HHsearch alignment for GI: 254780129 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.57 E-value=1.4e-14 Score=102.95 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHH----HC------CCCEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 713489999999999----67------981999689998899999999999740-8994899723310137889999851
Q gi|254780129|r 3 LVLKPHQIVMVNWLL----SH------DRCALWASMGSGKTVSVLFALSTIKIL-DPRPVLIIAPLRVAQYVWKDEVERW 71 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~----~~------~~~~l~~~~G~GKT~~ai~~~~~~~~~-~~~~~LIi~P~s~~~~~W~~e~~~~ 71 (220)
T Consensus 247 ~~~~~~q~~a~~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~ 326 (962)
T COG0610 247 KYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSF 326 (962)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 12788999999999999997126787772389840698378999999999983659996999967288999999999998
Q ss_pred CCCCCCEEEEEECCCCCCCCCCC-CCCCEEEECHHHHHCCCCCC---CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 55346069986112101122345-67662786566731000000---002472000025122013654332036999999
Q gi|254780129|r 72 SAFSDMTVSSLIGSERQRIKALN-TPAHLYIINFENIPWLVKMK---LDHWDFATIVVDESTKLKSFRTHQGTKQTRALG 147 (220)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~~~---~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~ 147 (220)
T Consensus 327 ~~~~~~~~--~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~------G~~~~~~~ 398 (962)
T COG0610 327 GKVAFNDP--KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY------GELAKLLK 398 (962)
T ss_pred HHHHHCCC--CCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC------HHHHHHHH
T ss_conf 87632044--44579999999865898489997102643333332000478767999864010356------07899999
Q ss_pred HHHHCCCCEEEEECCCCCCCC
Q ss_conf 985137987998316532488
Q gi|254780129|r 148 KVAFSKVKRFIELTGTPSPNG 168 (220)
Q Consensus 148 ~~~~~~~~~~l~LTgTPi~n~ 168 (220)
T Consensus 399 ~~-~~~-a~~~gFTGTPi~~~ 417 (962)
T COG0610 399 KA-LKK-AIFIGFTGTPIFKE 417 (962)
T ss_pred HH-HCC-CEEEEEECCCCCCC
T ss_conf 87-036-70897517856402