HHsearch alignment for GI: 254780129 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=90.48 E-value=0.23 Score=26.98 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHH-H-CCCCEEEECCCCC--HHHHHHHHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 713489999999999-6-7981999689998--899999999999-7408994899723310137889999851553460
Q gi|254780129|r 3 LVLKPHQIVMVNWLL-S-HDRCALWASMGSG--KTVSVLFALSTI-KILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDM 77 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~-~-~~~~~l~~~~G~G--KT~~ai~~~~~~-~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~ 77 (220)
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~ 161 (866)
T COG0553 83 FILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTL-RAQWVVELLEKFNIRLA 161 (866)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHCCCCHH
T ss_conf 32132203677776654303444431014333330333235666665554320110364024-55677877764155367
Q ss_pred EEE-EEECCCCCCC---CCCCCCCCEEEECHHHHHCC---CCCCCCCCCC---CCCCCCHHHCCCCCCC-----CCHHHH
Q ss_conf 699-8611210112---23456766278656673100---0000002472---0000251220136543-----320369
Q gi|254780129|r 78 TVS-SLIGSERQRI---KALNTPAHLYIINFENIPWL---VKMKLDHWDF---ATIVVDESTKLKSFRT-----HQGTKQ 142 (220)
Q Consensus 78 ~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~l~~~---~~~~~~~~~~---~~iIiDEaH~~kn~~~-----~~~~k~ 142 (220)
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (866)
T COG0553 162 VLDKEGLRYLLKQYDAYNPFSTE-DLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLE 240 (866)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf 77542224443201223432221-02444323676542000133202210023555405776412342111100245678
Q ss_pred HHHHHHHHHCCC-----CEEEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999999851379-----87998316532488899999999828885
Q gi|254780129|r 143 TRALGKVAFSKV-----KRFIELTGTPSPNGLIDLWGQIWFLDKGK 183 (220)
Q Consensus 143 ~k~l~~~~~~~~-----~~~l~LTgTPi~n~~~el~~ll~~l~p~~ 183 (220)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (866)
T COG0553 241 YELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLR 286 (866)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCH
T ss_conf 8886656640443112221444100043302000011320113101