RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY
           crystallography, heme, electron transport,
           oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea}
           (A:113-217,A:389-474)
          Length = 191

 Score = 28.6 bits (64), Expect = 0.30
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 51  GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEE 97
           GL ++ +  P GRL   +M E+  +              Q + +  V   ++D+ L E
Sbjct: 126 GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNE 183


>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA;
           sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET:
           SRM; 2.80A {Mycobacterium tuberculosis H37RV}
           (A:46-169,A:332-418)
          Length = 211

 Score = 27.9 bits (62), Expect = 0.46
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 51  GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEELA 99
           GL  + V    GR+S   ++ + +L  R           Q++ +L +    +D+ +  L 
Sbjct: 144 GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLD 203


>3bz6_A A Conserved Protein Of Unknown Function {Pseudomonas
           Syringae Pv. Tomato Str. Dc3000} (A:)
          Length = 183

 Score = 26.6 bits (59), Expect = 1.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 74  ELRRRGQRVKVLVSMEEVDNFLEELA 99
           EL  R  R       E+V + LE L 
Sbjct: 127 ELLTRSNRXHDFEDSEQVVHQLERLI 152


>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
           aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus}
           (A:376-505)
          Length = 130

 Score = 26.4 bits (58), Expect = 1.3
 Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 37  RRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLE 96
             G P  + +  +       + +   +    ++ +   +R R    ++ + ++E++ FL 
Sbjct: 74  EVGTPFAVTVDYD------TIGQ--SKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 125

Query: 97  EL 98
           E 
Sbjct: 126 ER 127


>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like
           domain, glycoprotein, hydrolase, membrane,
           phosphoprotein, transmembrane, cell adhesion; 1.70A {Mus
           musculus} PDB: 3kld_B* 3jxh_C (A:)
          Length = 269

 Score = 26.5 bits (57), Expect = 1.4
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 49  NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
           +  + WI  ++P   +S+ Q+     +    Q+  V       +NF
Sbjct: 211 SEIVEWIVFRRPV-PISYHQLEAFYSIFTTEQQDHVKSVEYLRNNF 255


>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S
           SEED storage protein; 2.40A {Prunus dulcis} PDB: 3ehk_A
           (A:1-365)
          Length = 365

 Score = 26.1 bits (57), Expect = 1.6
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 43  RLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTL 102
             II   G L +++  +      H++  + +  + R Q+       + + N LEE  C+L
Sbjct: 302 NQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQ-----GEQLMANGLEETFCSL 356


>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural
          genomics, joint center for structural genomics, JCSG;
          HET: MSE; 2.12A {Salmonella typhimurium LT2}
          (A:211-305)
          Length = 95

 Score = 26.2 bits (58), Expect = 1.7
 Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELA 99
           +GR        I  + R   ++  L+  +++   +++L+
Sbjct: 59 SSGRTRPLDDRAIRFIERYQGKL-QLIDADKLG--IQDLS 95


>2j0j_A Focal adhesion kinase 1; cell migration, phosphorylation,
          FERM, transferase, ATP-binding, integrin signaling,
          nucleotide-binding; HET: 4ST; 2.8A {Gallus gallus} PDB:
          2j0k_A* (A:222-343)
          Length = 122

 Score = 25.9 bits (57), Expect = 2.1
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 31 KASFVGRRGCPDRLIITPNGGLWWIEVKK--PTGRLSHQQMSEIEELRRRGQRVKVLVSM 88
          K +          L I P  G+ ++  K   PT      Q+  I+      +  K ++ +
Sbjct: 8  KCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQL 67

Query: 89 EEVDN 93
          +    
Sbjct: 68 KIAGA 72


>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis}
          (A:)
          Length = 290

 Score = 25.4 bits (54), Expect = 2.6
 Identities = 8/45 (17%), Positives = 19/45 (42%)

Query: 44 LIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSM 88
           I +           + +  +      +++ L+RR   VKV++S+
Sbjct: 40 AIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISI 84


>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin;
           1.73A {Arachis hypogaea} (A:1-343)
          Length = 343

 Score = 25.4 bits (55), Expect = 2.9
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 43  RLIITPNGGLWWIEVKKPTGRLSHQQMSEIEEL-RRRGQRVKVLVSMEEVDNFLEELACT 101
             I+T  GGL  +       R + ++    E+      +  +         N +EE  CT
Sbjct: 276 GAIVTVRGGLRIL--SPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICT 333

Query: 102 L 102
            
Sbjct: 334 A 334


>2dbn_A Hypothetical protein YBIU; alpha/beta structure,
          structural genomics, NPPSFA, national project on
          protein structural and functional analyses; 1.70A
          {Escherichia coli} PDB: 2dbi_A 2csg_A* (A:71-461)
          Length = 391

 Score = 25.1 bits (53), Expect = 3.8
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 63 RLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
               +++EI  L+ +G  V  ++S  ++   
Sbjct: 11 DDIATRVAEINALKAQGDAVWPVLSYADIKAG 42


>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like
           domain, alternative splicing, glycoprotein, hydrolase,
           membrane, polymorphism; 2.00A {Homo sapiens} (A:)
          Length = 272

 Score = 24.6 bits (52), Expect = 4.1
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 49  NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
              + WI  K     +S  Q++   E+    Q   V++     +NF
Sbjct: 211 TDTVDWIVFKDTV-SISESQLAVFCEVLTMQQSGYVMLMDYLQNNF 255


>2a3n_A Putative glucosamine-fructose-6-phosphate
          aminotransferase; 16423107, structural genomics, joint
          center for structural genomics, JCSG; HET: MSE; 1.23A
          {Salmonella typhimurium LT2} (A:218-311)
          Length = 94

 Score = 24.3 bits (53), Expect = 5.6
 Identities = 2/33 (6%), Positives = 8/33 (24%), Gaps = 1/33 (3%)

Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92
            G+             +    + V++  +   
Sbjct: 59 GEGKCRALDERVERFASKITDNL-VVIDPKAYA 90


>1oyg_A Levansucrase; glycoside hydrolase, beta-propeller,
           transferase; 1.50A {Bacillus subtilis} (A:313-447)
          Length = 135

 Score = 23.8 bits (51), Expect = 7.4
 Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 3/55 (5%)

Query: 4   YSFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVK 58
            +    +     +      +         +  G++    +  I   G       K
Sbjct: 84  NNVVITS-YMTNRGFYADKQSTFAPSFLLNIKGKKTSVVKDSILEQG--QLTVNK 135


>3hba_A Putative phosphosugar isomerase; YP_563707.1, structural
          genomics, joint center for structural genomics, JCSG;
          HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
          (A:199-292)
          Length = 94

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92
                   + +I  +++RG  + + +     D
Sbjct: 63 IRDESYGSHVEQIANVKQRGANL-IHLHQTSAD 94


>3eua_A Putative fructose-aminoacid-6-phosphate deglycase;
          NP_391141.1, structural genomics, joint center for
          structural genomics, JCSG; HET: MSE FLC; 1.90A
          {Bacillus subtilis} (A:193-286)
          Length = 94

 Score = 23.9 bits (52), Expect = 7.9
 Identities = 2/33 (6%), Positives = 11/33 (33%), Gaps = 1/33 (3%)

Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92
                  +   +   ++ G+++  ++     D
Sbjct: 59 GLDETRPLEERALTFSKKYGKKL-TVLDAASYD 90


>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
           globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
           2evx_A (A:1-293)
          Length = 293

 Score = 23.6 bits (50), Expect = 9.1
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 28  WVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVS 87
              + +F    G   +L    +     ++V +    L  ++  E     R  +      S
Sbjct: 216 EFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIE------S 269

Query: 88  MEEVDNFLEELACTL 102
             E +N LEE  CTL
Sbjct: 270 ESESENGLEETICTL 284


>2ixs_A SDAI restriction endonuclease; hydrolase, domain
           architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
           (A:160-323)
          Length = 164

 Score = 23.5 bits (51), Expect = 9.1
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 37  RRGCPDRLIITPNGG-LWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVS----MEEV 91
               PD ++       L+ +E  K  G    ++   + EL        V V+     E +
Sbjct: 69  HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENREAM 128

Query: 92  DNFLEELA 99
             +L ELA
Sbjct: 129 RQWLPELA 136


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 878,424
Number of extensions: 39062
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 35
Length of query: 103
Length of database: 4,956,049
Length adjustment: 61
Effective length of query: 42
Effective length of database: 2,893,944
Effective search space: 121545648
Effective search space used: 121545648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)