160)
T ss_dssp             HHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCCSCEEEG-GGTEE
T ss_pred             HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEC-CCEEE
T ss_conf             999999779989998488602158999971887407843-75599


No 21 
>>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418)
Probab=47.52  E-value=25  Score=17.53  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCC-CCEEEEEEECCCCCCCHHHHHHHHHHHH-C--CCEE
Q ss_conf             4889999999999999978989999811888987439999069-8299999976898868899999999997-8--9889
Q gi|254780128|r    7 HYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPN-GGLWWIEVKKPTGRLSHQQMSEIEELRR-R--GQRV   82 (103)
Q Consensus         7 h~~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~-g~~~fIEvK~~~gkls~~Q~~~~~~l~~-~--G~~~   82 (103)
                      |.....++ ..+++.+.+.|....+...  .....|...+++. ...+++=++.|.|++++.|...+..+.+ .  |...
T Consensus       102 ~gi~~~~~-~~v~~~L~~~Gl~t~~~~~--~~~~~~~~Gv~~q~dg~~~vri~~p~G~lt~~ql~~la~iA~kyg~g~ir  178 (211)
T 1zj8_A          102 HWIEVENV-PEIWRRLDDVGLQTTAPEP--VKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIR  178 (211)
T ss_dssp             EEECGGGH-HHHHHHHHTTTCBCTCCCC--CSSCCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCCHHHH-HHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             78888899-9999999975998647765--43555336437526884576454588455625659999999853998699


Q ss_pred             -------EE-ECCHHHHHHHHHHHHHH
Q ss_conf             -------99-85989999999999863
Q gi|254780128|r   83 -------KV-LVSMEEVDNFLEELACT  101 (103)
Q Consensus        83 -------~V-v~s~edv~~~l~~l~~t  101 (103)
                             .+ --+.|++.+++++|.+.
T Consensus       179 lTtrQ~i~l~~i~~~~~~~i~~~L~~~  205 (211)
T 1zj8_A          179 FTPYQKLVILDIPDALLDDLIAGLDAL  205 (211)
T ss_dssp             ECTTSCEEEEEECHHHHHHHHHHHHHT
T ss_pred             ECCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf             764005153046334099999999974


No 22 
>>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae} (A:19-55,A:174-270)
Probab=46.12  E-value=25  Score=17.45  Aligned_cols=48  Identities=17%  Similarity=0.221  Sum_probs=38.5

Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHH
Q ss_conf             9829999997689886889999999999789889----998598999999999986
Q gi|254780128|r   49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELAC  100 (103)
Q Consensus        49 ~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~  100 (103)
                      +..-+..|.|-.-    ..|...++.|+..|+.+    .+|.+.+++.+.++++..
T Consensus        26 ~~~~y~~e~k~d~----~tq~e~L~~L~~lGF~v~~~~~~~~~~~ev~~~i~~~~~   77 (134)
T 3bac_A           26 KPLTFCCEPKLDP----TTHYARLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQN   77 (134)
T ss_dssp             SSCEEEEEEEESC----SBHHHHHHHHHHTTCCBCTTCEEEEHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEEECC----CCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHH
T ss_conf             7823898765526----539999999998389766551486581899999999986


No 23 
>>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} (A:)
Probab=41.72  E-value=13  Score=19.17  Aligned_cols=80  Identities=14%  Similarity=-0.056  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHC-CCEEEEEE------------CCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf             9999999999978-98999981------------1888987439999069829999997689886889999999999789
Q gi|254780128|r   13 DVEKRLVTGAKKL-DCWVRKAS------------FVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRG   79 (103)
Q Consensus        13 ~ie~~l~~~lk~~-G~~~~K~~------------~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G   79 (103)
                      .....+.+..+.+ +..+.+..            ..|..|+|-++++.++|.......    |.+......+.+.++...
T Consensus        71 ~~~p~~~~la~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~~~~~----g~~~~~~~~~~~~l~~~~  146 (167)
T 1z6n_A           71 INLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFV----ERPQAVLDGGPQALAAYK  146 (167)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEE----SSCHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEE----HHHHHHHHHHHHHHHHHH
T ss_conf             9999999999977998389998886576799987752124320343267750442220----034898861002477654


Q ss_pred             CEEEEECCHHHHHHHHH
Q ss_conf             88999859899999999
Q gi|254780128|r   80 QRVKVLVSMEEVDNFLE   96 (103)
Q Consensus        80 ~~~~Vv~s~edv~~~l~   96 (103)
                      ....-....+|+.++|.
T Consensus       147 ~~~~~~~~~~~~~~ll~  163 (167)
T 1z6n_A          147 AGDYLEHAIGDVLAIIE  163 (167)
T ss_dssp             TTTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
T ss_conf             14011899999999862


No 24 
>>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:82-117,A:232-315)
Probab=41.49  E-value=26  Score=17.35  Aligned_cols=47  Identities=19%  Similarity=0.171  Sum_probs=37.2

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHHH
Q ss_conf             9999997689886889999999999789889----9985989999999999863
Q gi|254780128|r   52 LWWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELACT  101 (103)
Q Consensus        52 ~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~t  101 (103)
                      -+.+|.|-.+-   +.|...++.|+..|+.+    .+|.+++++.+.++++...
T Consensus        29 ~~~~E~K~~~~---~t~~e~l~~L~~~GF~v~~~~~~~~~~~~i~~~~~~~~~~   79 (120)
T 1dgs_A           29 LYTVEHKVSGL---KSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQ   79 (120)
T ss_dssp             EEEEEECCCCC---CBHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCC---CCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             38998745885---6999999999977998786758608999999999999988


No 25 
>>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T (T:)
Probab=37.20  E-value=31  Score=16.92  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             88999999999978988999859899999999998630
Q gi|254780128|r   65 SHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTL  102 (103)
Q Consensus        65 s~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~l~~t~  102 (103)
                      +..|...+...-+.+....-..+.+++.++++++..|+
T Consensus        15 T~EQ~~RL~q~L~~~~~~~~~~~~~Ev~EIv~di~ETi   52 (95)
T 2c5k_T           15 TKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETI   52 (95)
T ss_dssp             HHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986035775346899999999999999


No 26 
>>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} (A:124-213,A:401-428)
Probab=35.01  E-value=26  Score=17.37  Aligned_cols=38  Identities=13%  Similarity=0.252  Sum_probs=27.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHH
Q ss_conf             89886889999999999789889998---598999999999986
Q gi|254780128|r   60 PTGRLSHQQMSEIEELRRRGQRVKVL---VSMEEVDNFLEELAC  100 (103)
Q Consensus        60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv---~s~edv~~~l~~l~~  100 (103)
                      |.|..|+.|+.   .+...|..+.++   -++||+.+.+.++-.
T Consensus        35 P~g~vS~~k~~---qm~~~GanV~vi~V~G~fDDa~~~a~~l~~   75 (118)
T 1vb3_A           35 PRGKISPLQEK---LFCTLGGNIETVAIDGDFDACQALVKQAFD   75 (118)
T ss_dssp             ETTCSCHHHHH---HHHSCCTTEEEEEEESCHHHHHHHHHHGGG
T ss_pred             CCCCCCHHHHH---HHHHCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             57764078999---987526774388158987789999998863


No 27 
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=34.65  E-value=29  Score=17.09  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHHHHHHHHH
Q ss_conf             98868899999999997898899985-----989999999999
Q gi|254780128|r   61 TGRLSHQQMSEIEELRRRGQRVKVLV-----SMEEVDNFLEEL   98 (103)
Q Consensus        61 ~gkls~~Q~~~~~~l~~~G~~~~Vv~-----s~edv~~~l~~l   98 (103)
                      +.++-|.-..++++|+++|....++.     +.+++.+.|..+
T Consensus        15 ~~~~~~~a~e~l~~L~~~G~~~~ivTN~~~~~~~~~~~~L~~l   57 (131)
T 1zjj_A           15 GNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKM   57 (131)
T ss_dssp             TTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf             9995844999999999779968999489999999999999976


No 28 
>>3hrl_A Endonuclease-like protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090} (A:)
Probab=33.44  E-value=41  Score=16.18  Aligned_cols=75  Identities=9%  Similarity=-0.058  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             999999999999997898--999981188898743999906982999999768988-68899999999997898899985
Q gi|254780128|r   10 TEKDVEKRLVTGAKKLDC--WVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR-LSHQQMSEIEELRRRGQRVKVLV   86 (103)
Q Consensus        10 ~E~~ie~~l~~~lk~~G~--~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk-ls~~Q~~~~~~l~~~G~~~~Vv~   86 (103)
                      +++..|+.+-..+.+.|-  .-+....+...+.+|+ ++ ++ .-+.||+-.+.-. ....-...-+.|..+|+.+.=+.
T Consensus         3 ~~S~~E~~l~~~l~~~gl~~~~~~~~~~~~~~~~D~-~~-~~-~rlaIE~DG~~~~~~~~~d~~R~~~L~~~Gw~vlrv~   79 (104)
T 3hrl_A            3 AXSEAEAKLWQHLRAGRLNGYKFRRQQPXGNYIVDF-XC-VT-PKLIVEADGGQHAEQAVYDHARTVYLNSLGFTVLRFW   79 (104)
T ss_dssp             CCCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEE-EE-TT-TTEEEEEEC-------CCCHHHHHHHHHTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEE-EC-CC-CCEEEEECCCHHCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf             999999999999984475798656027656666611-04-43-2889997670213411422999999998998899960


Q ss_pred             C
Q ss_conf             9
Q gi|254780128|r   87 S   87 (103)
Q Consensus        87 s   87 (103)
                      .
T Consensus        80 ~   80 (104)
T 3hrl_A           80 N   80 (104)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 29 
>>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* (A:1-88,A:193-246)
Probab=31.83  E-value=44  Score=16.02  Aligned_cols=24  Identities=8%  Similarity=0.051  Sum_probs=15.3

Q ss_pred             HHHCCCEEEEECCHHHHHHHHHHH
Q ss_conf             997898899985989999999999
Q gi|254780128|r   75 LRRRGQRVKVLVSMEEVDNFLEEL   98 (103)
Q Consensus        75 l~~~G~~~~Vv~s~edv~~~l~~l   98 (103)
                      ..+.+...+-|.|++|-.+.+++|
T Consensus       115 ~~~~~~~~~~v~~p~dt~~~~~~~  138 (142)
T 3f9r_A          115 YTDKRTIGHKVTSYKDTIAEVEKI  138 (142)
T ss_dssp             HTCTTSEEEECSSHHHHHHHHHHH
T ss_pred             HHCCCCCEEEECCHHHHHHHHHHH
T ss_conf             955686789908999999999999


No 30 
>>1ne9_A FEMX; protein, ligase; 1.70A {Weissella viridescens} (A:138-317)
Probab=30.79  E-value=46  Score=15.91  Aligned_cols=50  Identities=20%  Similarity=0.195  Sum_probs=37.4

Q ss_pred             EEEEEEECC------CCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             999999768------98868899999999997898899985989999999999863
Q gi|254780128|r   52 LWWIEVKKP------TGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACT  101 (103)
Q Consensus        52 ~~fIEvK~~------~gkls~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~l~~t  101 (103)
                      ...+.+..+      -..+++..+.-+++.++.|..+.+..+.|+...+.+-+.++
T Consensus        10 ~~~~~L~~~~~~e~~~~~~~~~~Rr~irr~~r~g~~~~~~~~~e~~~~~~~~~~~~   65 (180)
T 1ne9_A           10 NMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTM   65 (180)
T ss_dssp             EEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             89997678988899998648979999999997697798539879999999999999


No 31 
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:80-116,A:237-317)
Probab=30.69  E-value=46  Score=15.90  Aligned_cols=43  Identities=23%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHHH
Q ss_conf             999997689886889999999999789889----9985989999999999863
Q gi|254780128|r   53 WWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELACT  101 (103)
Q Consensus        53 ~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~t  101 (103)
                      +..|.|-.      .|...++.|+..|+.+    .+|.+.+++.+.++++...
T Consensus        31 ~~~E~Ki~------t~~e~l~~L~~~GF~v~~~~~~~~~~~ei~~~~~~~~~~   77 (118)
T 2owo_A           31 WCCELKLD------THLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED   77 (118)
T ss_dssp             EEEEEEES------BHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEEECC------HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             89986040------256666554211542022210012100102345458886


No 32 
>>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231)
Probab=30.20  E-value=47  Score=15.85  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=19.1

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCC---------CCCEEEEECCCCCEE
Q ss_conf             99999999789899998118889---------874399990698299
Q gi|254780128|r   16 KRLVTGAKKLDCWVRKASFVGRR---------GCPDRLIITPNGGLW   53 (103)
Q Consensus        16 ~~l~~~lk~~G~~~~K~~~~g~~---------GvPDli~~~~~g~~~   53 (103)
                      ...++.+++.|..+.=.++....         |+++.++.. +|...
T Consensus        26 ~e~l~~l~~~Gi~~~i~Tgr~~~~~~~~l~~~~~~~~~i~~-nG~~i   71 (162)
T 1wr8_A           26 LEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAE-DGGAI   71 (162)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCSCEEEG-GGTEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCCEEEE-CCCEE
T ss_conf             99999998579909999357500102245532776752751-57323


No 33 
>>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} (A:1-90,A:197-282)
Probab=29.48  E-value=48  Score=15.77  Aligned_cols=44  Identities=18%  Similarity=-0.016  Sum_probs=23.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECCC------------CCCCCEEEEECCCCCEEE
Q ss_conf             88999999999999997898999981188------------898743999906982999
Q gi|254780128|r    8 YQTEKDVEKRLVTGAKKLDCWVRKASFVG------------RRGCPDRLIITPNGGLWW   54 (103)
Q Consensus         8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~g------------~~GvPDli~~~~~g~~~f   54 (103)
                      ...+..  ...++.+++.|..+.=.++-+            -.+.+|.+++. +|...+
T Consensus        22 ~i~~~~--~~al~~L~~~Gi~lvi~Tgr~~~~~~~~~~~l~i~~~~~~~I~~-nGa~i~   77 (176)
T 1rkq_A           22 TISPAV--KNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITY-NGALVQ   77 (176)
T ss_dssp             CCCHHH--HHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEG-GGTEEE
T ss_pred             CCCHHH--HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEC-CCCEEE
T ss_conf             519999--99999999889999999899889999999984776888759973-861565


No 34 
>>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264)
Probab=27.03  E-value=53  Score=15.51  Aligned_cols=42  Identities=10%  Similarity=0.053  Sum_probs=32.9

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHH
Q ss_conf             898868899999999997898899985--989999999999863
Q gi|254780128|r   60 PTGRLSHQQMSEIEELRRRGQRVKVLV--SMEEVDNFLEELACT  101 (103)
Q Consensus        60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv~--s~edv~~~l~~l~~t  101 (103)
                      .++++-|.=...+++|++.|..+.++.  +...++.+++++.-.
T Consensus        18 ~~~~~~p~~~e~l~~L~~~Gi~~~i~Tn~~~~~~~~~~~~l~~~   61 (154)
T 1yv9_A           18 LGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANE   61 (154)
T ss_dssp             ETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             49983813999999999779978999389999879999999875


No 35 
>>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} (A:1-36,A:299-352)
Probab=26.97  E-value=20  Score=18.10  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=18.1

Q ss_pred             CCCCCEEEEECCCCC-EEEEEEECC
Q ss_conf             898743999906982-999999768
Q gi|254780128|r   37 RRGCPDRLIITPNGG-LWWIEVKKP   60 (103)
Q Consensus        37 ~~GvPDli~~~~~g~-~~fIEvK~~   60 (103)
                      -.|+||.-+..|+|. ++|+++..-
T Consensus        31 ~qg~p~v~~~~P~GGfflWv~lp~~   55 (90)
T 1v2d_A           31 GQGFPSLRVYVPEGTYFLMAELPGW   55 (90)
T ss_dssp             CCCSCSCCEECCSBSSEEEEECTTC
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCH
T ss_conf             3889995430798326999968933


No 36 
>>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} (A:1-177)
Probab=26.69  E-value=54  Score=15.47  Aligned_cols=89  Identities=2%  Similarity=-0.134  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf             9999999999997898999981188898743999906-982999999768988688999999999978988999859899
Q gi|254780128|r   12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITP-NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEE   90 (103)
Q Consensus        12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~-~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~s~ed   90 (103)
                      .++++.+.-+.+.+|..+.........+..-..+... .+..+.+.. .........+......-......++++.+.+|
T Consensus        31 ~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  109 (177)
T 1t47_A           31 GNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARFVLTS-VIKPATPWGHFLADHVAEHGDGVVDLAIEVPD  109 (177)
T ss_dssp             SCHHHHHHHHHHTSCCEEEEEESGGGTCCSEEEEEEEETTEEEEEEE-ESSCCSHHHHHHHHHHHHHCSEEEEEEEECSC
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCEEEEEEC-CCCCCCCCCCHHHHHHHHCCCCEEEEEEEECC
T ss_conf             89999999999804986999967878860489999826999999946-88988865321344365479971689999664


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999863
Q gi|254780128|r   91 VDNFLEELACT  101 (103)
Q Consensus        91 v~~~l~~l~~t  101 (103)
                      +++..+.+.+.
T Consensus       110 ~~~~~~~l~~~  120 (177)
T 1t47_A          110 ARAAHAYAIEH  120 (177)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
T ss_conf             37899999976


No 37 
>>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} (A:1-97,A:188-275)
Probab=26.66  E-value=54  Score=15.47  Aligned_cols=35  Identities=11%  Similarity=-0.012  Sum_probs=12.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHH
Q ss_conf             886889999999999789889998--59899999999
Q gi|254780128|r   62 GRLSHQQMSEIEELRRRGQRVKVL--VSMEEVDNFLE   96 (103)
Q Consensus        62 gkls~~Q~~~~~~l~~~G~~~~Vv--~s~edv~~~l~   96 (103)
                      +++++.=...+++|++.|+.+.++  ++...+..+++
T Consensus        25 ~~i~~~~~~al~~l~~~g~~~vi~Tgr~~~~~~~~~~   61 (185)
T 1xvi_A           25 SYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQK   61 (185)
T ss_dssp             CCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf             9569999999999998899999985999899999999


No 38 
>>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A (A:1-82,A:183-258)
Probab=26.07  E-value=55  Score=15.41  Aligned_cols=36  Identities=19%  Similarity=0.048  Sum_probs=18.3

Q ss_pred             HHHHHHHHCCCEEEEEECCCCC---------CCCEEEEECCCCCEEE
Q ss_conf             9999999789899998118889---------8743999906982999
Q gi|254780128|r   17 RLVTGAKKLDCWVRKASFVGRR---------GCPDRLIITPNGGLWW   54 (103)
Q Consensus        17 ~l~~~lk~~G~~~~K~~~~g~~---------GvPDli~~~~~g~~~f   54 (103)
                      ..++++++.|..+.=.++-...         |+++++. . +|...+
T Consensus        27 e~L~~l~~~G~~i~i~Tgr~~~~~~~~l~~l~l~~~i~-~-nga~i~   71 (158)
T 2pq0_A           27 EAVRRLKQSGVYVAIATGRAPFXFEHVRKQLGIDSFVS-F-NGQYVV   71 (158)
T ss_dssp             HHHHHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEE-G-GGTEEE
T ss_pred             HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-C-CCEEEE
T ss_conf             99999997899999989998799899999744163995-6-980999


No 39 
>>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} (A:113-217,A:389-474)
Probab=25.68  E-value=56  Score=15.36  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=19.5

Q ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             8299999976898868899999999997
Q gi|254780128|r   50 GGLWWIEVKKPTGRLSHQQMSEIEELRR   77 (103)
Q Consensus        50 g~~~fIEvK~~~gkls~~Q~~~~~~l~~   77 (103)
                      ...++|=++.|.|++++.|..-+..+.+
T Consensus       125 ~G~~~V~i~~p~Grit~~ql~~lA~iAe  152 (191)
T 2akj_A          125 QGLSFVGLHIPVGRLQADEMEELARIAD  152 (191)
T ss_dssp             TTEEEEEECCGGGEECHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCEECHHHHHHHHHHHH
T ss_conf             8836755504797777999999999998


No 40 
>>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} (A:1-85,A:215-288)
Probab=25.34  E-value=57  Score=15.32  Aligned_cols=15  Identities=27%  Similarity=0.401  Sum_probs=7.2

Q ss_pred             CCCEEEEECCCCCEEE
Q ss_conf             8743999906982999
Q gi|254780128|r   39 GCPDRLIITPNGGLWW   54 (103)
Q Consensus        39 GvPDli~~~~~g~~~f   54 (103)
                      |+++.++.. +|...+
T Consensus        59 ~l~~~~i~~-~G~~i~   73 (159)
T 1nrw_A           59 GIKTWVISA-NGAVIH   73 (159)
T ss_dssp             TCCCEEEEG-GGTEEE
T ss_pred             CCCCCEEEC-CCEEEE
T ss_conf             998619978-954898


No 41 
>>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:242-351)
Probab=25.12  E-value=25  Score=17.44  Aligned_cols=43  Identities=16%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CCCEEEEEECC--CCCCCCEEEEECCCCCEEEEEEECCCCCCCHHH
Q ss_conf             89899998118--889874399990698299999976898868899
Q gi|254780128|r   25 LDCWVRKASFV--GRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQ   68 (103)
Q Consensus        25 ~G~~~~K~~~~--g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q   68 (103)
                      .+|...-|..|  -.+|.-+|+++. ||...++|=.+|.|+.++.+
T Consensus        13 e~cltv~FSrpv~vg~~~~~LlL~~-D~~Pl~VeWRTp~gr~r~s~   57 (110)
T 1dce_A           13 EACLSVCFSRPLTVGSRMGTLLLMV-DEAPLSVEWRTPDGRNRPSH   57 (110)
T ss_dssp             TTEEEEEEEEEECTTBTTBCEEEEE-SSSEECCCCBCTTSSCCSEE
T ss_pred             CCEEEEEECCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCC
T ss_conf             6504676246655443443001003-56654243358877676462


No 42 
>>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron vpi-5482} (A:1-85,A:187-261)
Probab=24.83  E-value=58  Score=15.27  Aligned_cols=27  Identities=7%  Similarity=-0.188  Sum_probs=16.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             88999999999999997898999981188
Q gi|254780128|r    8 YQTEKDVEKRLVTGAKKLDCWVRKASFVG   36 (103)
Q Consensus         8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~g   36 (103)
                      ..+|..  ...++++++.|..+.=.++..
T Consensus        20 ~i~~~~--~e~l~~l~~~Gi~i~i~Tg~~   46 (160)
T 2rbk_A           20 RIPSST--IEALEAAHAKGLKIFIATGRP   46 (160)
T ss_dssp             SCCHHH--HHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCHHH--HHHHHHHHHCCCEEEEECCCC
T ss_conf             889999--999999998899899988999


No 43 
>>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:90-125,A:247-328)
Probab=24.72  E-value=31  Score=16.90  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCEEE----EECCHHHHHHHHHHHHHH
Q ss_conf             9999976898868899999999997898899----985989999999999863
Q gi|254780128|r   53 WWIEVKKPTGRLSHQQMSEIEELRRRGQRVK----VLVSMEEVDNFLEELACT  101 (103)
Q Consensus        53 ~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~----Vv~s~edv~~~l~~l~~t  101 (103)
                      +.+|.|-     -..|...++.|+..|+++.    +|.+.+++.+.++++...
T Consensus        29 ~~~E~K~-----D~tq~e~L~~L~~~GF~v~~~~~~~~~~~ei~~~i~~~~~~   76 (118)
T 1zau_A           29 YLCELKI-----DATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH   76 (118)
T ss_dssp             EEEEEEE-----CSBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTTTT
T ss_pred             CCEEEEE-----CHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             2202444-----50069999999970876687738848999999999999975


No 44 
>>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} (A:121-241,A:478-514)
Probab=24.11  E-value=60  Score=15.18  Aligned_cols=41  Identities=15%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHHHH
Q ss_conf             89886889999999999789889998-598999999999986
Q gi|254780128|r   60 PTGRLSHQQMSEIEELRRRGQRVKVL-VSMEEVDNFLEELAC  100 (103)
Q Consensus        60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv-~s~edv~~~l~~l~~  100 (103)
                      |.|+.++.|+..+......|..+..+ -++||+.+...++-.
T Consensus        65 P~~~vs~~k~~qi~~~gaenv~Vv~V~Gs~Dda~~~a~~l~~  106 (158)
T 1kl7_A           65 PTGRISPIQEEQXTTVPDENVQTLSVTGTFDNCQDIVKAIFG  106 (158)
T ss_dssp             ETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHHC
T ss_conf             687875023666214078987998726996887599999850


No 45 
>>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* (A:290-436)
Probab=23.92  E-value=60  Score=15.17  Aligned_cols=16  Identities=13%  Similarity=0.235  Sum_probs=13.9

Q ss_pred             CCCCEEEEEEECCCCC
Q ss_conf             6982999999768988
Q gi|254780128|r   48 PNGGLWWIEVKKPTGR   63 (103)
Q Consensus        48 ~~g~~~fIEvK~~~gk   63 (103)
                      +-|.+.+.|+|+|.|-
T Consensus        99 ~~G~Y~l~E~kAP~GY  114 (147)
T 3hr6_A           99 KGTEFCLVETATASGY  114 (147)
T ss_dssp             SCSEEEEEEEECCTTC
T ss_pred             CCCEEEEEEEECCCCC
T ss_conf             9861999996689995


No 46 
>>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB: 3jsn_A* (A:80-114,A:228-318)
Probab=22.72  E-value=64  Score=15.02  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHHH
Q ss_conf             29999997689886889999999999789889----9985989999999999863
Q gi|254780128|r   51 GLWWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELACT  101 (103)
Q Consensus        51 ~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~t  101 (103)
                      -.+.+|.|--+-   ..|...++.|+..|+.+    .+|.+.+++.+.++++...
T Consensus        26 ~~~~~E~K~D~~---~t~~e~l~~Lk~~GF~v~~~~~~~~~~~ei~~~i~~~~~~   77 (126)
T 3jsl_A           26 VEYMCELKIDNA---RSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQ   77 (126)
T ss_dssp             CCEEEEEEECCC---SBHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC---CHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             118988602652---1178899999862776244538979999999999999974


No 47 
>>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridoxal phosphate; HET: PLP; 1.40A {Pseudomonas putida} (X:34-62,X:367-449)
Probab=22.41  E-value=65  Score=14.98  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEE-----------CCHHHHHHHHHHHHHHC
Q ss_conf             987439999069829999997689886889999999999789889998-----------59899999999998630
Q gi|254780128|r   38 RGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVL-----------VSMEEVDNFLEELACTL  102 (103)
Q Consensus        38 ~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv-----------~s~edv~~~l~~l~~t~  102 (103)
                      ...|-.-=..--|-+..||++.+.+.-.+.-....+.+.++|..+...           -+.+|+++.++-+..++
T Consensus        32 ~~~p~V~~vRg~Glm~giel~~~~~~~~~~~~~i~~~~~~~Gll~~~~gn~ir~~PPliite~el~~~l~~l~~~l  107 (112)
T 3a8u_X           32 KGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL  107 (112)
T ss_dssp             TTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             0589837860367199999955873699999999999998893881179989996985789999999999999999


No 48 
>>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} (A:140-163,A:231-367)
Probab=21.64  E-value=67  Score=14.88  Aligned_cols=42  Identities=10%  Similarity=0.030  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCC
Q ss_conf             9999999999999789899998118889874399990698299999976898
Q gi|254780128|r   11 EKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTG   62 (103)
Q Consensus        11 E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~g   62 (103)
                      ++++++.-++..+++||          +|+.-.=++..+|.++++|+-+--|
T Consensus        79 ~~~i~~~A~ki~~aLg~----------~g~~RIDf~v~~ge~yvlEvNt~PG  120 (161)
T 2pvp_A           79 EEQLKENFKKLYSDLFD----------GAIIRCDFFVIENEVYLNEINPIPG  120 (161)
T ss_dssp             HHHHHHHHHHHHTTTST----------TCCEEEEEEEETTEEEEEEEESSCG
T ss_pred             HHHHHHHHHHHHHHHCC----------CCEEEEEEEEECCEEEEEEECCCCC
T ss_conf             99999999999999699----------2769999999999899997409799


No 49 
>>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290)
Probab=21.44  E-value=68  Score=14.86  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=19.3

Q ss_pred             HHHHHHHHHCCCEEEEEECCC---------CCCCCEEEEECCCCCEEE
Q ss_conf             999999997898999981188---------898743999906982999
Q gi|254780128|r   16 KRLVTGAKKLDCWVRKASFVG---------RRGCPDRLIITPNGGLWW   54 (103)
Q Consensus        16 ~~l~~~lk~~G~~~~K~~~~g---------~~GvPDli~~~~~g~~~f   54 (103)
                      ...++++++.|..+.=.++..         .-|.|+.++.. +|..++
T Consensus        29 ~e~l~~l~~~Gi~~~ivTgr~~~~~~~~l~~lgl~~~~i~~-nGa~i~   75 (175)
T 3dnp_A           29 KDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITH-SGAYIA   75 (175)
T ss_dssp             HHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEG-GGTEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEECC-CCEEEE
T ss_conf             99999999789999998999889999999980997745616-864999


No 50 
>>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} (A:1-115,A:225-301)
Probab=20.99  E-value=70  Score=14.80  Aligned_cols=42  Identities=14%  Similarity=0.130  Sum_probs=34.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHH
Q ss_conf             689886889999999999789889998--598999999999986
Q gi|254780128|r   59 KPTGRLSHQQMSEIEELRRRGQRVKVL--VSMEEVDNFLEELAC  100 (103)
Q Consensus        59 ~~~gkls~~Q~~~~~~l~~~G~~~~Vv--~s~edv~~~l~~l~~  100 (103)
                      ..+..++|.=..+++++++.|....++  ++...+..++.++.-
T Consensus        41 ~~~~~i~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~~~~l~~   84 (192)
T 2b30_A           41 DKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENL   84 (192)
T ss_dssp             CTTTCSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf             98993499999999999978999999869998999999998477


No 51 
>>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293} (A:1-138)
Probab=20.89  E-value=70  Score=14.79  Aligned_cols=16  Identities=13%  Similarity=0.208  Sum_probs=6.3

Q ss_pred             EEEECCCCCCCHHHHH
Q ss_conf             9997689886889999
Q gi|254780128|r   55 IEVKKPTGRLSHQQMS   70 (103)
Q Consensus        55 IEvK~~~gkls~~Q~~   70 (103)
                      +.++.+.|++|++|+.
T Consensus        25 i~I~~~~g~lt~eqK~   40 (138)
T 3c6v_A           25 WLIQHSPNTLTPEEKS   40 (138)
T ss_dssp             EEEEECTTSSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
T ss_conf             9999469988999999


No 52 
>>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108)
Probab=20.75  E-value=70  Score=14.77  Aligned_cols=32  Identities=25%  Similarity=0.104  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf             89999999999789889998598999999999
Q gi|254780128|r   66 HQQMSEIEELRRRGQRVKVLVSMEEVDNFLEE   97 (103)
Q Consensus        66 ~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~   97 (103)
                      .+.....+.|+..|+.+..+.+.+++.+.+.+
T Consensus        14 ~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~   45 (108)
T 3c3m_A           14 XIVDVFVTXLERGGYRPITAFSGEECLEALNA   45 (108)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
T ss_conf             99999999999879999983353118998864


No 53 
>>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250)
Probab=20.54  E-value=71  Score=14.74  Aligned_cols=39  Identities=8%  Similarity=0.097  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHHHHHHHHHH
Q ss_conf             98868899999999997898899985-----9899999999998
Q gi|254780128|r   61 TGRLSHQQMSEIEELRRRGQRVKVLV-----SMEEVDNFLEELA   99 (103)
Q Consensus        61 ~gkls~~Q~~~~~~l~~~G~~~~Vv~-----s~edv~~~l~~l~   99 (103)
                      ++++-|.-...++++++.|..+.+|.     +.+++.+.+.++.
T Consensus        17 ~~~~~~~~~e~i~~l~~~G~~~~i~Tn~s~~~~~~~~~~l~~~g   60 (144)
T 2c4n_A           17 DNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAG   60 (144)
T ss_dssp             TTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99868219999999997799589992899899899975543124


No 54 
>>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:1-94,A:179-249)
Probab=20.48  E-value=71  Score=14.74  Aligned_cols=74  Identities=16%  Similarity=0.109  Sum_probs=40.1

Q ss_pred             HHHHHHHHCCCEEEEEECCCCC-----------CCCEEEEECCCCCEEEEE---------EECC-------CCCCCHHHH
Q ss_conf             9999999789899998118889-----------874399990698299999---------9768-------988688999
Q gi|254780128|r   17 RLVTGAKKLDCWVRKASFVGRR-----------GCPDRLIITPNGGLWWIE---------VKKP-------TGRLSHQQM   69 (103)
Q Consensus        17 ~l~~~lk~~G~~~~K~~~~g~~-----------GvPDli~~~~~g~~~fIE---------vK~~-------~gkls~~Q~   69 (103)
                      ..++++++.|..+.  ...||+           |+|+-+++. +|...+..         +...       --+..+.++
T Consensus        24 ~al~~l~~~G~~~~--iaTGR~~~~~~~~~~~l~~~~~~I~~-NGa~i~~~~~~~i~~~~i~~~~~~~i~~~~~~K~~~~  100 (165)
T 2zos_A           24 PIIEELKDXGFEII--FNSSKTRAEQEYYRKELEVETPFISE-NGSAIFIPKGYFPFDVKGKEVGNYIVIELGIDKGKAA  100 (165)
T ss_dssp             HHHHHHHHTTEEEE--EBCSSCHHHHHHHHHHHTCCSCEEET-TTTEEECCTTCCC------CCCCCCEEECSCCHHHHH
T ss_pred             HHHHHHHHCCCEEE--EECCCCHHHHHHHHHHHCCCCCEEEE-CCCEEEECCCCEEECCCCHHHHHHHHHHHHHCHHHHH
T ss_conf             99999998899999--99189889999999973456854860-8828984898343045425677899999651227799


Q ss_pred             HHHHH-HHHCCCEE--EEECCHHHHHH
Q ss_conf             99999-99789889--99859899999
Q gi|254780128|r   70 SEIEE-LRRRGQRV--KVLVSMEEVDN   93 (103)
Q Consensus        70 ~~~~~-l~~~G~~~--~Vv~s~edv~~   93 (103)
                      ..+-. +...+...  ++-||..|+.-
T Consensus       101 ~~l~~~l~~~~~~~~~~~GD~~ND~~m  127 (165)
T 2zos_A          101 KILLDFYKRLGQIESYAVGDSYNDFPX  127 (165)
T ss_dssp             HHHHHHHHTTSCEEEEEEECSGGGHHH
T ss_pred             HHHHHHHCCCCHHEEEEEECCHHHHHH
T ss_conf             999998549992109999197857999


Done!