HHsearch alignment for GI: 254780129 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.22 E-value=5.8e-11 Score=82.10 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 134899999999996798199968999889999-999999974089948997233-101378899998515534606998
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSV-LFALSTIKILDPRPVLIIAPL-RVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~~~~~~LIi~P~-s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll---~--~G~TLVVSPLiSLM~DQ-V~~l~~----~Gi~A~~ 86 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALL---L--EGLTLVVSPLISLMKDQ-VDQLEA----AGIRAAY 86 (590)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH---C--CCCEEEECCHHHHHHHH-HHHHHH----CCCEEEH
T ss_conf 038888999999965886799853898710674367886---5--99789978568889999-999997----5965204
Q ss_pred EECC--CCCCCC----CCCCCCCEEEECHHHHHC-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH-CC
Q ss_conf 6112--101122----345676627865667310-000000024720000251220136543320369999999851-37
Q gi|254780129|r 82 LIGS--ERQRIK----ALNTPAHLYIINFENIPW-LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAF-SK 153 (220)
Q Consensus 82 ~~~~--~~~~~~----~~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~-~~ 153 (220)
T Consensus 87 lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW-GhdFRP~Y~~lg~l~~~~~ 165 (590)
T COG0514 87 LNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW-GHDFRPDYRRLGRLRAGLP 165 (590)
T ss_pred HHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHC-CCCCCHHHHHHHHHHHHCC
T ss_conf 424367877999999986496459998813631768999997088756996217777641-7743776899999985179
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 98799831653248889999999982888
Q gi|254780129|r 154 VKRFIELTGTPSPNGLIDLWGQIWFLDKG 182 (220)
Q Consensus 154 ~~~~l~LTgTPi~n~~~el~~ll~~l~p~ 182 (220)
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l~~~~ 194 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGLQDAN 194 (590)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 99779973789867899999984678866