RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
(103 letters)
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 80
Score = 27.4 bits (61), Expect = 0.31
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEELA 99
GL + V GR+S ++ + +L R Q++ +L + +D+ + L
Sbjct: 14 GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLD 73
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 84
Score = 27.4 bits (61), Expect = 0.33
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEELA 99
EL R R+ E+V + LE L
Sbjct: 28 ELLTRSNRMHDFEDSEQVVHQLERLI 53
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 235
Score = 27.2 bits (60), Expect = 0.39
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVGR--RGCPDRLIITPNGGLWWI 55
Y + + D W+ +A+ +G+ L + G L+ +
Sbjct: 148 YAVHGQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV 197
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 85
Score = 26.6 bits (59), Expect = 0.55
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEE 97
GL ++ + P GRL +M E+ + Q + + V ++D+ L E
Sbjct: 18 GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNE 75
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 153
Score = 26.4 bits (58), Expect = 0.67
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR-----------GQRVKVL-VSMEEVDNFLEEL 98
G + + +K P G + +Q + + ++ Q ++ V + +V ++ L
Sbjct: 83 GRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGL 142
Query: 99 A 99
Sbjct: 143 E 143
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, C-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 127
Score = 25.4 bits (55), Expect = 1.4
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98
+LR R +K ++ + ++ +FL +
Sbjct: 86 QLRSRDTTMKEMMHISKLRDFLVKY 110
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma
chain {Cow (Bos taurus) [TaxId: 9913]}
Length = 54
Score = 25.4 bits (56), Expect = 1.4
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 67 QQMSEIEELRRRG--QRVKVLVSMEEVDNFLEELAC 100
Q +E+L+ R+KV + ++ + E A
Sbjct: 4 QARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAK 39
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 23.9 bits (51), Expect = 3.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 69 MSEIEELRRRGQRVKVLVSMEEVDNFLEELACTLY 103
M + EL+ RG V + + L E TLY
Sbjct: 1 MDLLAELQWRGL-VNQTTDEDGLRKLLNEERVTLY 34
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 23.4 bits (49), Expect = 5.1
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 72 IEELRRRGQRVKVLVSMEEVD 92
L++ G + + E+
Sbjct: 6 FWILKKYGVSDHIAKAFLEIP 26
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 23.4 bits (51), Expect = 5.1
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 71 EIEELRRRGQRVKVLVSM 88
+EE+ +++ V++S+
Sbjct: 24 TVEEVHPEKRKLTVMISI 41
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains
2 and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 23.2 bits (50), Expect = 5.7
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 50 GGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVK 83
+ + L + + E+ E R++ Q+V
Sbjct: 40 MTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVD 73
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 23.4 bits (51), Expect = 6.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 71 EIEELRRRGQRVKVLVSM 88
+ E+ +VKV+V++
Sbjct: 24 TVTEINPERGKVKVMVTI 41
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA,
peptide-binding domain {Escherichia coli [TaxId: 562]}
Length = 173
Score = 23.1 bits (49), Expect = 6.9
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 72 IEELRRRGQRVKVLVSMEEVDNFLEEL 98
I E+R R ++ + +EV++ +++
Sbjct: 114 ISEVRNNEVRRRITILPQEVESLAQQV 140
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 312
Score = 22.8 bits (48), Expect = 8.4
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVL 85
+ G+++ E P L + I + Q +
Sbjct: 2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLF 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,694
Number of extensions: 19441
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 29
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)