RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
(103 letters)
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas
syringae PV. tomato STR. DC3000, structural genomics,
PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Length = 183
Score = 27.8 bits (62), Expect = 0.61
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEELA 99
EL R R+ E+V + LE L
Sbjct: 127 ELLTRSNRMHDFEDSEQVVHQLERLI 152
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens}
Length = 272
Score = 27.1 bits (59), Expect = 1.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
+ WI K +S Q++ E+ Q V++ +NF
Sbjct: 213 TVDWIVFKDTV-SISESQLAVFCEVLTMQQSGYVMLMDYLQNNF 255
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genomics consortium,
SGC, transferase; 2.55A {Homo sapiens}
Length = 418
Score = 26.6 bits (58), Expect = 1.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 40 CPDRLIITPNGGLWWIEVKKPTGRLSHQQMSE-IEELRRRGQRVKVLVSM 88
P++ + P GG + + P G +Q+ + EL+RRG+R +VSM
Sbjct: 356 PPEK--VNPLGGA--VALGHPLGCTGARQVITLLNELKRRGKRAYGVVSM 401
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase,
editing, translation; HET: P5A; 2.3A {Enterococcus
faecalis} PDB: 2j3m_A*
Length = 572
Score = 26.4 bits (57), Expect = 1.8
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
E++ + + V EE+++ L L
Sbjct: 540 EVKIKRTGEMLEVRKEELESTLSIL 564
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase; HET: 5CA; 2.55A
{Methanothermobacterthermautotrophicus} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 26.2 bits (57), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
+ RR KV ++ ++ L EL
Sbjct: 387 VISRRDTGEKVTADLQGIEETLREL 411
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 26.0 bits (56), Expect = 2.4
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
+ + WI ++P +S+ Q+ + Q+ V +NF
Sbjct: 211 SEIVEWIVFRRPV-PISYHQLEAFYSIFTTEQQDHVKSVEYLRNNF 255
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 25.3 bits (54), Expect = 3.3
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
+R R ++ + ++E++ FL E
Sbjct: 478 TVRDRDTMEQIRLHVDELEGFLRER 502
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four
helix bundle, DNA binding protein; 1.95A {Mus musculus}
SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Length = 454
Score = 25.4 bits (55), Expect = 3.4
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
+LR R +K ++ + ++ +FL +
Sbjct: 412 QLRSRDTTMKEMMHISKLRDFLVKY 436
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET:
DNA; 3.10A {Homo sapiens}
Length = 459
Score = 25.1 bits (54), Expect = 4.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
LR R +K ++ + ++ +FL +
Sbjct: 422 HLRSRDTTMKEMMHISKLKDFLIKY 446
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.75A {Silicibacter pomeroyi dss-3}
Length = 344
Score = 25.2 bits (54), Expect = 4.2
Identities = 5/60 (8%), Positives = 12/60 (20%), Gaps = 3/60 (5%)
Query: 42 DRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACT 101
I+ + +++ +G V LE +
Sbjct: 247 PVSIVEEGFPVLGFA---AGDAAEAPLAEIADQIAAKGATVFATTGRVTRARVLEHVRSG 303
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA
synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP:
c.51.1.1 d.68.5.1 d.104.1.1
Length = 459
Score = 24.4 bits (52), Expect = 5.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
L RR K V ++ +E+
Sbjct: 354 TLFRRDTMEKFQVDETQLMEVVEKT 378
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B
Length = 266
Score = 23.7 bits (51), Expect = 9.4
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 64 LSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
+S + + I ++ + ++V V V + +++
Sbjct: 46 VSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSL 82
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid
decarboxylase, X-RAY diffraction, structural genomics,
NPPSFA; 2.15A {Aquifex aeolicus}
Length = 189
Score = 23.8 bits (51), Expect = 9.8
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 72 IEELRRRGQRVKVLVSMEEVDNFLEELACTL 102
++ L V +++S EE + T
Sbjct: 21 LQVLEELDFSVDLVISRNAKVVLKEEHSLTF 51
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 985,758
Number of extensions: 44526
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 28
Length of query: 103
Length of database: 5,693,230
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,044,638
Effective search space: 141562330
Effective search space used: 141562330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)