Query gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 109 out of 449
Neff 6.0
Searched_HMMs 23785
Date Sun May 22 09:11:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780128.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ob8_A Holliday-junction resol 97.5 0.00066 2.8E-08 44.3 8.8 68 12-80 7-80 (135)
2 2wcw_A HJC; type II restrictio 97.1 0.005 2.1E-07 38.9 10.0 77 10-87 7-89 (139)
3 1gef_A Holliday junction resol 97.1 0.0033 1.4E-07 40.0 8.9 74 9-86 3-80 (123)
4 1hh1_A Holliday junction resol 96.7 0.0071 3E-07 38.0 8.0 75 11-86 8-91 (143)
5 2eo0_A Hypothetical protein ST 96.7 0.0081 3.4E-07 37.7 8.1 76 11-87 11-94 (147)
6 3fov_A UPF0102 protein RPA0323 94.7 0.15 6.4E-06 30.0 7.8 63 13-76 25-93 (134)
7 2fco_A Recombination protein U 94.4 0.33 1.4E-05 27.9 10.7 76 11-87 34-137 (200)
8 1zp7_A Recombination protein U 94.1 0.38 1.6E-05 27.5 11.2 75 11-86 36-138 (206)
9 1cw0_A Protein (DNA mismatch e 92.2 0.56 2.4E-05 26.5 7.3 74 11-88 20-116 (155)
10 3dnx_A Uncharacterized protein 91.5 0.85 3.6E-05 25.4 7.6 77 8-85 10-86 (153)
11 2vld_A NUCS, UPF0286 protein p 90.8 0.42 1.7E-05 27.3 5.4 90 9-98 125-223 (251)
12 3h1t_A Type I site-specific re 85.8 2.2 9.4E-05 22.9 7.7 59 7-65 22-101 (590)
13 1vsr_A Protein (VSR endonuclea 84.6 2.6 0.00011 22.6 8.5 73 13-89 3-98 (136)
14 2w00_A HSDR, R.ECOR124I; ATP-b 77.5 4.6 0.00019 21.0 5.6 27 39-66 148-175 (1038)
15 1kl7_A Threonine synthase; thr 65.7 5.5 0.00023 20.5 3.7 41 60-100 185-226 (514)
16 1t0f_A Transposon TN7 transpos 58.7 7 0.00029 19.9 3.2 52 37-88 107-169 (276)
17 2ixs_A SDAI restriction endonu 56.5 12 0.00052 18.4 4.9 41 37-77 228-269 (323)
18 1rkq_A Hypothetical protein YI 45.2 19 0.00079 17.3 5.0 14 17-30 29-42 (282)
19 3hrl_A Endonuclease-like prote 44.7 19 0.00081 17.3 6.5 86 8-101 3-97 (104)
20 1xmx_A Hypothetical protein VC 44.4 18 0.00076 17.4 3.5 44 41-85 294-342 (385)
21 3af5_A Putative uncharacterize 40.4 19 0.0008 17.3 3.1 52 36-88 95-146 (651)
22 2v9k_A Uncharacterized protein 39.6 23 0.00097 16.8 6.8 72 11-84 316-390 (530)
23 3hdc_A Thioredoxin family prot 37.1 25 0.0011 16.5 4.8 43 36-82 112-154 (158)
24 3mpo_A Predicted hydrolase of 36.0 26 0.0011 16.4 6.4 13 18-30 30-42 (279)
25 2zfd_B Putative uncharacterize 35.3 26 0.0011 16.5 3.1 67 11-77 42-115 (123)
26 3k3p_A D-alanine--D-alanine li 35.2 27 0.0011 16.4 5.8 57 11-81 300-359 (383)
27 1vb3_A Threonine synthase; PLP 35.0 18 0.00077 17.4 2.3 38 60-100 158-198 (428)
28 3oa4_A Glyoxalase, BH1468 prot 31.1 32 0.0013 15.9 5.6 83 12-101 17-100 (161)
29 3niw_A Haloacid dehalogenase-l 30.9 32 0.0013 15.9 6.8 41 9-52 23-75 (279)
30 1rds_A Ribonuclease MS; hydrol 27.1 37 0.0016 15.5 3.3 20 35-55 69-88 (105)
31 3f9r_A Phosphomannomutase; try 24.9 41 0.0017 15.3 5.3 46 48-98 11-58 (246)
32 2c5k_T Syntaxin TLG1, T-snare 24.3 42 0.0018 15.2 3.0 38 65-102 15-52 (95)
33 3dnp_A Stress response protein 22.9 45 0.0019 15.0 5.9 22 7-30 22-43 (290)
34 1m0d_A Endonuclease, endodeoxy 21.2 49 0.002 14.8 4.4 61 12-79 6-74 (138)
35 3ira_A Conserved protein; meth 20.9 49 0.0021 14.8 3.0 51 7-57 55-122 (173)
36 1byy_A Protein (sodium channel 20.8 48 0.002 14.9 2.3 18 64-81 17-34 (53)
37 2pq0_A Hypothetical conserved 20.6 50 0.0021 14.7 5.0 73 6-84 18-103 (258)
No 1
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A
Probab=97.48 E-value=0.00066 Score=44.27 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCC-CCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHHH-HHCCC
Q ss_conf 9999999999997898999981-188-898743999906982999999768988---688999999999-97898
Q gi|254780128|r 12 KDVEKRLVTGAKKLDCWVRKAS-FVG-RRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEEL-RRRGQ 80 (103)
Q Consensus 12 ~~ie~~l~~~lk~~G~~~~K~~-~~g-~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l-~~~G~ 80 (103)
+..|+.++..+...|+.+++.. +.+ ..|.||++.. +++..++||||+-++. +++.|..-+..+ +..|.
T Consensus 7 ~~~Er~~~~~L~~~G~~v~r~~~s~~~~~g~iDiiA~-~~~~~~~IEvKs~~~~~iy~~~eqv~~l~~f~~~~g~ 80 (135)
T 1ob8_A 7 KNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFAT-KGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTM 80 (135)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEEE-ETTEEEEEEEEEESSSEEEECHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCEEECCHHHHHHHHHHHHHCCC
T ss_conf 9999999999996995899946778888899888995-3999999999963498252699999999999996385
No 2
>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A
Probab=97.13 E-value=0.005 Score=38.92 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCC--CCCCEEEEECCCCCEEEEEEECCCC-C--CCHHHHHHHHHH-HHCCCEEE
Q ss_conf 9999999999999978989999811888--9874399990698299999976898-8--688999999999-97898899
Q gi|254780128|r 10 TEKDVEKRLVTGAKKLDCWVRKASFVGR--RGCPDRLIITPNGGLWWIEVKKPTG-R--LSHQQMSEIEEL-RRRGQRVK 83 (103)
Q Consensus 10 ~E~~ie~~l~~~lk~~G~~~~K~~~~g~--~GvPDli~~~~~g~~~fIEvK~~~g-k--ls~~Q~~~~~~l-~~~G~~~~ 83 (103)
+=+..|+.+++.+..+|+.+.+.-..|. .+.||+++. +++..+.||||+-++ + ++++|...+-.. +..|...+
T Consensus 7 KG~~~ERel~~~l~~~G~~v~R~~~sg~~~~~~pDlia~-~~~~~~~IEvK~~~~~~iy~~~e~~eql~~~a~~~g~~p~ 85 (139)
T 2wcw_A 7 KGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAG-NGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAEAY 85 (139)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEBTTSSSCSSCCCSEEEE-CSSCEEEEEEEECSSSCEEEEHHHHHHHHHHHHHHTCEEE
T ss_pred HCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEE-CCCCEEEEEEEEECCCEEEECHHHHHHHHHHHHHCCCCEE
T ss_conf 034999999999986897699845566888899989953-7992899999872287053399999999999985799479
Q ss_pred EECC
Q ss_conf 9859
Q gi|254780128|r 84 VLVS 87 (103)
Q Consensus 84 Vv~s 87 (103)
++.-
T Consensus 86 la~K 89 (139)
T 2wcw_A 86 VALK 89 (139)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
No 3
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=97.10 E-value=0.0033 Score=40.03 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHH-HHHCCCEEEE
Q ss_conf 8999999999999997898999981188898743999906982999999768988---68899999999-9978988999
Q gi|254780128|r 9 QTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEE-LRRRGQRVKV 84 (103)
Q Consensus 9 ~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~-l~~~G~~~~V 84 (103)
.+=+..|+.+++.+...|+.+... ++ +|-||++.. +++.++.||||+.++. ++++|...+-. .+..|....|
T Consensus 3 rKG~~~ERel~~~l~~~Gf~v~R~--~g-Sg~~Dlia~-~~~~~~~IEvKs~~~~~iyv~~eq~~~l~~~a~~fg~~p~i 78 (123)
T 1gef_A 3 RKGAQAERELIKLLEKHGFAVVRS--AG-SKKVDLVAG-NGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVL 78 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEB--GG-GSSCSEEEE-CSSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEC--CC-CCCCCEEEC-CCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHCCCEEEE
T ss_conf 642089999999998589139986--79-999887701-69808999757656854887899999999999964997999
Q ss_pred EC
Q ss_conf 85
Q gi|254780128|r 85 LV 86 (103)
Q Consensus 85 v~ 86 (103)
+.
T Consensus 79 a~ 80 (123)
T 1gef_A 79 AV 80 (123)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 4
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=96.73 E-value=0.0071 Score=38.01 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEE-CCCC--CCCCEEEEECCCCCEEEEEEECCCC-----CCCHHHHHHHHHH-HHCCCE
Q ss_conf 99999999999997898999981-1888--9874399990698299999976898-----8688999999999-978988
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKAS-FVGR--RGCPDRLIITPNGGLWWIEVKKPTG-----RLSHQQMSEIEEL-RRRGQR 81 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~-~~g~--~GvPDli~~~~~g~~~fIEvK~~~g-----kls~~Q~~~~~~l-~~~G~~ 81 (103)
=...|+.+++.+...|+.|.+.. |++. .-.||++... ++..+-||||+..+ .++++|..-+..+ +..|..
T Consensus 8 G~~~ERelv~~l~~~Gf~v~R~p~SG~~~~~~~pDivA~~-~~~~~~IEvKs~k~~~~~lyv~~eqve~L~~f~~~fg~~ 86 (143)
T 1hh1_A 8 GSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGS 86 (143)
T ss_dssp -CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEC-CCEEEEEEEEECCCCCCEEEECHHHHHHHHHHHHHCCCE
T ss_conf 4499999999998599408980345788878887389854-986999999981488611776799999999999974998
Q ss_pred EEEEC
Q ss_conf 99985
Q gi|254780128|r 82 VKVLV 86 (103)
Q Consensus 82 ~~Vv~ 86 (103)
..++.
T Consensus 87 ~~iav 91 (143)
T 1hh1_A 87 LFLGV 91 (143)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
No 5
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=96.70 E-value=0.0081 Score=37.67 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEE-ECCC--CCCCCEEEEECCCCCEEEEEEECCC-CC---CCHHHHHHHHHH-HHCCCEE
Q ss_conf 9999999999999789899998-1188--8987439999069829999997689-88---688999999999-9789889
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKA-SFVG--RRGCPDRLIITPNGGLWWIEVKKPT-GR---LSHQQMSEIEEL-RRRGQRV 82 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~-~~~g--~~GvPDli~~~~~g~~~fIEvK~~~-gk---ls~~Q~~~~~~l-~~~G~~~ 82 (103)
=+..|+.+++.+..+|..+.+. .|++ ....||+++.. ++..+.||||+-+ |+ +++.|...+... +..|...
T Consensus 11 G~~~ERelv~~L~~~Gf~~~R~~~Sg~~~~~~~pDlia~~-~~~~~~IEvKs~k~~~~iy~~~eq~e~l~~fa~~~G~~p 89 (147)
T 2eo0_A 11 GSSVERYIVSRLRDKGFAVIRAPASGSKRKDHVPDIIALK-SGVIILIEVKSRKNGQKIYIEKEQAEGIREFAKRSGGEL 89 (147)
T ss_dssp -CHHHHHHHHHHHHTTCEEECC-----CCGGGSCSEEEEE-TTEEEEEEEEECCCC-CEEECHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEECC-CCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 1799999999999679104880344688878998189417-984999999973689722259999999999999779948
Q ss_pred EEECC
Q ss_conf 99859
Q gi|254780128|r 83 KVLVS 87 (103)
Q Consensus 83 ~Vv~s 87 (103)
.++.-
T Consensus 90 ~ia~K 94 (147)
T 2eo0_A 90 FLGVK 94 (147)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
No 6
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009}
Probab=94.70 E-value=0.15 Score=29.95 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECC------CCCCCHHHHHHHHHHH
Q ss_conf 999999999997898999981188898743999906982999999768------9886889999999999
Q gi|254780128|r 13 DVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKP------TGRLSHQQMSEIEELR 76 (103)
Q Consensus 13 ~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~------~gkls~~Q~~~~~~l~ 76 (103)
.-|.....+|++.|+.++.--.-.+.|==|||.. .++.++|||||+- ...+++.|+..+.+..
T Consensus 25 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDLIa~-~~~~lvFVEVK~R~~~~~~~~~v~~~K~~ri~~aA 93 (134)
T 3fov_A 25 SAEASAADYLERQGYRILARRFKTRCGEIDLVAQ-RDALVAFVEVKARGNVDDAAYAVTPRQQSRIVAAA 93 (134)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEE-ETTEEEEEEEEEC------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE-ECCEEEEEEEEEECCCCCHHHCCCHHHHHHHHHHH
T ss_conf 9999999999987999901013579996088998-49999999999703789976718999999999999
No 7
>2fco_A Recombination protein U (penicillin-binding protein related factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus HTA426} PDB: 1y1o_A
Probab=94.36 E-value=0.33 Score=27.91 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCEEEEECCCCCEEEEEEECCCC-------
Q ss_conf 9999999999999789899998118---------------------889874399990698299999976898-------
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFV---------------------GRRGCPDRLIITPNGGLWWIEVKKPTG------- 62 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~---------------------g~~GvPDli~~~~~g~~~fIEvK~~~g------- 62 (103)
|..|......++...=+.+.|.-.| ..+.-||....+ .|+++..|.|...+
T Consensus 34 E~~IN~tn~~Y~~~~iA~I~KkPtPi~ivkv~~~~r~~a~I~~Ayf~~kSt~DY~Gvy-kG~~I~FEAKeT~nkt~Fpl~ 112 (200)
T 2fco_A 34 EDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFPLK 112 (200)
T ss_dssp HHHHHHHHHHHHHTTSCEEEECCCCC-----------------CCCCCCSSCSEEEEE-TTEEEEEEEEEESCSSEEEGG
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCEEEECCCCCCCCCEEEEEEECCCCCCCCEEEE-CCEEEEEECCCCCCCCCCCHH
T ss_conf 9999999999997797999972788079850576556651577995578878700477-789999984333567623222
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 8688999999999978988999859
Q gi|254780128|r 63 RLSHQQMSEIEELRRRGQRVKVLVS 87 (103)
Q Consensus 63 kls~~Q~~~~~~l~~~G~~~~Vv~s 87 (103)
.+.++|...++.+..+|+.++++=.
T Consensus 113 nI~~HQi~~L~~~~~~gGiaFiiI~ 137 (200)
T 2fco_A 113 NFHAHQIRHMEQVVAHGGICFAILR 137 (200)
T ss_dssp GSCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 0749999999999978998999999
No 8
>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A
Probab=94.07 E-value=0.38 Score=27.54 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCEEEEECCCCCEEEEEEECCCC-------
Q ss_conf 9999999999999789899998118---------------------889874399990698299999976898-------
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFV---------------------GRRGCPDRLIITPNGGLWWIEVKKPTG------- 62 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~---------------------g~~GvPDli~~~~~g~~~fIEvK~~~g------- 62 (103)
|..|......+....=+.+.|.-.| ..+.-||...++ .|+++..|.|...+
T Consensus 36 E~~IN~tn~~Y~~~~iAvI~KkPtPi~ivkv~~~~r~~a~I~~Ayf~~kSt~DY~Gvy-kG~~I~FEAKeT~nkt~Fpl~ 114 (206)
T 1zp7_A 36 EDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFPLQ 114 (206)
T ss_dssp HHHHHHHHHHHHHTTSCEEEECCCCCCSCC-------------CCCCCCSSCSEEEEE-TTEEEEEEEEECCCSSEEEGG
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEE-CCEEEEEECCCCCCCCCCCHH
T ss_conf 9999999999997796899960788189950576566644667896457878710367-789999982344576722524
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 868899999999997898899985
Q gi|254780128|r 63 RLSHQQMSEIEELRRRGQRVKVLV 86 (103)
Q Consensus 63 kls~~Q~~~~~~l~~~G~~~~Vv~ 86 (103)
.+.++|...++.+.++|+.++++=
T Consensus 115 nI~~HQi~~L~~~~~~gGIaFiii 138 (206)
T 1zp7_A 115 NFHDHQIEHMKQVKAQDGICFVII 138 (206)
T ss_dssp GSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 375999999999997899899999
No 9
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=92.20 E-value=0.56 Score=26.53 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECC---------CCCCCHHHH------------
Q ss_conf 99999999999997898999981188898743999906982999999768---------988688999------------
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKP---------TGRLSHQQM------------ 69 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~---------~gkls~~Q~------------ 69 (103)
+...|..+-+.|.+.|..+. ...+.-+|.||+ ++.... .-|||-.- ...|..+..
T Consensus 20 dT~pE~~v~~~L~~~G~r~r-~~~~~~pg~pDi-v~~~~k--~aIfvdGcfWH~~~c~~~~~p~~n~~~W~~K~~~n~~R 95 (155)
T 1cw0_A 20 DTAIEKRLASLLTGQGLAFR-VQDASLPGRPDF-VVDEYR--CVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVER 95 (155)
T ss_dssp SCHHHHHHHHHHHHTTCCCE-ECCTTSTTCCSE-EEGGGT--EEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEE-ECCCCCCCEEEE-EECCCC--EEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999997898899-546778983559-964762--36754621775224344789987488999998777886
Q ss_pred --HHHHHHHHCCCEEEEECCH
Q ss_conf --9999999789889998598
Q gi|254780128|r 70 --SEIEELRRRGQRVKVLVSM 88 (103)
Q Consensus 70 --~~~~~l~~~G~~~~Vv~s~ 88 (103)
...+.|+++|+.+.+++.-
T Consensus 96 D~~~~~~L~~~GW~vlriWEc 116 (155)
T 1cw0_A 96 DRRDISRLQELGWRVLIVWEC 116 (155)
T ss_dssp HHHHHHHHHHTTCEEEEEEHH
T ss_pred HHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999797989998485
No 10
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=91.54 E-value=0.85 Score=25.44 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 889999999999999978989999811888987439999069829999997689886889999999999789889998
Q gi|254780128|r 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVL 85 (103)
Q Consensus 8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv 85 (103)
.+..+.|.+.+.+.+..+|..++.-.+....-=-|++.+-++|.++.||+|+...-.+.+ ++|.+.+.-.....+.+
T Consensus 10 ~~p~q~i~RGv~R~l~~~g~a~l~E~~l~~grRaDv~al~~~Gei~IVEiKSS~aDF~~D-~KW~~Yl~~cDrfyfAv 86 (153)
T 3dnx_A 10 LQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVMGLGPKGEIWVIECKSSRADFQAD-AKWQGYLEWCDRYFWAV 86 (153)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEEEEECTTCCEEEEEECSSHHHHHHT-TTGGGGGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCHHHHCCC-CCHHHHHHHHHEEEEEC
T ss_conf 777889999999999978995666761699977889998899969999984778896154-55377887632456614
No 11
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=90.76 E-value=0.42 Score=27.33 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCC-HHH-HHHHHHHHH-CCCEE-
Q ss_conf 89999999999999978--9899998118889874399990698299999976898868-899-999999997-89889-
Q gi|254780128|r 9 QTEKDVEKRLVTGAKKL--DCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLS-HQQ-MSEIEELRR-RGQRV- 82 (103)
Q Consensus 9 ~~E~~ie~~l~~~lk~~--G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls-~~Q-~~~~~~l~~-~G~~~- 82 (103)
.+|+++|..|......+ |.....-..+-..|.-|++..-++|+++-||+|+.++.+. -.| ..+.+.+++ .+..+
T Consensus 125 G~E~dLq~~L~~n~~~i~~G~~~v~rE~~t~~G~iDll~~D~~g~~VvIElKr~~~~~~~V~QL~rYv~~lr~~~~~~Vr 204 (251)
T 2vld_A 125 GSEAEMANLIFENPRVIEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELKRRKADLHAVSQMKRYVDSLKEEYGENVR 204 (251)
T ss_dssp -CHHHHHHHHHHCGGGTCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred ECHHHHHHHHHHCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 40999999998699986789789999884288965589990799999999970479860799999999998740699826
Q ss_pred --EEECC-HHHHHHHHHHH
Q ss_conf --99859-89999999999
Q gi|254780128|r 83 --KVLVS-MEEVDNFLEEL 98 (103)
Q Consensus 83 --~Vv~s-~edv~~~l~~l 98 (103)
.|+.+ -+++.+++++.
T Consensus 205 GIlvA~~it~~a~~ll~~~ 223 (251)
T 2vld_A 205 GILVAPSLTEGAKKLLEKE 223 (251)
T ss_dssp EEEEESCBCHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHC
T ss_conf 9998686998999999978
No 12
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=85.82 E-value=2.2 Score=22.90 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHH-HHHHCCCE-----EE---EE-------EC----CCCCCCCEEEEECCCCCE-EEEEEECCCCCCC
Q ss_conf 48899999999999-99978989-----99---98-------11----888987439999069829-9999976898868
Q gi|254780128|r 7 HYQTEKDVEKRLVT-GAKKLDCW-----VR---KA-------SF----VGRRGCPDRLIITPNGGL-WWIEVKKPTGRLS 65 (103)
Q Consensus 7 h~~~E~~ie~~l~~-~lk~~G~~-----~~---K~-------~~----~g~~GvPDli~~~~~g~~-~fIEvK~~~gkls 65 (103)
+-++|++.-+.+++ +|+..||- +. .+ .+ .|..|-||.++++.+|.. .-||+|+.+..+.
T Consensus 22 ~~~~e~~t~~~~id~~l~~agw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~~ng~pl~viE~K~~~~~~~ 101 (590)
T 3h1t_A 22 MALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPENSPVG 101 (590)
T ss_dssp CSCCHHHHHHHTHHHHHHHTTTTSTTCEEEEEEECCCCCEEEETTEEEECCCCEEEEEEEEETTEEEEEEEECCTTSCGG
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHH
T ss_conf 78999999999748999977999887620689951576365268756668878664899867992999997678978989
No 13
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli K12} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=84.57 E-value=2.6 Score=22.55 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECC---------CCCCCHHHH--------------
Q ss_conf 999999999997898999981188898743999906982999999768---------988688999--------------
Q gi|254780128|r 13 DVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKP---------TGRLSHQQM-------------- 69 (103)
Q Consensus 13 ~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~---------~gkls~~Q~-------------- 69 (103)
+.|..+.+.|.+.|.. |+...+.-+|.|| |++..-.-+ |+|-.- ...|..++.
T Consensus 3 kpE~~vr~~L~~~G~r-yR~~~k~lpg~PD-iv~~k~k~a--IfVdGcFWH~h~c~~~~~Pktn~~fW~~Ki~~N~~RD~ 78 (136)
T 1vsr_A 3 AIEKRLASLLTGQGLA-FRVQDASLPGRPD-FVVDEYRCV--IFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDR 78 (136)
T ss_dssp CCCHHHHHHHHHTTCC-CEESCTTSTTCCS-EEEGGGTEE--EEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCE-EEECCCCCCCCCC-EEECCCCEE--EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 5999999999978985-8963788999988-974587589--99847503689976578998758999999988899899
Q ss_pred HHHHHHHHCCCEEEEECCHH
Q ss_conf 99999997898899985989
Q gi|254780128|r 70 SEIEELRRRGQRVKVLVSME 89 (103)
Q Consensus 70 ~~~~~l~~~G~~~~Vv~s~e 89 (103)
...+.|+++|+.|.+++.-|
T Consensus 79 ~~~~~L~~~Gw~Vl~iWEce 98 (136)
T 1vsr_A 79 RDISRLQELGWRVLIVWECA 98 (136)
T ss_dssp HHHHHHHHTTCEEEEEEHHH
T ss_pred HHHHHHHHCCCEEEEEEECC
T ss_conf 99999998889899996064
No 14
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=77.49 E-value=4.6 Score=21.04 Aligned_cols=27 Identities=30% Similarity=0.182 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCE-EEEEEECCCCCCCH
Q ss_conf 87439999069829-99999768988688
Q gi|254780128|r 39 GCPDRLIITPNGGL-WWIEVKKPTGRLSH 66 (103)
Q Consensus 39 GvPDli~~~~~g~~-~fIEvK~~~gkls~ 66 (103)
--||+.++. +|-. ..||+|+++..+..
T Consensus 148 ~r~Divlfv-NGlPl~~iE~K~~~~~~~~ 175 (1038)
T 2w00_A 148 NRYDVTILV-NGLPLVQIELKKRGVAIRE 175 (1038)
T ss_dssp CCCEEEEEE-TTEEEEEEEECCTTCCHHH
T ss_pred EEEEEEEEE-CCCEEEEEEECCCCCCHHH
T ss_conf 146899998-8805688883669799999
No 15
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=65.71 E-value=5.5 Score=20.52 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHHHH
Q ss_conf 89886889999999999789889998-598999999999986
Q gi|254780128|r 60 PTGRLSHQQMSEIEELRRRGQRVKVL-VSMEEVDNFLEELAC 100 (103)
Q Consensus 60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv-~s~edv~~~l~~l~~ 100 (103)
|.|+.|+-|+..+.-..+.+..+.-| -++||++.++.++-.
T Consensus 185 P~g~vS~iQ~~Qmtt~~~~Nv~~i~v~G~FDDcQ~~VK~~f~ 226 (514)
T 1kl7_A 185 PTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFG 226 (514)
T ss_dssp ETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHC
T ss_conf 687875436887412279988999954786998799999850
No 16
>1t0f_A Transposon TN7 transposition protein TNSA; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli} SCOP: a.4.5.27 c.52.1.16 PDB: 1f1z_A
Probab=58.66 E-value=7 Score=19.92 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCCCC-----EEEEECCCCC--EEEEEEECCCC--CCCHHHH--HHHHHHHHCCCEEEEECCH
Q ss_conf 89874-----3999906982--99999976898--8688999--9999999789889998598
Q gi|254780128|r 37 RRGCP-----DRLIITPNGG--LWWIEVKKPTG--RLSHQQM--SEIEELRRRGQRVKVLVSM 88 (103)
Q Consensus 37 ~~GvP-----Dli~~~~~g~--~~fIEvK~~~g--kls~~Q~--~~~~~l~~~G~~~~Vv~s~ 88 (103)
.+|+| |+++...+|. .+.+|+|.... +++-.++ ......+..|....++...
T Consensus 107 ~~g~~~v~t~Dflv~~~~g~~~~~a~~vK~~~~l~~~r~~eKleier~yw~~~Gi~~~ivTe~ 169 (276)
T 1t0f_A 107 IRGVDQVMSTDFLVDCKDGPFEQFAIQVKPAAALQDERTLEKLELERRYWQQKQIPWFIFTDK 169 (276)
T ss_dssp ETTEECCCEEEEEEEESSSSCSEEEEEECCGGGGGCHHHHHHHHHHHHHHHHHTCCEEEECGG
T ss_pred CCCCCEEECCCEEEEEECCCEEEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899712770357999977971499999323455218658999999999999749808998367
No 17
>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
Probab=56.46 E-value=12 Score=18.39 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCCCCE-EEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 8987439999069829-9999976898868899999999997
Q gi|254780128|r 37 RRGCPDRLIITPNGGL-WWIEVKKPTGRLSHQQMSEIEELRR 77 (103)
Q Consensus 37 ~~GvPDli~~~~~g~~-~fIEvK~~~gkls~~Q~~~~~~l~~ 77 (103)
+.-.||+++..++..+ +|||+=+..|-+++.-+..+.+|-.
T Consensus 228 h~klPDvVL~d~~~~wL~~IEaVtS~GPv~~~R~~eL~~l~~ 269 (323)
T 2ixs_A 228 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFA 269 (323)
T ss_dssp TCCCCSEEEEETTTTEEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 567998899828999899999974779989899999999973
No 18
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=45.20 E-value=19 Score=17.31 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=8.2
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99999997898999
Q gi|254780128|r 17 RLVTGAKKLDCWVR 30 (103)
Q Consensus 17 ~l~~~lk~~G~~~~ 30 (103)
..++.++..|..+.
T Consensus 29 ~~l~~l~~~gi~v~ 42 (282)
T 1rkq_A 29 NAIAAARARGVNVV 42 (282)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCCEEE
T ss_conf 99999998899999
No 19
>3hrl_A Endonuclease-like protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}
Probab=44.69 E-value=19 Score=17.26 Aligned_cols=86 Identities=14% Similarity=0.033 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCC---CCCCHHHHHHHHHHHHCCCE
Q ss_conf 889999999999999978---989999811888987439999069829999997689---88688999999999978988
Q gi|254780128|r 8 YQTEKDVEKRLVTGAKKL---DCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPT---GRLSHQQMSEIEELRRRGQR 81 (103)
Q Consensus 8 ~~~E~~ie~~l~~~lk~~---G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~---gkls~~Q~~~~~~l~~~G~~ 81 (103)
.|+|+ |..+-..+++. |+.+.. ..+-.+.++|+ ++ ++.+ +.||+=.+- ..-++ ...-..|+.+|+.
T Consensus 3 ~~t~a--E~~L~~~Lr~~~~~g~k~~~-Q~~ig~y~~Df-~~-~~~k-l~IE~DG~~H~~~~~~D--~~Rd~~L~~~Gw~ 74 (104)
T 3hrl_A 3 AMSEA--EAKLWQHLRAGRLNGYKFRR-QQPMGNYIVDF-MC-VTPK-LIVEADGGQHAEQAVYD--HARTVYLNSLGFT 74 (104)
T ss_dssp CCCHH--HHHHHHHHGGGTTTTCCEEE-EEEETTEEEEE-EE-TTTT-EEEEEEC-------CCC--HHHHHHHHHTTCE
T ss_pred CCCHH--HHHHHHHHHHCCCCCCEEEE-CCCCCCEEEEE-EC-CCCC-EEEEEECCCCCCCHHHH--HHHHHHHHHCCCE
T ss_conf 89999--99999999846757987771-06778768707-55-7669-89999884104421038--9999999989998
Q ss_pred EEEECCHH---HHHHHHHHHHHH
Q ss_conf 99985989---999999999863
Q gi|254780128|r 82 VKVLVSME---EVDNFLEELACT 101 (103)
Q Consensus 82 ~~Vv~s~e---dv~~~l~~l~~t 101 (103)
+.-+..-| +.+.++++|...
T Consensus 75 VlR~~~~dv~~~~~~v~~~I~~~ 97 (104)
T 3hrl_A 75 VLRFWNHEILQQTNDVLAEILRV 97 (104)
T ss_dssp EEEEEHHHHHHCHHHHHHHHHHH
T ss_pred EEEEEHHHHHHCHHHHHHHHHHH
T ss_conf 99971999985999999999999
No 20
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=44.35 E-value=18 Score=17.42 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=23.4
Q ss_pred CEEEEECCCCCEEEEEEECCCCCC-CHHHHHHH----HHHHHCCCEEEEE
Q ss_conf 439999069829999997689886-88999999----9999789889998
Q gi|254780128|r 41 PDRLIITPNGGLWWIEVKKPTGRL-SHQQMSEI----EELRRRGQRVKVL 85 (103)
Q Consensus 41 PDli~~~~~g~~~fIEvK~~~gkl-s~~Q~~~~----~~l~~~G~~~~Vv 85 (103)
=|+++. .+++.++||||+.+-+- ......-+ +.|......+..|
T Consensus 294 lDV~~~-~~~~l~~iECKtg~~~~~~~~~l~kl~~~~~~lgG~~~~~~LV 342 (385)
T 1xmx_A 294 LDVATV-VNNKLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLV 342 (385)
T ss_dssp EEEEEE-ETTEEEEEEEESSCCCC-CCCHHHHHHHHHHHHHGGGCEEEEE
T ss_pred EEEEEE-ECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 689999-7999999996778878654889999999999829843349999
No 21
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=40.41 E-value=19 Score=17.28 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCH
Q ss_conf 88987439999069829999997689886889999999999789889998598
Q gi|254780128|r 36 GRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSM 88 (103)
Q Consensus 36 g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~s~ 88 (103)
-.+|+-| +.+-++-.-+.||+|.|+--.........+-.++.|+...|++++
T Consensus 95 ~~~~~~~-~~f~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 146 (651)
T 3af5_A 95 KEAEITN-IAFDPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVRTP 146 (651)
T ss_dssp GGGCCCE-EEEETTTTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEEECC
T ss_pred CCCCCEE-EEECCCCCEEEEEECCCEEEECCCCHHHHHHHHHHCCEEEEEECC
T ss_conf 7667125-897489727999967974686476268999999749856898679
No 22
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens}
Probab=39.61 E-value=23 Score=16.78 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC-CCHHHHHH-HHHHHHCCCEEEE
Q ss_conf 99999999999997-898999981188898743999906982999999768988-68899999-9999978988999
Q gi|254780128|r 11 EKDVEKRLVTGAKK-LDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR-LSHQQMSE-IEELRRRGQRVKV 84 (103)
Q Consensus 11 E~~ie~~l~~~lk~-~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk-ls~~Q~~~-~~~l~~~G~~~~V 84 (103)
|.-+|.-+...+.. .++--++|.+.|+--+-=+++ . +||.|.+|++.|.-+ ++..+... .++++.....+.|
T Consensus 316 ~~SVee~I~~~i~~~f~~~~~~fh~sGREDiDVRmL-G-~GRPFv~Ei~nP~r~~~~~~~l~~l~~~iN~~~~~V~v 390 (530)
T 2v9k_A 316 ESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTL-G-NGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQV 390 (530)
T ss_dssp SCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEE-E-EEEEEEEEEESCSCCCCCHHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEC-C-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 778899988999987089834896357566641322-7-99826999468854778889999999998504995899
No 23
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=37.13 E-value=25 Score=16.54 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 88987439999069829999997689886889999999999789889
Q gi|254780128|r 36 GRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRV 82 (103)
Q Consensus 36 g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~ 82 (103)
+-.|+|+.+++-++|++.+... |....+....++.|++..+..
T Consensus 112 ~v~~~P~~~lid~~G~i~~~~~----G~~~~~~~~~~~~l~~L~g~~ 154 (158)
T 3hdc_A 112 GANRLPDTFIVDRKGIIRQRVT----GGIEWDAPKVVSYLKSLEGHH 154 (158)
T ss_dssp TCCSSSEEEEECTTSBEEEEEE----SCCCTTSHHHHHHHHTTC---
T ss_pred CCCCCCEEEEECCCCEEEEEEE----CCCCCCHHHHHHHHHHCCCCC
T ss_conf 9983687999979999999996----999989999999999778988
No 24
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis}
Probab=36.02 E-value=26 Score=16.43 Aligned_cols=13 Identities=31% Similarity=0.085 Sum_probs=6.9
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999997898999
Q gi|254780128|r 18 LVTGAKKLDCWVR 30 (103)
Q Consensus 18 l~~~lk~~G~~~~ 30 (103)
.+.++++.|..+.
T Consensus 30 al~~l~~~g~~v~ 42 (279)
T 3mpo_A 30 AVQAAKAQGIKVV 42 (279)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999998899999
No 25
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP- binding, kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=35.30 E-value=26 Score=16.45 Aligned_cols=67 Identities=22% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEC-----CCCCCCCEEE--EECCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999999978989999811-----8889874399--990698299999976898868899999999997
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASF-----VGRRGCPDRL--IITPNGGLWWIEVKKPTGRLSHQQMSEIEELRR 77 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~-----~g~~GvPDli--~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~ 77 (103)
=+.|-.++-..++.+|..+.|-.. .|+.|.=-+. ++.---.++.||+|..+|-..+.++.|-+.|+-
T Consensus 42 a~~Ii~klEe~a~~~~~~v~kk~~~~~~leg~kG~l~v~~EVfevtpsl~vVEvkK~~GD~~ey~~f~~~~lrp 115 (123)
T 2zfd_B 42 AERVVERLEEIVSAENLTVAKKETWGMKIEGQKGNFAMVVEINQLTDELVMIEVRKRQRAAASGRDLWTDTLRP 115 (123)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTEEEEEEGGGTEEEEEEEEECSSSCEEEEEEEEESCC---CCHHHHTHHH
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHCCH
T ss_conf 99999999999871782899832605886025762789999998147008999873478738999999986137
No 26
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=35.22 E-value=27 Score=16.36 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--EEEEECCCCCEEEEEEEC-CCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 9999999999999789899998118889874--399990698299999976-8988688999999999978988
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFVGRRGCP--DRLIITPNGGLWWIEVKK-PTGRLSHQQMSEIEELRRRGQR 81 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvP--Dli~~~~~g~~~fIEvK~-~~gkls~~Q~~~~~~l~~~G~~ 81 (103)
..+|++..++..+++|| +|+. |.++ .++|.++++|+-+ |+=.++ -.+-..++..|..
T Consensus 300 ~~~i~~~A~ka~~~Lg~----------~g~~RiDf~l-d~dg~~y~lEvNt~PGlt~~---S~~p~~a~~~G~s 359 (383)
T 3k3p_A 300 VEKMRDYAATAFRTLGC----------CGLSRCDFFL-TEDGKVYLNELNTMPGFTQW---SMYPLLWENMGLS 359 (383)
T ss_dssp HHHHHHHHHHHHHHTTC----------CEEEEEEEEE-CTTCCEEEEEEESSCCCC-----CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCC----------CCEEEEEEEE-ECCCCEEEEEEECCCCCCCC---CHHHHHHHHHCCC
T ss_conf 99999999999998499----------5279899999-38996899986198998866---7899999980999
No 27
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=35.02 E-value=18 Score=17.37 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHHHH
Q ss_conf 8988688999999999978988999---8598999999999986
Q gi|254780128|r 60 PTGRLSHQQMSEIEELRRRGQRVKV---LVSMEEVDNFLEELAC 100 (103)
Q Consensus 60 ~~gkls~~Q~~~~~~l~~~G~~~~V---v~s~edv~~~l~~l~~ 100 (103)
|.|+.|+-|+..+.. .|..+.+ =-++||++.++.++-.
T Consensus 158 P~g~vS~~Q~~Qmtt---~~~nv~~i~V~G~fDDcq~lvk~~~~ 198 (428)
T 1vb3_A 158 PRGKISPLQEKLFCT---LGGNIETVAIDGDFDACQALVKQAFD 198 (428)
T ss_dssp ETTCSCHHHHHHHHS---CCTTEEEEEEESCHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 887762677764001---45877898168997899999999851
No 28
>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-2; 1.94A {Bacillus halodurans}
Probab=31.14 E-value=32 Score=15.95 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEECCHHH
Q ss_conf 999999999999789899998118889874399990698299999976898868899999999997-8988999859899
Q gi|254780128|r 12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRR-RGQRVKVLVSMEE 90 (103)
Q Consensus 12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~-~G~~~~Vv~s~ed 90 (103)
.+++..+..+.+.+|.....-......|+.- ++...|. ..||+=.|.+.-++... .+.. .++..+++..++|
T Consensus 17 ~Dle~a~~fY~~~LG~~~~~~~~~~~~~~~~--~~~~~g~-~~ieLiep~~~~~~~~~----~~~~~g~G~~Hiaf~VdD 89 (161)
T 3oa4_A 17 TSIKDVLPFYVGSLKLKLLGMEDLPSQGVKI--AFLEIGE-SKIELLEPLSEESPIAK----FIQKRGEGIHHIAIGVKS 89 (161)
T ss_dssp SCHHHHHHHHHHTSCCEEEEEEEEGGGTEEE--EEEEETT-EEEEEEEESSTTSHHHH----HHHHHCSEEEEEEEECSC
T ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCEEE--EEECCCC-CEEEECCCCCCCCCCCC----CCCCCCCCCEEEECCCCC
T ss_conf 9999999999985099787877126786599--9722652-02784156567995201----123589851685733689
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999863
Q gi|254780128|r 91 VDNFLEELACT 101 (103)
Q Consensus 91 v~~~l~~l~~t 101 (103)
+++.++.|.+-
T Consensus 90 i~~~~~~L~~~ 100 (161)
T 3oa4_A 90 IEERIQEVKEN 100 (161)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999988
No 29
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=30.91 E-value=32 Score=15.92 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEC------------CCCCCCCEEEEECCCCCE
Q ss_conf 89999999999999978989999811------------888987439999069829
Q gi|254780128|r 9 QTEKDVEKRLVTGAKKLDCWVRKASF------------VGRRGCPDRLIITPNGGL 52 (103)
Q Consensus 9 ~~E~~ie~~l~~~lk~~G~~~~K~~~------------~g~~GvPDli~~~~~g~~ 52 (103)
++|..+ +.+.++++.|..+.=.++ -+-.+.||.+++.. |..
T Consensus 23 i~~~~~--~al~~l~~~g~~v~i~TGR~~~~~~~~~~~~~~~~~~~~~i~~n-Ga~ 75 (279)
T 3niw_A 23 ISSRNR--ETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYN-GGE 75 (279)
T ss_dssp CCHHHH--HHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGG-GTE
T ss_pred CCHHHH--HHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEC-CEE
T ss_conf 399999--99999997899999999998899999998717666787089958-909
No 30
>1rds_A Ribonuclease MS; hydrolase(endoribonuclease); HET: GPC; 1.80A {Aspergillus phoenicis} SCOP: d.1.1.4 PDB: 1rms_A*
Probab=27.09 E-value=37 Score=15.52 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=14.1
Q ss_pred CCCCCCCEEEEECCCCCEEEE
Q ss_conf 888987439999069829999
Q gi|254780128|r 35 VGRRGCPDRLIITPNGGLWWI 55 (103)
Q Consensus 35 ~g~~GvPDli~~~~~g~~~fI 55 (103)
++.+| |||+|+-.++.+..+
T Consensus 69 GgsPG-~dRVI~~~~~~~~G~ 88 (105)
T 1rds_A 69 GGSPG-ADRVIFNGDDELAGV 88 (105)
T ss_dssp SSCCC-SEEEEEETTCCEEEE
T ss_pred CCCCC-CCEEEECCCCCEEEE
T ss_conf 89988-877998588877889
No 31
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Probab=24.94 E-value=41 Score=15.28 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=34.2
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHH
Q ss_conf 69829999997689886889999999999789889998--5989999999999
Q gi|254780128|r 48 PNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVL--VSMEEVDNFLEEL 98 (103)
Q Consensus 48 ~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv--~s~edv~~~l~~l 98 (103)
-||..+ .+++++++.....+++|++.|..+.+| |+...+.+.+.++
T Consensus 11 lDGTLl-----~~~~~i~~~~~~ai~~l~~~g~~v~~~TGR~~~~~~~~~~~~ 58 (246)
T 3f9r_A 11 VDGTLT-----PPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQLGRD 58 (246)
T ss_dssp SBTTTB-----STTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHCTT
T ss_pred CCCCCC-----CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 337820-----899988999999999999689999998899989878888875
No 32
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=24.30 E-value=42 Score=15.20 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 88999999999978988999859899999999998630
Q gi|254780128|r 65 SHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTL 102 (103)
Q Consensus 65 s~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~l~~t~ 102 (103)
+..|...+...-+..-...-..+.+++.++++++..|+
T Consensus 15 T~EQ~~RL~q~L~r~~~~~~~~~~~Ev~EIv~di~ETi 52 (95)
T 2c5k_T 15 TKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETI 52 (95)
T ss_dssp HHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986035775346899999999999999
No 33
>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis}
Probab=22.95 E-value=45 Score=15.04 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 488999999999999997898999
Q gi|254780128|r 7 HYQTEKDVEKRLVTGAKKLDCWVR 30 (103)
Q Consensus 7 h~~~E~~ie~~l~~~lk~~G~~~~ 30 (103)
+.+++..++ .++.+++.|..+.
T Consensus 22 ~~i~~~~~~--al~~l~~~Gi~v~ 43 (290)
T 3dnp_A 22 GKIHQATKD--AIEYVKKKGIYVT 43 (290)
T ss_dssp SCCCHHHHH--HHHHHHHTTCEEE
T ss_pred CCCCHHHHH--HHHHHHHCCCEEE
T ss_conf 936999999--9999997899899
No 34
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=21.16 E-value=49 Score=14.82 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHCCCEE------EEEECC--CCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999999999999789899------998118--88987439999069829999997689886889999999999789
Q gi|254780128|r 12 KDVEKRLVTGAKKLDCWV------RKASFV--GRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRG 79 (103)
Q Consensus 12 ~~ie~~l~~~lk~~G~~~------~K~~~~--g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G 79 (103)
+.+|..+...|+..|.-+ +..+-+ .+.=.||.+ +|+| ++||+| |+..+.-+.-|..++++.
T Consensus 6 SglE~~vA~~L~~~gi~~~YE~~ki~Y~~p~~~~~YtPDF~--Lpng--i~IE~K---G~f~~~DR~K~~~vk~q~ 74 (138)
T 1m0d_A 6 SGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFL--LPNG--IFVETK---GLWESDDRKKHLLIREQH 74 (138)
T ss_dssp CHHHHHHHHHHHHTTCCCEESCEEEEEEECCEEEEECCSEE--CTTS--CEEEEE---SSCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCCCCEEECCCEEEEEECCCCCEECCCEE--CCCC--EEEEEE---CCCCHHHHHHHHHHHHHC
T ss_conf 17899999999887997895365376562051211527777--0588--799973---245726789999999879
No 35
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, PSI, MCSG, protein structure initiative; 2.10A {Methanosarcina mazei GO1}
Probab=20.89 E-value=49 Score=14.79 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEC-----------------CCCCCCCEEEEECCCCCEEEEEE
Q ss_conf 4889999999999999978989999811-----------------88898743999906982999999
Q gi|254780128|r 7 HYQTEKDVEKRLVTGAKKLDCWVRKASF-----------------VGRRGCPDRLIITPNGGLWWIEV 57 (103)
Q Consensus 7 h~~~E~~ie~~l~~~lk~~G~~~~K~~~-----------------~g~~GvPDli~~~~~g~~~fIEv 57 (103)
|.|.+..+++.-+...-...-...|+.. .|..|+|=-+++.|+|+.+|.--
T Consensus 55 ~vm~~etf~d~eva~~lN~~FV~VkvDree~pdld~~y~~~~q~~~g~gGwPl~vfltPdg~Pf~~gT 122 (173)
T 3ira_A 55 HMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGT 122 (173)
T ss_dssp HHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEEES
T ss_pred HHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEC
T ss_conf 99888741899999999736089886622080089999999999618999783556648996247631
No 36
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=20.78 E-value=48 Score=14.86 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHCCCE
Q ss_conf 688999999999978988
Q gi|254780128|r 64 LSHQQMSEIEELRRRGQR 81 (103)
Q Consensus 64 ls~~Q~~~~~~l~~~G~~ 81 (103)
+|+.|+.|.+.++.++..
T Consensus 17 mT~eQkkw~~~~K~l~~~ 34 (53)
T 1byy_A 17 MTEEQKKYYNAMKKLGSK 34 (53)
T ss_dssp CCHHHHHHHHHHHTSCC-
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 689999999999998602
No 37
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A
Probab=20.56 E-value=50 Score=14.75 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=33.0
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCCEEEEECCCCCEEEEEEECCC-CCCCHHH-HHHH
Q ss_conf 048899999999999999789899998118889-----------87439999069829999997689-8868899-9999
Q gi|254780128|r 6 FHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRR-----------GCPDRLIITPNGGLWWIEVKKPT-GRLSHQQ-MSEI 72 (103)
Q Consensus 6 ~h~~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~-----------GvPDli~~~~~g~~~fIEvK~~~-gkls~~Q-~~~~ 72 (103)
-|.+++..++ .++++.+.|..+.=.+ ||+ |+. -++.. +|..++..=|... ..++... ...+
T Consensus 18 ~~~i~~~~~~--al~~l~~~gi~v~i~T--GR~~~~~~~~~~~l~~~-~~I~~-nG~~i~~~~~~~~~~~~~~~~~~~i~ 91 (258)
T 2pq0_A 18 QKQLPLSTIE--AVRRLKQSGVYVAIAT--GRAPFMFEHVRKQLGID-SFVSF-NGQYVVFEGNVLYKQPLRREKVRALT 91 (258)
T ss_dssp TSCCCHHHHH--HHHHHHHTTCEEEEEC--SSCGGGSHHHHHHHTCC-CEEEG-GGTEEEETTEEEEECCCCHHHHHHHH
T ss_pred CCCCCHHHHH--HHHHHHHCCCEEEEEC--CCCHHHHHHHHHHHCCC-CEEEC-CCCEEEECCCEEEECCCCHHHHHHHH
T ss_conf 5942999999--9999996899899989--99879999999971878-27955-87499954716873331289999999
Q ss_pred HHHHHCCCEEEE
Q ss_conf 999978988999
Q gi|254780128|r 73 EELRRRGQRVKV 84 (103)
Q Consensus 73 ~~l~~~G~~~~V 84 (103)
+.+.+.+.....
T Consensus 92 ~~~~~~~~~~~~ 103 (258)
T 2pq0_A 92 EEAHKNGHPLVF 103 (258)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHHCCCCEEE
T ss_conf 999973987499
Done!