HHsearch alignment for GI: 254780129 and conserved domain: COG0514

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.22  E-value=5.8e-11  Score=82.10  Aligned_cols=168  Identities=20%  Similarity=0.266  Sum_probs=106.5

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             134899999999996798199968999889999-999999974089948997233-101378899998515534606998
Q gi|254780129|r    4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSV-LFALSTIKILDPRPVLIIAPL-RVAQYVWKDEVERWSAFSDMTVSS   81 (220)
Q Consensus         4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~~~~~~LIi~P~-s~~~~~W~~e~~~~~~~~~~~~~~   81 (220)
T Consensus        17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll---~--~G~TLVVSPLiSLM~DQ-V~~l~~----~Gi~A~~   86 (590)
T COG0514          17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALL---L--EGLTLVVSPLISLMKDQ-VDQLEA----AGIRAAY   86 (590)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH---C--CCCEEEECCHHHHHHHH-HHHHHH----CCCEEEH
T ss_conf             038888999999965886799853898710674367886---5--99789978568889999-999997----5965204


Q ss_pred             EECC--CCCCCC----CCCCCCCEEEECHHHHHC-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH-CC
Q ss_conf             6112--101122----345676627865667310-000000024720000251220136543320369999999851-37
Q gi|254780129|r   82 LIGS--ERQRIK----ALNTPAHLYIINFENIPW-LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAF-SK  153 (220)
Q Consensus        82 ~~~~--~~~~~~----~~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~-~~  153 (220)
T Consensus        87 lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqW-GhdFRP~Y~~lg~l~~~~~  165 (590)
T COG0514          87 LNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQW-GHDFRPDYRRLGRLRAGLP  165 (590)
T ss_pred             HHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHC-CCCCCHHHHHHHHHHHHCC
T ss_conf             424367877999999986496459998813631768999997088756996217777641-7743776899999985179


Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             98799831653248889999999982888
Q gi|254780129|r  154 VKRFIELTGTPSPNGLIDLWGQIWFLDKG  182 (220)
Q Consensus       154 ~~~~l~LTgTPi~n~~~el~~ll~~l~p~  182 (220)
T Consensus       166 ~~p~~AlTATA~~~v~~DI~~~L~l~~~~  194 (590)
T COG0514         166 NPPVLALTATATPRVRDDIREQLGLQDAN  194 (590)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf             99779973789867899999984678866